genome.fa.s12.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  111  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35898750--35898812	21	3.0	21	88	2	90	33	33	3	30	1.74
35900365--35900389	13	1.9	13	100	0	50	64	8	0	28	1.22
35902810--35902856	20	2.3	20	81	0	58	29	34	12	23	1.92
35904969--35905024	21	2.7	21	83	2	69	37	19	25	17	1.94
35914893--35914996	42	2.5	41	80	14	115	11	19	2	66	1.36
35914946--35914979	12	2.8	12	95	0	59	14	26	0	58	1.36
35914904--35915002	18	5.4	18	69	6	56	11	20	2	66	1.32
35914972--35914996	12	2.1	12	100	0	50	8	16	0	76	1.02
35915065--35915121	5	11.0	5	75	20	55	3	17	1	77	1.00
35915065--35915121	16	3.7	14	82	15	60	3	17	1	77	1.00
35915063--35915132	20	3.3	20	73	18	63	4	18	1	75	1.04
35916530--35916584	20	2.8	20	80	0	65	25	25	18	30	1.98
35919779--35919875	30	3.2	30	73	2	88	27	13	27	30	1.94
35921428--35921471	21	2.1	21	86	0	61	29	31	4	34	1.78
35923565--35923598	12	2.8	12	95	0	59	14	26	0	58	1.36
35923517--35923615	42	2.4	42	81	10	114	13	21	1	64	1.33
35923517--35923621	18	5.8	18	69	5	59	12	20	1	64	1.36
35923591--35923615	12	2.1	12	100	0	50	8	16	0	76	1.02
35923691--35923753	15	4.2	14	75	18	56	3	17	1	77	0.97
35923691--35923746	21	2.7	21	81	15	71	1	17	1	78	0.92
35926809--35926883	13	5.5	13	80	13	80	76	4	6	13	1.13
35926809--35926871	14	4.5	14	79	11	67	76	4	4	14	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35926820--35926884	25	2.4	25	87	12	85	73	3	7	15	1.18
35926809--35926900	41	2.2	42	82	3	107	75	5	7	11	1.19
35927963--35927996	18	1.9	18	88	5	52	52	2	35	8	1.47
35932552--35932589	10	3.8	10	83	13	51	26	15	28	28	1.96
35932554--35932599	20	2.3	20	92	0	74	23	17	32	26	1.97
35934146--35934251	48	2.2	48	85	9	137	14	24	1	59	1.45
35935321--35935374	18	2.8	19	75	8	56	9	9	3	77	1.09
35935320--35935374	19	2.8	20	75	10	60	9	9	3	78	1.08
35936839--35936876	10	3.8	10	83	13	51	26	15	28	28	1.96
35936841--35936886	20	2.3	20	92	0	74	23	17	32	26	1.97
35940853--35940949	30	3.2	30	72	2	88	28	12	27	30	1.93
35941364--35941418	26	2.1	26	86	6	76	30	5	16	47	1.69
35943368--35943411	22	2.0	22	95	0	79	34	4	36	25	1.76
35947606--35947660	17	3.2	17	76	5	56	7	12	3	76	1.12
35947611--35947652	18	2.3	18	87	4	57	7	9	2	80	0.97
35950174--35950217	22	2.0	22	95	0	79	34	4	36	25	1.76
35953870--35953927	30	2.0	30	89	3	91	24	0	29	46	1.53
35964540--35964572	15	2.3	15	89	5	50	24	0	21	54	1.45
35968893--35968939	25	1.9	24	86	4	67	74	2	17	6	1.12
35970178--35970360	79	2.3	81	83	7	223	24	22	27	25	2.00
35970179--35970362	40	4.6	40	82	9	207	23	22	28	25	1.99
35970231--35970395	79	2.1	79	83	6	201	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35972081--35972120	20	2.0	20	85	0	53	17	7	27	47	1.74
35975075--35975220	52	2.9	51	89	4	224	26	28	15	28	1.96
35977942--35977987	20	2.3	20	84	0	56	50	2	10	36	1.50
35984536--35984565	16	1.9	16	93	6	53	50	33	10	6	1.62
35986041--35986071	15	2.1	15	93	0	53	25	19	16	38	1.92
35989088--35989127	21	2.0	21	90	5	64	22	30	37	10	1.87
35990258--35990435	49	3.7	47	80	8	180	25	31	17	25	1.97
35990360--35990575	47	4.6	44	75	14	150	25	30	16	27	1.97
35990405--35990575	94	1.8	93	85	7	240	23	28	19	28	1.98
35990695--35990827	71	1.9	71	98	0	257	42	18	6	33	1.74
35992219--35992396	27	6.6	27	79	3	115	28	28	16	26	1.97
35992219--35992396	54	3.3	55	80	10	204	28	28	16	26	1.97
35992240--35992395	82	1.9	81	85	3	215	28	28	16	26	1.97
36000184--36000361	27	6.6	27	79	3	115	28	28	16	26	1.97
36000184--36000361	54	3.3	55	80	10	204	28	28	16	26	1.97
36000205--36000360	82	1.9	81	85	3	215	28	28	16	26	1.97
