genome.fa.s12.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  138  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45231726--45231978	80	3.2	80	86	3	262	24	28	20	25	1.99
45231721--45231978	120	2.2	118	78	4	266	25	28	20	25	1.99
45239707--45239916	40	5.3	40	88	0	269	24	29	21	24	1.99
45239707--45239916	80	2.6	79	90	0	321	24	29	21	24	1.99
45239710--45239962	80	3.2	80	86	3	262	24	28	20	25	1.99
45239705--45239962	120	2.2	118	78	4	266	25	28	20	25	1.99
45244985--45245080	5	18.2	5	72	21	72	18	4	1	76	1.01
45244987--45245080	12	8.3	11	74	12	75	18	4	1	76	1.00
45244988--45245046	30	2.0	30	86	0	82	13	5	1	79	0.97
45244987--45245080	18	5.0	18	74	14	66	18	4	1	76	1.00
45244987--45245035	9	5.1	9	76	13	53	14	4	0	81	0.83
45244997--45245080	6	14.3	6	73	12	59	17	4	1	76	1.03
45244987--45245080	17	5.6	16	72	16	66	18	4	1	76	1.00
45249466--45249505	21	1.9	21	84	0	53	32	0	20	47	1.50
45252493--45252620	49	2.6	49	88	4	179	24	28	17	28	1.98
45262925--45263017	42	2.2	42	98	0	177	20	30	27	21	1.98
45270385--45270562	27	6.6	27	83	3	196	26	14	28	30	1.95
45270386--45270541	82	1.9	81	86	3	224	26	14	28	30	1.95
45270382--45270562	82	2.2	81	82	2	220	27	14	27	30	1.95
45281898--45281956	30	2.0	30	86	6	84	33	3	13	49	1.59
45287646--45287692	18	2.6	18	86	6	60	46	14	0	38	1.45
45288044--45288084	11	3.5	11	83	9	55	43	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45294019--45294124	47	2.3	47	91	0	167	36	11	24	27	1.90
45294142--45294287	55	2.7	53	76	6	141	36	20	23	19	1.95
45294699--45294755	28	2.0	28	96	0	105	33	10	15	40	1.82
45299569--45299910	47	7.3	47	90	0	531	34	8	28	28	1.86
45306602--45306765	45	3.5	46	73	10	145	35	18	24	21	1.95
45306793--45306971	55	3.3	54	80	5	209	34	16	25	22	1.95
45312799--45312832	5	6.6	5	93	6	59	17	0	0	82	0.67
45316251--45316275	7	3.6	7	100	0	50	12	16	0	72	1.13
45316621--45316652	15	2.1	15	94	0	55	78	0	0	21	0.76
45320116--45320198	35	2.3	35	83	6	96	18	15	27	38	1.91
45326741--45327003	40	6.6	40	88	3	325	24	20	27	26	1.99
45326780--45327038	80	3.3	80	85	3	256	25	20	27	25	1.99
45333414--45333456	1	43.0	1	80	0	50	90	0	6	2	0.52
45333419--45333456	11	3.5	11	92	7	60	92	0	5	2	0.47
45333414--45333458	19	2.3	19	92	3	72	88	0	8	2	0.58
45335090--45335310	40	5.8	40	88	9	315	28	20	28	21	1.98
45335090--45335310	76	2.9	79	88	10	322	28	20	28	21	1.98
45335357--45335456	36	2.7	36	82	11	107	32	20	29	19	1.96
45343842--45344057	35	6.5	35	72	24	150	29	22	25	21	1.99
45343842--45344145	68	4.6	67	72	22	223	30	23	26	19	1.98
45343842--45344072	33	6.8	36	72	22	166	29	23	25	21	1.99
45343969--45344052	31	2.7	31	82	15	95	29	22	27	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45343868--45344145	131	2.1	136	81	14	330	30	24	26	18	1.98
45344038--45344145	34	3.1	34	79	18	118	32	23	26	17	1.97
45356752--45356972	40	5.6	40	83	7	256	24	21	26	26	2.00
45359218--45359301	41	2.0	41	81	6	98	34	3	2	59	1.28
45368409--45368433	13	1.9	13	100	0	50	28	24	32	16	1.96
45379157--45379186	9	3.3	9	100	0	60	50	0	0	50	1.00
45386570--45386628	30	1.9	31	89	3	93	28	3	3	64	1.26
45389056--45389313	68	3.8	68	82	1	284	36	17	18	26	1.94
45389815--45389905	25	3.7	25	71	14	73	56	3	3	37	1.32
45391494--45391524	16	1.9	16	100	0	62	70	6	9	12	1.31
45393807--45393904	23	4.3	23	93	2	171	32	26	20	20	1.97
45393807--45393904	45	2.2	46	92	3	171	32	26	20	20	1.97
45401120--45401217	23	4.3	23	90	2	162	31	26	21	20	1.98
45401127--45401215	45	2.0	45	95	0	160	31	26	22	19	1.97
45404585--45404739	38	4.1	38	82	0	186	12	21	30	35	1.91
45404730--45404839	41	2.7	41	84	0	130	20	18	21	40	1.92
