genome.fa.s12.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  196  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65412618--65412649	15	2.1	15	94	0	55	15	6	9	68	1.36
65416254--65416314	30	2.0	30	87	0	86	39	6	22	31	1.80
65432782--65432850	36	1.9	36	84	0	93	27	21	17	33	1.96
65432971--65433024	25	2.3	23	84	9	65	55	9	0	35	1.32
65437783--65437901	5	22.8	5	73	19	84	73	0	3	22	1.04
65437783--65437903	11	11.0	11	70	21	53	72	0	3	23	1.04
65437791--65437901	21	5.3	20	77	8	98	72	0	3	22	1.05
65437848--65437901	16	3.6	16	85	11	62	79	0	3	16	0.87
65437812--65437902	46	2.0	44	81	14	105	74	0	3	21	0.96
65443421--65443542	53	2.3	53	82	2	138	33	25	16	24	1.96
65443461--65443605	53	2.8	54	85	9	180	33	26	15	25	1.95
65443469--65443605	54	2.7	50	84	9	156	33	24	15	26	1.95
65448226--65448446	40	5.6	40	82	2	241	25	23	26	24	2.00
65451187--65451358	47	3.6	47	78	5	159	31	27	15	25	1.96
65451312--65451517	53	3.9	54	83	6	235	32	25	15	26	1.95
65454506--65454682	27	6.6	27	78	5	144	29	28	15	25	1.96
65454506--65454682	54	3.3	54	79	5	171	29	28	15	25	1.96
65462457--65462634	27	6.6	27	81	5	171	28	28	16	26	1.97
65462478--65462633	82	1.9	81	86	3	224	28	28	16	26	1.97
65479017--65479061	16	2.8	16	82	0	54	60	2	4	33	1.29
65479421--65479625	91	2.3	90	83	6	258	41	20	7	30	1.80
65479647--65479692	19	2.3	21	85	7	60	73	0	6	19	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65479995--65480078	27	3.0	29	72	13	93	32	4	3	59	1.35
65480060--65480096	19	1.9	19	88	0	56	27	5	2	64	1.28
65479957--65480093	56	2.5	55	80	7	161	29	7	5	58	1.47
65480191--65480381	89	2.1	90	86	6	280	32	10	20	35	1.88
65484397--65484452	27	2.1	27	100	0	112	37	3	30	28	1.74
65493209--65493481	40	6.8	40	91	0	440	22	27	20	29	1.98
65501941--65502213	40	6.8	40	91	0	429	23	27	20	29	1.98
65501941--65502213	80	3.4	80	95	0	474	23	27	20	29	1.98
65507371--65507479	27	4.0	27	84	2	94	42	16	12	28	1.85
65507347--65507476	54	2.4	54	81	2	136	43	16	14	25	1.86
65515238--65515368	48	2.7	48	82	6	142	35	25	16	22	1.95
65518100--65518140	18	2.3	18	91	4	66	43	0	14	41	1.45
65522181--65522308	48	2.7	48	85	6	154	34	25	19	20	1.96
65529414--65529489	40	1.9	40	81	5	91	71	6	2	19	1.21
65535811--65535845	16	2.2	16	89	0	52	45	11	17	25	1.81
65536796--65536853	30	1.9	30	96	0	107	37	10	24	27	1.88
65538451--65538579	42	3.0	42	79	2	150	31	13	25	29	1.94
65540220--65540397	27	6.6	27	84	3	205	29	28	15	26	1.96
65540241--65540396	82	1.9	81	88	3	233	29	28	15	26	1.96
65548324--65548501	27	6.6	27	84	3	205	29	28	15	26	1.96
65548345--65548500	82	1.9	81	88	3	233	29	28	15	26	1.96
65551008--65551066	17	3.4	17	70	21	50	30	1	28	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65552770--65552917	40	3.7	40	91	0	242	23	18	28	29	1.98
65557357--65558619	637	2.0	635	80	7	1403	30	20	13	35	1.91
65559333--65559504	40	4.3	41	78	6	185	29	26	20	23	1.99
65577475--65577659	40	4.6	40	81	3	228	24	26	23	25	2.00
65577439--65577659	80	2.8	79	83	4	241	24	25	23	26	2.00
65580956--65581009	27	2.0	27	85	0	72	40	7	12	38	1.72
65581255--65581487	49	4.7	50	79	2	254	25	18	26	29	1.98
65581255--65581533	150	1.9	150	84	4	384	26	18	26	29	1.98
65585091--65585129	19	2.1	19	95	0	69	53	12	5	28	1.60
65589328--65589550	39	5.7	40	84	8	257	25	21	27	25	2.00
65589328--65589550	79	2.8	81	82	9	273	25	21	27	25	2.00
65589328--65589583	79	3.3	79	80	10	208	26	21	27	24	1.99
65591555--65591732	27	6.6	27	84	3	205	29	28	15	26	1.96
65591576--65591731	82	1.9	81	88	3	233	29	28	15	26	1.96
65592212--65592237	12	2.2	12	100	0	52	42	0	7	50	1.31
65600817--65601039	39	5.7	40	85	8	266	25	22	27	24	2.00
