Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  14  of  320  ( 38372 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3930890--3931056
40
4.1
39
74
11
115
61
1
2
34
1.19
3931564--3931594
16
1.9
16
93
0
53
22
6
3
67
1.28
3931680--3931717
16
2.4
17
82
13
53
23
0
5
71
1.07
3931719--3931804
21
4.2
21
76
5
86
34
3
1
60
1.21
3931722--3931804
30
2.7
31
81
9
107
33
3
1
61
1.21
3933719--3933767
21
2.3
21
89
0
71
24
16
12
46
1.81
3935645--3935747
36
2.9
36
77
0
98
23
32
16
28
1.96
3937586--3937655
21
3.3
21
83
13
90
60
0
2
37
1.12
3937589--3937663
21
3.6
21
82
10
57
60
1
2
36
1.20
3937781--3937805
12
2.1
12
100
0
50
24
0
0
76
0.80
3937942--3938000
9
6.2
9
81
11
64
30
5
0
64
1.15
3937946--3938022
20
3.8
20
81
6
77
31
5
0
63
1.16
3937999--3938062
30
2.1
30
82
5
76
32
4
1
60
1.26
3943553--3943593
19
2.2
18
86
4
55
34
17
0
48
1.47
3951275--3951304
3
10.0
3
100
0
60
66
0
33
0
0.92
3960199--3960223
10
2.5
10
100
0
50
40
8
0
52
1.31
3961305--3961334
14
2.2
14
94
5
53
33
0
3
63
1.11
3981801--3981853
25
2.1
25
96
0
97
52
13
22
11
1.71
3984734--3985081
174
2.0
175
85
2
468
41
21
14
22
1.90
3990620--3990711
46
2.0
46
93
0
157
25
30
18
26
1.98
4003531--4003584
16
3.4
16
81
0
54
72
0
9
18
1.11
4010995--4011108
43
2.7
43
87
1
167
17
21
35
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4015556--4015621
21
3.0
23
73
10
66
45
1
3
50
1.26
4015623--4015672
21
2.5
21
87
6
68
48
0
0
52
1.00
4015742--4015789
10
4.7
10
78
14
53
29
0
2
68
1.01
4015742--4015789
21
2.3
20
86
6
69
29
0
2
68
1.01
4015853--4015885
9
3.8
9
96
4
59
42
0
0
57
0.98
4022148--4022250
30
3.4
30
90
2
154
28
20
26
25
1.99
4024600--4024701
53
1.9
53
80
11
120
63
5
0
30
1.18
4024844--4024895
21
2.5
20
81
12
70
28
1
0
69
0.99
4025095--4025120
13
2.0
13
100
0
52
53
0
0
46
1.00
4025182--4025222
21
1.9
22
85
5
57
56
2
2
39
1.26
4037454--4037523
21
3.5
20
92
5
106
41
0
0
58
0.98
4037686--4037737
22
2.2
24
86
6
81
51
1
0
46
1.12
4037816--4037868
21
2.6
20
84
3
70
60
0
3
35
1.15
4042490--4042697
54
3.9
53
75
10
158
25
24
17
32
1.97
4044664--4044705
21
2.0
22
85
4
59
50
0
2
47
1.14
4044837--4044888
18
2.6
19
82
14
61
59
0
1
38
1.08
4044932--4044999
9
7.2
9
73
25
52
76
2
2
17
1.04
4044935--4045000
5
13.6
5
73
16
50
77
3
3
16
1.02
4044978--4045027
18
2.7
18
84
3
64
74
4
4
18
1.14
4045652--4045700
20
2.5
20
87
12
75
75
8
8
8
1.19
4045838--4045907
22
3.1
22
71
20
56
67
1
30
1
1.08
4046457--4047696
150
8.3
147
89
3
1568
57
6
7
29
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4046612--4046672
13
4.5
13
76
13
61
68
3
1
26
1.14
4046924--4046948
13
1.9
13
100
0
50
80
4
0
16
0.87
4046464--4047696
302
4.1
302
91
2
1868
57
6
7
28
1.51
4047213--4047274
13
4.5
13
72
16
54
69
3
1
25
1.13
4047660--4047720
26
2.3
26
75
10
63
62
6
8
22
1.47
4047552--4047816
120
2.2
120
86
3
354
57
7
7
27
1.53
4047673--4047996
151
2.1
151
91
3
519
57
7
7
28
1.53
4050538--4050576
17
2.3
17
91
8
62
46
10
10
33
1.72
4055453--4055510
15
3.9
15
73
20
50
0
29
0
70
0.87
4055474--4055507
17
2.1
16
88
5
50
0
32
0
67
0.91
4055658--4055699
16
2.5
17
92
7
68
7
7
9
76
1.17
4068799--4068909
47
2.4
47
80
6
127
36
21
15
27
1.93
4072337--4072489
39
3.9
39
79
8
109
26
28
22
22
1.99
4072357--4072520
78
2.1
78
80
5
181
26
28
21
23
1.99
4072395--4072520
39
3.2
39
88
0
180
27
27
19
24
1.99
4096742--4096812
31
2.4
29
81
9
72
22
11
9
56