36013517--36013618	27	3.8	26	83	5	105	36	21	22	19	1.95
36013777--36013841	22	3.0	22	80	8	78	33	21	23	21	1.97
36014268--36014409	27	5.3	27	87	0	185	23	20	21	34	1.97
36014286--36014464	54	3.3	55	83	6	163	24	15	21	38	1.92
36014365--36014492	27	4.7	27	79	9	111	24	8	23	43	1.81
36014394--36014949	27	20.6	27	79	5	342	31	8	21	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36014367--36014949	108	5.4	106	75	7	417	31	8	21	39	1.83
36019776--36020277	47	10.6	47	92	1	788	32	8	29	29	1.86
36019776--36020277	96	5.3	96	91	3	795	32	8	29	29	1.86
36019776--36020277	143	3.5	143	92	1	810	32	8	29	29	1.86
36030074--36030198	49	2.5	49	84	6	155	24	20	31	24	1.98
36032942--36032982	22	1.9	22	90	5	66	17	26	43	12	1.84
36034202--36034329	47	2.8	45	85	11	170	21	30	21	27	1.98
36041687--36041949	47	5.7	45	72	13	175	25	28	18	27	1.98
36041684--36041950	94	2.9	88	79	14	292	25	28	18	27	1.98
36044897--36044957	30	2.0	30	87	0	86	39	6	22	31	1.80
36045692--36045875	67	2.8	64	75	10	178	29	17	29	22	1.97
36050008--36050045	17	2.2	17	86	9	51	28	15	13	42	1.85
36053264--36053487	40	5.7	40	85	7	264	25	22	27	24	2.00
36053317--36053487	78	2.2	78	88	4	229	25	22	28	24	2.00
36053317--36053520	79	2.6	79	82	5	209	25	21	27	24	1.99
36058738--36058789	26	2.0	25	85	14	70	30	26	5	36	1.80
36062214--36062377	42	3.8	42	74	12	132	29	24	18	27	1.98
36062276--36062417	48	3.0	50	88	4	197	29	24	18	27	1.98
36073905--36074129	40	5.7	40	87	5	305	24	22	27	26	2.00
36081915--36082129	39	5.6	40	81	12	227	25	22	26	25	2.00
36081965--36082162	75	2.6	76	87	7	258	25	21	27	25	1.99
36081915--36082162	114	2.2	118	81	10	282	26	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36094269--36094296	13	2.2	13	100	0	56	28	0	14	57	1.38
36095710--36095980	40	6.8	40	91	3	447	24	21	24	29	1.99
36095694--36095980	80	3.6	80	95	0	504	25	20	24	28	1.99
36110961--36111242	50	5.6	49	76	8	248	29	24	18	26	1.98
36110961--36111193	101	2.3	99	83	3	279	27	25	19	27	1.99
36113040--36113089	23	2.2	23	82	10	59	34	10	0	56	1.33
36130244--36130358	43	2.7	43	79	4	126	26	20	26	27	1.99
36130765--36130824	30	2.0	30	100	0	120	30	23	20	26	1.98
36140703--36140737	17	2.1	17	100	0	70	48	28	17	5	1.69
36145206--36145256	23	2.2	23	92	0	84	43	3	11	41	1.60
36148663--36148746	28	3.0	28	89	1	123	45	30	4	19	1.71
36148625--36148719	23	3.9	23	75	15	84	46	33	4	15	1.66
36151442--36151474	16	2.1	16	94	0	57	39	12	9	39	1.74
36151599--36151636	12	3.3	12	89	7	53	68	5	5	21	1.29
36154812--36155032	40	5.6	40	82	2	250	24	25	23	25	2.00
36162929--36163112	40	4.6	40	82	1	226	23	25	23	26	2.00
36182098--36182158	30	2.0	30	87	0	86	31	22	8	37	1.84
36192094--36192225	40	3.3	40	86	2	176	27	28	21	23	1.99
36192094--36192278	40	4.7	40	81	5	124	27	27	21	24	1.99
36192210--36192287	40	1.9	41	82	10	97	26	28	21	23	1.99
36200000--36200106	39	2.7	39	89	1	151	27	26	20	26	1.99
36199998--36200128	40	3.3	40	85	2	174	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36217096--36217142	24	1.9	25	91	4	78	34	25	14	25	1.94
36217181--36217237	9	5.9	9	73	15	51	36	7	21	35	1.80
36217179--36217241	20	3.2	20	95	0	117	38	11	19	31	1.86
36217295--36217437	23	6.0	24	85	10	195	29	20	22	27	1.98
36217295--36217416	47	2.6	49	93	3	205	30	19	21	28	1.98
36217630--36217693	31	2.1	31	90	0	101	35	15	23	25	1.94
36225300--36225356	9	5.9	9	73	15	51	35	8	21	35	1.84
36225298--36225360	20	3.2	20	95	0	117	36	12	19	31	1.89
36226863--36227161	40	7.5	40	89	3	408	25	28	22	23	1.99
36229037--36229100	31	2.1	31	90	0	101	35	15	23	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320