genome.fa.s12.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  172  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56876931--56877108	27	6.6	27	83	3	205	26	15	28	29	1.96
56876932--56877087	82	1.9	81	88	3	233	26	15	28	29	1.96
56876928--56877108	82	2.2	81	83	2	229	27	15	27	29	1.96
56880158--56880222	15	4.4	15	78	16	73	63	13	13	9	1.53
56880158--56880226	30	2.3	31	83	14	92	60	17	13	8	1.56
56893770--56893849	15	5.4	15	73	18	69	58	12	17	11	1.62
56893781--56893858	15	5.2	15	73	14	63	56	14	16	12	1.68
56896797--56896967	93	1.8	93	94	0	306	28	28	21	21	1.98
56896792--56896964	46	3.7	46	80	10	217	29	27	20	21	1.98
56900103--56900128	13	2.0	13	100	0	52	38	0	15	46	1.46
56902610--56902702	42	2.2	43	82	5	118	27	17	24	30	1.97
56903810--56903938	65	2.0	65	90	0	204	22	14	25	37	1.92
56909753--56909793	21	2.0	20	85	4	55	39	17	2	41	1.62
56910801--56910838	19	2.0	20	89	5	60	71	0	7	21	1.11
56911893--56912005	24	4.6	25	75	16	103	30	15	29	25	1.95
56911870--56911981	49	2.3	48	83	7	129	27	16	29	26	1.97
56913214--56913470	50	5.1	50	80	3	266	38	19	12	29	1.88
56919835--56919960	43	2.9	43	79	0	135	33	26	15	24	1.95
56920146--56920193	21	2.3	21	100	0	96	43	6	25	25	1.77
56921011--56921035	8	3.1	8	100	0	50	64	0	24	12	1.27
56921911--56921989	28	2.8	28	80	0	104	34	10	25	30	1.89
56925610--56925679	25	2.5	29	77	22	94	21	32	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56925612--56925670	25	2.4	25	97	0	109	20	35	15	28	1.93
56927379--56927408	11	2.7	11	100	0	60	70	6	6	16	1.31
56932639--56932811	46	3.7	46	78	10	199	21	19	27	31	1.97
56932636--56932806	93	1.8	93	92	0	288	21	19	28	30	1.97
56933036--56933073	19	2.0	20	85	15	53	36	0	23	39	1.55
56940183--56940355	46	3.7	46	79	10	208	21	20	27	29	1.98
56940180--56940350	93	1.8	93	93	0	297	21	21	28	28	1.98
56940579--56940616	19	2.0	20	85	15	53	36	0	23	39	1.55
56941545--56941626	39	2.1	39	100	0	164	41	12	28	18	1.86
56943452--56943499	15	3.3	15	73	5	53	29	0	27	43	1.55
56943446--56943489	14	3.1	14	74	6	52	27	0	34	38	1.57
56943446--56943505	29	2.1	29	93	0	102	28	0	30	41	1.56
56945277--56945356	37	2.2	37	86	4	108	27	31	17	23	1.97
56945495--56945625	47	2.8	47	87	1	183	25	32	11	30	1.91
56949399--56949442	13	3.3	13	80	3	52	50	15	0	34	1.45
56959810--56959849	19	2.1	19	85	0	53	25	35	17	22	1.95
56964215--56964298	41	2.0	41	100	0	168	27	26	23	22	2.00
56964388--56964432	14	3.2	14	87	0	54	42	6	33	17	1.76
56966379--56966554	46	3.8	46	77	12	198	21	20	28	29	1.98
56966376--56966547	93	1.8	93	93	0	299	21	20	29	28	1.98
56981528--56981703	46	3.8	46	76	12	198	20	20	30	28	1.98
56984222--56984271	11	4.3	12	77	7	50	18	4	8	70	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56984222--56984271	23	2.2	23	85	0	64	18	4	8	70	1.28
56984264--56984293	11	2.7	11	94	0	51	10	10	0	80	0.92
56986699--56986758	29	2.1	29	93	0	102	41	30	0	28	1.56
56986705--56986752	15	3.3	15	73	5	53	43	27	0	29	1.55
56987936--56988190	55	4.8	54	77	7	229	36	18	23	21	1.94
56988383--56988413	16	1.9	16	93	0	53	41	0	22	35	1.54
56991085--56991113	14	2.0	15	93	6	51	24	0	20	55	1.44
56995716--56996020	43	7.1	43	93	0	511	31	33	23	11	1.90
56995716--56996159	129	3.6	129	87	8	673	31	32	23	11	1.91
56995951--56996092	73	2.0	72	91	1	230	32	33	21	12	1.91
56996024--56996157	43	3.1	43	85	2	198	31	31	24	12	1.92
56996157--56996253	38	2.6	38	77	0	104	29	22	21	25	1.99
56998160--56998207	14	3.4	14	85	0	60	43	6	31	18	1.75
57001465--57001517	23	2.4	22	76	20	56	9	18	1	69	1.25
57011194--57011239	12	4.7	10	82	17	53	10	2	4	82	0.89