65600817--65601039	79	2.8	81	84	9	282	25	22	27	24	2.00
65600817--65601072	79	3.3	79	81	10	217	26	21	27	24	1.99
65606654--65606809	27	5.9	27	83	2	190	28	21	8	41	1.82
65606627--65606835	53	3.9	53	83	4	224	31	21	8	38	1.84
65606627--65606835	80	2.6	80	77	3	215	31	21	8	38	1.84
65606787--65607119	27	12.3	27	77	8	169	41	21	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65606624--65606873	107	2.3	107	74	5	254	34	22	8	35	1.83
65606801--65607023	54	4.2	53	80	3	187	42	21	7	29	1.79
65607141--65607209	27	2.6	27	83	4	86	34	21	23	20	1.96
65607162--65607236	27	2.8	27	87	4	107	32	17	25	25	1.97
65608041--65608215	26	6.8	26	89	0	255	27	21	22	29	1.99
65608041--65608215	52	3.4	52	92	1	282	27	21	22	29	1.99
65608434--65608538	31	3.4	31	97	0	192	26	18	26	28	1.98
65610846--65611004	27	5.9	27	83	0	201	31	20	6	40	1.79
65610835--65611029	54	3.6	54	85	0	228	33	20	7	38	1.80
65610833--65611029	81	2.4	81	78	0	223	34	20	7	38	1.80
65610995--65611199	80	2.5	81	85	3	254	40	21	8	28	1.83
65610990--65611313	27	12.0	27	78	9	187	39	19	9	31	1.83
65611352--65611413	27	2.3	27	100	0	124	30	22	29	17	1.97
65611344--65611435	27	3.4	27	87	3	114	33	18	26	21	1.96
65611750--65611789	21	2.0	21	95	5	73	25	20	32	22	1.98
65612172--65612202	16	1.9	16	93	0	53	29	19	16	35	1.93
65612236--65612410	26	6.8	26	88	0	255	28	22	21	28	1.99
65612628--65612706	31	2.5	31	93	0	140	26	16	26	30	1.97
65613578--65613685	43	2.5	42	80	7	121	33	34	17	14	1.91
65613588--65613685	42	2.3	43	80	5	119	32	35	17	14	1.90
65618080--65619367	659	2.0	660	95	0	2312	32	24	13	29	1.93
65629615--65629707	43	2.2	43	84	3	116	26	15	23	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65631367--65631397	16	1.9	16	93	0	53	45	6	19	29	1.75
65637713--65637885	46	3.7	46	75	14	185	22	19	27	31	1.98
65637710--65637880	93	1.8	93	92	2	290	22	19	28	30	1.98
65638109--65638146	19	2.0	20	85	15	53	36	0	23	39	1.55
65639668--65639816	43	3.5	42	79	11	135	26	18	24	31	1.97
65639668--65639806	42	3.2	43	83	7	158	26	17	23	32	1.97
65643978--65644134	43	3.7	43	77	10	160	24	19	25	29	1.98
65654334--65654431	25	4.0	25	72	1	81	32	21	26	19	1.97
65661856--65662119	40	6.7	40	88	5	351	25	21	27	26	1.99
65661908--65662152	120	2.1	118	86	4	341	25	20	27	26	1.99
65669888--65670146	39	6.7	40	85	9	324	25	21	27	25	1.99
65669888--65670144	79	3.3	78	85	8	330	25	21	27	25	1.99
65669940--65670179	115	2.1	118	84	7	312	26	20	27	26	1.99
65669940--65670146	40	5.3	39	88	7	289	25	20	27	26	1.99
65674832--65674957	39	3.2	39	90	0	189	28	29	19	22	1.98
65674794--65674957	78	2.1	78	80	5	181	29	29	20	21	1.98
65682744--65682882	57	2.4	58	81	3	165	29	15	23	30	1.96
65685068--65685092	10	2.5	10	100	0	50	32	12	20	36	1.89
65698109--65698203	41	2.3	41	87	7	131	17	20	24	37	1.93
65705290--65705668	38	9.0	38	69	19	193	32	23	14	29	1.94
65705297--65705588	85	3.4	85	91	0	485	32	23	14	29	1.94
65705420--65705631	47	4.7	47	77	10	226	32	22	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65705505--65705638	48	2.8	48	86	1	171	31	22	16	29	1.96
65705420--65705664	133	1.8	132	87	0	364	32	23	15	28	1.95
65708165--65708227	27	2.3	28	91	2	101	34	30	9	25	1.88
65708165--65708262	28	3.5	28	88	2	126	32	28	12	26	1.92
65716456--65716553	28	3.5	28	90	2	135	31	28	13	26	1.94
65722470--65722565	23	4.2	24	80	12	112	35	19	21	22	1.96
65722449--65722539	45	2.0	45	85	4	121	35	21	20	21	1.96
65722478--65722565	24	3.9	23	79	16	103	35	20	21	22	1.96
65722478--65722565	47	1.9	45	88	4	131	35	20	21	22	1.96
65730304--65730427	29	4.3	29	87	1	169	31	31	12	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320