Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  158  of  320  ( 38372 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52219282--52219306
12
2.1
12
100
0
50
24
8
32
36
1.84
52223028--52223178
40
3.8
39
87
4
196
22
28
25
23
1.99
52229324--52229623
49
6.6
45
84
8
260
30
26
14
29
1.95
52229391--52229623
49
4.8
49
86
4
280
30
26
13
28
1.94
52229406--52229644
95
2.5
97
81
8
274
30
26
14
28
1.95
52229651--52229762
31
3.6
31
90
0
179
25
27
19
26
1.99
52229738--52229914
50
3.5
50
86
3
239
25
20
16
36
1.94
52240508--52240547
20
2.0
21
85
14
57
75
5
2
17
1.10
52243237--52243304
1
68.0
1
76
0
64
88
8
2
0
0.62
52243236--52243306
35
2.1
34
86
7
99
85
11
2
0
0.69
52251378--52251415
11
3.6
11
79
13
53
55
5
2
36
1.37
52251298--52251395
38
2.5
39
74
9
94
54
5
9
31
1.54
52251380--52251451
20
3.5
20
76
12
67
58
4
4
33
1.36
52251842--52251887
22
2.1
22
100
0
92
60
4
0
34
1.16
52251834--52251883
22
2.4
21
87
9
75
58
4
2
36
1.29
52253852--52253876
13
1.9
13
100
0
50
48
12
16
24
1.79
52253875--52254242
75
4.8
73
75
14
258
31
19
16
32
1.94
52254252--52254283
14
2.3
14
94
0
55
65
3
18
12
1.38
52266699--52266799
37
2.6
37
74
10
87
55
3
8
31
1.49
52267711--52267749
19
2.0
20
90
5
62
46
0
53
0
1.00
52269613--52269661
21
2.3
21
83
10
64
73
2
4
20
1.10
52269609--52269661
4
12.8
4
81
15
63
73
1
3
20
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52273342--52273405
32
2.0
31
81
3
74
46
1
7
43
1.42
52279838--52279896
16
3.7
16
79
0
64
50
16
22
10
1.75
52279838--52279874
8
4.6
8
89
0
56
51
18
24
5
1.67
52279853--52279900
24
2.0
23
84
4
60
47
14
25
12
1.79
52279993--52280030
19
2.0
19
89
0
58
31
18
34
15
1.92
52280107--52280214
29
3.8
29
79
6
105
31
12
28
26
1.93
52280112--52280224
58
2.0
57
82
5
138
30
14
30
25
1.95
52284610--52284689
29
2.8
29
80
0
88
32
16
27
23
1.96
52284599--52284711
58
2.0
57
82
1
136
31
15
27
25
1.95
52289032--52289056
12
2.1
12
100
0
50
36
40
16
8
1.77
52295843--52295895
6
8.8
6
100
0
106
67
0
0
32
0.91
52297506--52297532
4
6.8
4
100
0
54
77
0
0
22
0.76
52297543--52297590
19
2.5
19
75
0
51
64
0
6
29
1.18
52300762--52300799
20
1.9
20
94
0
67
15
28
34
21
1.94
52303116--52303226
42
2.6
43
78
4
118
25
26
22
26
2.00
52305989--52306031
22
2.0
22
85
0
59
62
0
4
32
1.15
52312381--52312443
23
2.7
23
77
0
81
42
7
0
49
1.32
52312366--52312454
23
4.0
23
71
9
69
43
5
1
49
1.33
52313067--52313118
16
3.4
15
74
10
52
48
0
0
51
1.00
52313077--52313124
16
3.0
16
75
6
53
52
0
0
47
1.00
52313635--52313700
21
3.0
21
82
8
62
10
1
30
57
1.42
52313626--52313698
23
3.2
23
77
13
71
9
1
28
60
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52339869--52340051
40
4.6
40
90
2
273
26
26
21
24
2.00
52339869--52340051
79
2.3
80
90
3
282
26
26
21
24
2.00
52344381--52344522
57
2.5
58
82
5
164
31
19
19
29
1.96
52346502--52346540
20
2.0
20
89
0
60
35
7
12
43
1.72