1.64
4097396--4097510
60
1.9
60
85
7
162
39
4
14
41
1.66
4099246--4099387
58
2.4
58
80
4
171
26
28
21
24
1.99
4099449--4099489
18
2.2
19
87
12
59
31
17
7
43
1.76
4101230--4101282
26
2.0
28
88
7
83
18
7
9
64
1.47
4101236--4101299
26
2.5
26
82
10
69
20
6
7
65
1.40
4102482--4102577
44
2.2
44
86
3
131
45
9
10
34
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4103029--4103148
40
3.0
40
95
0
204
39
12
9
39
1.75
4106024--4106247
46
4.8
46
76
9
222
21
20
27
29
1.98
4106070--4106240
93
1.8
93
89
0
270
21
20
28
29
1.98
4117186--4117214
11
2.6
11
100
0
58
37
6
27
27
1.82
4118776--4118829
15
3.6
14
82
12
63
62
1
1
33
1.16
4118771--4118822
23
2.3
23
80
6
61
61
1
3
32
1.25
4118776--4118829
8
7.1
7
78
14
54
62
1
1
33
1.16
4119021--4119088
30
2.3
29
84
2
82
58
4
4
32
1.37
4118962--4119182
25
9.0
25
70
15
113
55
4
5
34
1.43
4119124--4119181
22
2.5
22
81
13
64
58
3
3
34
1.32
4119664--4119809
30
4.9
29
86
1
175
20
4
47
27
1.68
4125958--4125988
14
2.2
14
100
0
62
29
22
6
41
1.78
4126713--4126886
46
3.8
46
77
14
196
30
29
19
20
1.97
4126721--4126890
92
1.8
93
92
1
288
30
29
20
20
1.97
4127444--4127480
20
1.9
18
89
10
56
35
21
0
43
1.53
4129341--4129495
37
4.2
38
92
3
210
27
29
17
26
1.98
4129631--4130167
48
11.1
48
94
1
921
30
26
6
37
1.81
4134383--4134495
36
3.2
36
75
7
122
26
24
23
24
2.00
4134324--4134495
71
2.4
70
86
3
229
24
24
24
26
2.00
4134342--4134462
35
3.4
34
71
8
100
27
23
23
25
2.00
4137566--4137607
13
3.5
13
75
18
54
23
0
0
76
0.79
4137566--4137615
23
2.2
23
82
7
57
24
2
2
72
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4138137--4138181
22
2.0
22
82
8
54
57
2
22
17
1.50
4138641--4138712
29
2.3
31
83
11
85
52
8
0
38
1.32
4139722--4139753
4
8.0
4
100
0
64
25
0
50
25
1.50
4140868--4140901
17
2.1
17
88
5
52
64
0
0
35
0.94
4143173--4143228
20
2.8
20
82
15
62
44
28
0
26
1.54
4143193--4143235
19
2.1
21
87
8
63
44
27
0
27
1.55
4144985--4145051
11
5.9
11
72
6
53
64
7
2
25
1.34
4159702--4159756
22
2.5
24
80
11
64
52
3
0
43
1.18
4160045--4160088
3
14.3
3
81
13
54
63
2
0
34
1.07
4160935--4161001
35
1.9
35
100
0
134
22
11
49
16
1.78
4165074--4165100
14
1.9
14
100
0
54
59
0
14
25
1.36
4165138--4165164
3
9.0
3
100
0
54
66
0
0
33
0.92
4166137--4166205
35
2.0
35
100
0
138
20
11
50
17
1.76
4168186--4168401
46
4.7
46
78
5
238
23
21
25
29
1.99
4168232--4168402
93
1.8
93
89
0
270
23
21
25
29
1.99
4174880--4174929
13
3.8
13
81
0
64
42
10
0
48
1.37
4177417--4177465
24
2.0
24
84
7
64
48
4
8
38
1.52
4177968--4178125
39
4.1
39
86
1
192
27
22
5
44
1.73
4182649--4182688
17
2.4
17
86
0
53
15
2
2
80
0.93
4188575--4188643
16
4.2
16
96
3
129
37
36
0
26
1.57
4188575--4188643
33
2.1
32
97
2
129
37
36
0
26
1.57
4203664--4203704
21
2.0
21
85
9
57
75
4
12
7
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4204951--4204987
18
2.0
19
85
15
51
62
5
2
29
1.31
4205133--4205183
26
2.0
25
88
7
77
27
17
9
45
1.80
4208562--4208624
31
2.0
32
81
3
74
53
9
1
34
1.43
4211592--4211633
21
1.9
23
85
9
61
26
4
4
64
1.33
4227195--4227250
19
2.7
21
74
17
55
62
3
1
32
1.23
4232148--4232216
21
3.3
21
86
8
95
15
26
17
40
1.89
4239880--4239909
15
2.0
15
93
0
51
26
3
3
66
1.23
4245959--4246011
26
2.0
26
82
7
63
26
15
20
37
1.92
4247496--4247597
26
3.9
26
96
0
186
37
25
4
32
1.77
4254495--4254596
26
3.9
26
96
0
186
37
25
4
32
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320