45404775--45404862	41	2.1	41	82	0	104	20	19	21	38	1.93
45415094--45415147	23	2.4	22	82	11	65	24	1	5	68	1.21
45420095--45420235	41	3.4	41	85	1	194	29	16	22	31	1.96
45421033--45421070	16	2.6	14	91	8	58	21	0	31	47	1.51
45421033--45421079	14	3.2	14	84	6	58	21	0	31	46	1.51
45421089--45421229	74	1.9	75	84	10	191	21	2	29	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45421203--45421231	7	4.1	7	100	0	58	13	0	27	58	1.36
45421339--45421437	7	13.7	7	70	6	54	22	1	36	40	1.61
45421343--45421407	29	2.2	30	83	8	80	23	0	36	40	1.55
45421318--45421512	80	2.4	80	87	3	257	26	1	36	36	1.64
45421786--45421821	17	2.2	17	90	5	56	25	0	2	72	0.98
45424569--45424737	92	1.8	92	92	0	284	28	28	20	21	1.98
45424564--45424734	45	3.7	46	77	12	190	29	28	20	22	1.98
45432108--45432278	93	1.8	93	92	0	288	29	28	19	22	1.98
45432103--45432275	46	3.7	46	76	10	181	30	27	19	22	1.98
45433731--45433875	48	3.0	48	88	5	222	24	18	26	30	1.98
45433731--45433894	48	3.4	48	81	7	199	25	20	25	29	1.99
45444307--45444380	29	2.6	29	91	4	114	48	1	0	50	1.09
45444307--45444389	29	2.9	26	77	21	69	46	1	0	51	1.08
45444307--45444391	15	5.8	15	72	19	81	47	1	0	51	1.08
45444496--45444791	44	6.5	45	78	11	248	46	13	1	37	1.54
45444497--45444769	71	4.3	63	75	13	220	46	14	1	38	1.54
45444496--45444713	71	3.1	71	85	4	262	46	14	1	36	1.56
45444675--45444756	43	1.9	43	92	0	137	46	13	0	40	1.43
45444496--45444774	9	30.6	9	77	9	208	46	14	1	37	1.55
45450410--45450465	21	2.7	21	91	0	85	28	21	48	1	1.60
45450854--45451031	43	4.2	42	78	5	160	28	25	16	29	1.97
45459254--45459290	13	2.8	13	95	0	65	35	8	18	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45460005--45460031	3	9.0	3	100	0	54	66	0	0	33	0.92
45463051--45463116	33	2.0	33	100	0	132	33	18	30	18	1.94
45464549--45464707	27	5.9	27	80	11	175	34	22	23	19	1.96
45464567--45464707	54	2.6	54	90	2	230	34	23	23	18	1.96
45464811--45464886	26	2.8	27	88	4	100	31	13	21	34	1.91
45466314--45466395	26	3.2	26	96	0	146	36	25	6	31	1.81
45472978--45473280	47	6.6	48	71	14	144	24	29	19	26	1.98
45473066--45473224	85	1.9	86	81	9	200	23	29	20	26	1.99
45474445--45474497	20	2.7	20	90	0	88	16	30	32	20	1.95
45474572--45474596	13	1.9	13	100	0	50	0	48	28	24	1.52
45475613--45475697	42	2.0	42	95	0	152	35	20	12	31	1.90
45485689--45485728	20	2.0	20	90	0	62	32	12	15	40	1.84
45488011--45488061	25	2.0	26	88	3	77	37	9	11	41	1.75
45489255--45489400	57	2.6	56	80	9	161	30	19	18	32	1.96
45497568--45497741	46	3.8	46	76	13	194	22	18	29	29	1.98
45497563--45497733	93	1.8	93	92	0	288	22	19	29	29	1.98
45505531--45505995	40	11.6	40	94	0	779	27	20	27	24	1.99
45509033--45509208	46	3.8	46	78	10	205	21	19	28	29	1.98
45509030--45509200	93	1.8	93	93	0	297	21	20	29	28	1.98
45515063--45515179	28	4.3	27	82	7	146	35	21	22	21	1.96
45517266--45517290	12	2.1	12	100	0	50	76	0	0	24	0.80
45523328--45523359	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45523837--45523925	45	2.0	46	84	2	117	29	22	6	41	1.79
45533276--45533306	15	2.1	15	100	0	62	48	12	12	25	1.77
45534548--45534581	17	2.0	17	94	0	59	58	8	11	20	1.59
45535931--45535989	22	2.7	22	78	0	64	33	22	23	20	1.97
45536363--45536414	27	1.9	27	92	0	86	26	19	17	36	1.94
45536399--45536531	27	4.9	27	84	3	169	33	9	19	37	1.85
45536372--45536531	54	3.0	54	83	5	155	32	11	18	36	1.88
45536373--45536538	27	6.2	26	75	9	136	31	11	20	36	1.88
45543834--45543858	9	2.8	9	100	0	50	52	0	0	48	1.00
45545725--45546130	6	66.8	6	72	16	295	48	13	17	20	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320