57011611--57011658	14	3.4	14	85	0	60	43	6	31	18	1.75
57013894--57014102	79	2.6	80	87	3	280	28	28	19	23	1.98
57013894--57014155	40	6.6	40	86	3	316	28	27	19	24	1.99
57026108--57026273	40	4.2	40	90	0	253	27	27	22	22	1.99
57028342--57028384	16	2.7	16	77	0	50	9	18	18	53	1.70
57037489--57037696	40	5.2	40	88	2	303	23	22	28	25	1.99
57042827--57042900	29	2.6	29	82	4	87	27	31	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57044712--57044772	10	6.2	10	76	14	56	60	0	4	34	1.18
57044715--57044794	29	2.8	29	81	11	83	56	1	7	35	1.36
57044905--57044942	19	2.1	18	90	5	58	57	2	2	36	1.26
57044900--57044945	19	2.4	18	82	13	56	58	2	2	36	1.22
57044938--57045003	18	3.2	20	80	17	73	63	0	3	33	1.10
57044942--57045003	24	2.8	23	83	9	76	64	0	3	32	1.09
57044899--57045003	18	5.6	19	68	15	58	61	0	2	34	1.17
57046550--57047057	44	11.5	44	84	2	633	27	27	13	30	1.95
57057057--57057200	40	3.6	40	87	0	207	22	25	27	25	2.00
57057057--57057209	80	1.9	80	94	0	270	22	24	28	24	1.99
57062209--57062244	7	5.0	7	86	6	54	66	0	2	30	1.06
57062209--57062244	15	2.5	14	86	8	54	66	0	2	30	1.06
57062463--57062501	19	2.1	19	90	0	60	56	2	2	38	1.27
57062498--57062558	15	4.0	14	72	17	50	65	0	3	31	1.09
57062509--57062547	12	3.4	11	82	10	51	64	0	2	33	1.08
57062511--57062560	18	2.6	19	84	9	57	66	0	2	32	1.03
57066931--57067110	45	4.0	44	75	8	175	46	11	17	24	1.82
57066932--57067006	22	3.4	22	68	18	57	49	10	17	22	1.77
57066930--57067096	90	1.9	90	85	2	237	47	11	17	23	1.81
57067254--57067341	27	3.3	27	81	0	104	32	13	28	25	1.94
57067254--57067356	27	3.8	27	80	0	98	34	13	27	24	1.93
57067353--57067404	27	1.9	27	84	0	68	46	23	15	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57069080--57069156	39	2.0	39	100	0	154	45	15	5	33	1.69
57081966--57082110	40	3.6	40	100	0	290	24	23	28	24	2.00
57087647--57087729	28	2.9	28	84	8	105	26	16	32	24	1.96
57088052--57088434	27	14.4	27	78	7	327	39	19	9	31	1.84
57088044--57088298	79	3.2	79	85	5	302	40	18	9	32	1.83
57088052--57088407	53	6.7	54	80	7	325	39	19	9	31	1.83
57088044--57088407	106	3.4	106	79	6	371	39	19	9	31	1.83
57088398--57088479	27	3.0	27	90	0	119	34	17	20	28	1.95
57091062--57091355	50	5.8	50	78	6	254	27	15	24	32	1.95
57095580--57095666	34	2.5	34	79	5	95	27	22	28	20	1.99
57105314--57105354	21	1.9	22	85	5	57	31	24	4	39	1.76
57108066--57108288	40	5.6	40	86	3	236	24	21	27	26	1.99
57108141--57108323	79	2.3	80	82	1	226	25	20	27	25	1.99
57115400--57115657	80	3.3	79	78	4	225	25	20	27	26	1.99
57115453--57115622	40	4.3	40	87	0	207	24	20	27	27	1.99
57122741--57122965	80	2.8	79	82	3	245	24	20	27	27	1.99
57122741--57122963	40	5.6	40	84	3	218	25	20	27	26	1.99
57124372--57124619	49	5.0	49	82	3	309	29	25	17	27	1.98
57124376--57124619	100	2.5	99	84	5	314	29	25	18	26	1.98
57146684--57146861	27	6.6	27	83	3	178	30	28	14	26	1.95
57146705--57146860	82	1.9	81	86	3	224	30	28	14	26	1.95
57154736--57154913	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57154757--57154912	82	1.9	81	88	3	233	29	28	15	26	1.96
57170141--57170179	21	1.9	20	84	5	51	35	7	7	48	1.61
57174893--57174917	13	1.9	13	100	0	50	60	16	0	24	1.36
57181389--57181645	40	6.5	40	88	4	335	26	27	22	24	2.00
57181389--57181645	119	2.2	120	86	6	346	26	27	22	24	2.00
57181389--57181640	79	3.2	80	87	6	309	26	26	21	24	2.00
57193557--57193914	46	7.6	48	78	11	252	23	30	19	27	1.98
57193557--57193914	94	3.8	93	73	15	269	23	30	19	27	1.98
57193551--57193914	48	7.7	47	76	14	249	23	30	19	27	1.98
57195800--57195977	27	6.6	27	84	3	205	29	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320