genome.fa.s12.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  151  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49810345--49812842	833	3.0	829	86	2	3416	24	20	11	43	1.84
49826126--49826303	27	6.6	27	83	3	205	26	15	28	29	1.96
49826127--49826282	82	1.9	81	88	3	233	26	15	28	29	1.96
49826123--49826303	82	2.2	81	83	2	229	27	15	27	29	1.96
49844987--49845164	27	6.6	27	82	3	196	26	14	28	30	1.95
49844988--49845143	82	1.9	81	86	3	224	26	14	28	30	1.95
49844984--49845164	82	2.2	81	82	2	220	27	14	27	30	1.95
49848992--49849017	8	3.2	8	100	0	52	23	0	0	76	0.78
49852130--49852159	12	2.5	12	94	0	51	33	40	20	6	1.78
49852977--49853052	23	3.4	22	82	7	82	14	10	27	47	1.77
49854583--49854624	21	2.0	21	85	0	57	38	11	7	42	1.69
49856980--49857153	40	4.4	40	89	3	228	25	27	22	24	2.00
49858723--49858876	50	3.1	50	95	1	276	39	22	7	30	1.82
49860667--49860703	20	1.9	18	89	10	56	35	21	0	43	1.53
49861431--49861480	25	2.0	25	84	7	66	44	4	14	38	1.63
49861651--49861704	20	2.6	21	88	5	74	35	9	7	48	1.63
49861621--49861696	30	2.5	30	80	2	89	35	7	9	47	1.65
49861992--49862043	15	3.6	14	76	12	52	26	1	1	69	1.10
49864574--49864614	22	1.9	21	90	5	64	56	19	0	24	1.42
49870586--49870623	3	12.7	3	100	0	76	31	0	0	68	0.90
49877875--49877970	28	3.3	27	73	19	86	26	25	19	29	1.99
49877869--49878017	60	2.5	61	82	7	171	26	23	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49878007--49878052	20	2.3	20	81	3	58	30	30	15	23	1.95
49882502--49882539	15	2.5	15	84	12	51	0	21	0	78	0.74
49891197--49891272	37	2.1	37	89	0	116	26	32	18	22	1.97
49891393--49891688	47	6.2	47	88	3	421	29	31	8	31	1.86
49891395--49891688	97	3.1	95	88	2	428	29	30	8	31	1.86
49893320--49893397	39	2.0	39	94	0	138	37	29	10	23	1.88
49896810--49896985	58	3.0	58	94	0	316	36	16	14	32	1.89
49898622--49898651	15	2.0	15	93	0	51	40	10	16	33	1.82
49900895--49901127	115	2.0	115	96	1	432	38	14	12	34	1.83
49918592--49918645	20	2.7	20	82	0	63	24	20	18	37	1.94
49918592--49918665	30	2.5	30	86	8	98	21	20	18	39	1.93
49918592--49918656	20	3.2	20	71	16	53	23	21	16	38	1.93
49920251--49920321	12	5.5	12	74	19	54	71	4	7	16	1.24
49920251--49920337	42	2.1	41	81	6	97	71	5	6	16	1.28
49921368--49921455	6	14.3	6	68	9	52	69	2	20	7	1.25
49921418--49921473	14	4.2	13	80	15	53	71	0	17	10	1.14
49921369--49921455	18	4.7	18	72	9	77	68	2	20	8	1.26
49921405--49921467	14	4.2	16	82	15	66	69	0	22	7	1.13
49921470--49921532	33	1.9	33	84	12	85	55	6	25	12	1.60
49923309--49923362	20	2.7	20	82	0	63	24	20	18	37	1.94
49923309--49923382	30	2.5	30	86	8	98	21	20	18	39	1.93
49923309--49923373	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49928518--49928695	27	6.6	27	85	3	214	26	14	28	30	1.95
49928519--49928674	82	1.9	81	89	3	242	26	14	28	30	1.95
49928515--49928695	82	2.2	81	84	2	238	27	14	27	30	1.95
49932972--49933019	20	2.4	20	67	0	51	33	18	27	20	1.96
49934661--49934692	12	2.7	12	95	0	55	18	21	0	59	1.38
49934696--49934790	6	15.7	6	68	12	52	5	18	3	72	1.17
49935862--49935891	12	2.5	12	100	0	60	13	0	6	80	0.91
49937409--49937456	20	2.4	20	67	0	51	33	18	27	20	1.96
49943227--49943264	10	3.8	10	83	13	51	26	15	28	28	1.96
49943229--49943275	20	2.3	20	92	0	76	23	17	34	25	1.96
49947429--49947475	20	2.3	21	85	10	71	25	17	31	25	1.97
49947680--49947727	15	3.3	15	73	5	53	29	0	27	43	1.55
49947674--49947717	14	3.1	14	74	6	52	27	0	34	38	1.57
49947674--49947733	29	2.1	29	93	0	102	28	0	30	41	1.56
49948708--49948752	14	3.3	14	78	6	56	48	15	0	35	1.45
49950146--49950191	20	2.3	20	84	0	56	23	19	17	39	1.92
49950138--49950211	30	2.5	30	84	8	80	22	20	18	37	1.94
49951796--49951823	10	2.8	10	100	0	56	92	0	0	7	0.37
49951830--49951893	13	4.9	13	74	11	51	73	4	14	7	1.22
49951844--49951910	29	2.4	26	79	16	71	73	5	16	4	1.20
49951870--49951908	14	2.8	14	80	0	51	69	5	23	2	1.21
49952932--49953049	12	9.8	12	68	18	50	70	3	18	7	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49952949--49953052	18	5.6	18	75	5	82	71	3	18	6	1.24
49952945--49953052	6	17.7	6	70	6	74	71	3	18	6	1.23
49953013--49953050	13	2.8	13	82	17	51	73	0	18	7	1.06
49953014--49953064	21	2.4	21	74	6	50	74	1	17	5	1.11
49953067--49953129	33	1.9	33	84	12	85	55	6	25	12	1.60
49956053--49956099	20	2.3	20	85	0	67	21	12	36	29	1.91
49956424--49956469	20	2.3	20	84	0	56	23	19	17	39	1.92
49956426--49956489	30	2.1	30	85	5	85	23	20	17	39	1.92
49960180--49960226	12	4.0	12	83	13	62	17	2	4	76	1.04
49960165--49960208	19	2.3	19	80	7	54	20	4	6	68	1.31
49960185--49960226	22	1.9	22	90	0	66	16	2	4	76	1.07
49962881--49962924	10	4.1	10	86	13	61	84	0	4	11	0.77
49962880--49962924	22	2.0	22	87	8	65	84	0	4	11	0.76
49965161--49965221	18	3.0	19	75	24	54	60	3	21	14	1.48
49967055--49967079	13	1.9	13	100	0	50	64	8	0	28	1.22
49970189--49970407	47	4.7	48	80	8	229	25	30	16	28	1.97
49970195--49970407	94	2.3	93	87	4	295	25	30	16	28	1.97
49976344--49976400	12	4.6	12	77	14	53	71	1	8	17	1.19
49977342--49977379	15	2.4	16	86	13	60	71	0	21	7	1.11
49977462--49977495	18	1.9	18	88	5	52	52	2	35	8	1.47
50000586--50000610	12	2.1	12	100	0	50	76	0	8	16	1.02
50000612--50000678	30	2.2	30	81	5	82	55	1	23	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50005766--50005832	34	2.0	34	93	0	116	22	8	11	56	1.63
50008181--50008214	17	2.0	17	100	0	68	35	23	17	23	1.95
50013714--50013753	21	1.9	21	85	10	55	30	10	25	35	1.88
50019679--50019754	26	2.9	26	88	0	107	39	9	19	31	1.83
50023094--50023152	30	2.0	30	83	6	75	28	23	3	44	1.70
50036169--50036246	39	2.0	39	89	0	120	34	21	12	30	1.91
50039856--50040002	47	3.1	47	89	5	224	32	10	28	28	1.90
50039970--50040032	30	2.1	30	100	0	126	28	12	26	31	1.93
50039877--50040280	126	3.1	127	88	8	514	33	9	28	29	1.88
50039925--50040081	77	2.0	78	93	2	271	32	11	26	29	1.91
50040000--50040441	47	9.4	47	93	1	740	32	8	29	29	1.87
50040560--50040712	37	4.1	37	92	0	243	21	19	32	26	1.97
50042578--50042723	43	3.4	43	100	0	292	22	15	35	26	1.94
50042705--50042778	29	2.6	29	89	4	105	25	16	32	25	1.96
50043089--50043292	40	5.1	40	88	3	252	24	22	25	26	2.00
50046675--50047136	47	9.7	47	91	2	719	32	9	29	28	1.88
50047255--50047370	37	3.1	37	89	0	178	23	19	31	25	1.98
50056054--50056111	6	9.5	6	73	3	53	15	5	3	75	1.11
50063723--50063777	29	1.9	29	88	3	85	41	1	5	50	1.36
50063725--50063785	29	2.1	28	81	3	68	47	1	3	47	1.28
50065171--50065204	18	1.9	17	94	5	59	64	0	8	26	1.22
50067935--50067959	13	1.9	13	100	0	50	56	16	12	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50067970--50068076	34	3.2	33	82	5	115	35	8	11	44	1.70
50068206--50068247	22	1.9	22	85	0	57	21	21	21	35	1.96
50068254--50068401	62	2.4	63	82	8	196	31	20	11	35	1.89
50071842--50071906	20	3.3	19	81	12	78	26	4	7	61	1.43
50072232--50072456	20	11.6	20	70	13	105	20	12	7	59	1.57
50072328--50072456	58	2.2	58	84	4	161	19	11	8	60	1.56
50078087--50078152	33	2.0	33	90	0	105	34	18	4	42	1.70
50080659--50081059	43	9.4	43	88	1	567	15	31	36	16	1.90
50080659--50081107	170	2.6	170	84	4	582	16	31	35	16	1.92
50080659--50081107	43	10.5	42	84	8	475	16	31	35	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320