52351658--52351743
30
2.9
30
77
5
86
27
24
17
30
1.97
52354387--52354585
47
4.2
47
87
2
272
28
31
8
31
1.87
52354402--52354584
96
1.9
94
88
2
276
28
32
8
30
1.87
52357055--52357089
16
2.2
16
100
0
70
37
5
11
45
1.64
52360298--52360486
49
3.8
48
79
6
216
30
26
17
25
1.97
52360297--52360489
100
1.9
100
92
0
323
30
26
18
25
1.98
52360740--52360793
27
2.0
27
85
0
72
38
14
7
38
1.75
52363271--52363340
27
2.6
27
95
2
113
31
28
12
27
1.93
52363271--52363368
28
3.5
28
90
2
135
31
28
13
26
1.94
52367246--52367302
19
2.8
20
75
20
55
50
0
3
45
1.18
52367380--52367420
11
3.6
11
90
3
55
0
14
2
82
0.76
52368275--52368332
28
2.1
28
100
0
116
48
6
6
37
1.57
52372373--52372406
18
1.9
18
88
5
52
55
0
11
32
1.36
52372464--52372502
13
2.9
14
80
7
53
46
0
0
53
1.00
52373033--52373062
15
1.9
15
93
6
51
40
0
0
60
0.97
52378288--52378366
32
2.4
32
85
6
106
16
41
5
36
1.70
52386189--52386408
45
5.0
45
90
2
322
24
23
28
24
2.00
52388074--52388546
48
9.9
48
77
5
411
24
28
18
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52388074--52388547
96
4.9
97
79
5
473
25
28
18
27
1.98
52391836--52391910
34
2.2
34
100
0
150
28
16
26
29
1.96
52393779--52394000
40
5.6
40
95
1
385
26
27
22
23
2.00
52397718--52397987
46
5.7
48
82
4
284
25
18
32
23
1.97
52398295--52398350
26
2.1
26
80
9
60
30
17
16
35
1.92
52426144--52426189
15
2.9
15
84
9
56
84
2
10
2
0.79
52426176--52426214
17
2.3
17
81
0
51
71
5
15
7
1.26
52426220--52426257
13
2.8
13
82
17
51
73
0
18
7
1.06
52426221--52426271
21
2.4
21
74
6
50
74
1
17
5
1.11
52432809--52432854
20
2.3
20
84
0
56
23
19
17
39
1.92
52432801--52432871
30
2.4
30
83
9
74
23
19
18
38
1.93
52439353--52439459
48
2.2
48
83
9
139
14
24
1
58
1.46
52439434--52439546
18
6.4
17
73
14
77
14
24
2
58
1.49
52440487--52440517
11
2.8
11
100
0
62
16
0
6
77
0.97
52442040--52442087
20
2.4
20
67
0
51
33
18
27
20
1.96
52444700--52444757
29
2.0
29
89
0
89
37
8
27
25
1.85
52448195--52448228
11
2.9
12
91
8
61
17
8
0
73
1.08
52448199--52448238
11
3.8
11
93
6
66
10
10
0
80
0.92
52448199--52448238
20
1.9
20
90
10
62
10
10
0
80
0.92
52448552--52448614
21
3.0
21
88
2
90
30
3
33
33
1.74
52450297--52450351
12
4.6
12
81
6
58
76
5
3
14
1.10
52450297--52450350
23
2.3
23
87
6
74
75
5
3
14
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52450393--52450445
25
2.1
26
89
3
81
71
3
11
13
1.26
52454322--52454394
20
3.7
20
79
1
76
24
26
16
32
1.96
52456684--52456723
11
3.6
11
86
6
55
70
5
7
17
1.30
52456684--52456729
22
2.1
22
88
8
67
67
4
8
19
1.35
52456683--52456729
12
4.2
11
81
13
60
68
4
8
19
1.33
52461174--52461270
30
3.2
30
75
2
106
28
15
26
28
1.96
52463528--52463577
6
8.2
6
81
16
50
2
20
2
76
0.99
52463517--52463587
37
1.9
37
86
11
101
2
18
2
76
1.04
52463513--52463573
16
3.8
16
77
14
63
3
19
1
75
1.03
52464501--52464552
12
4.6
11
81
11
52
7
9
3
78
1.06
52466286--52466388
30
3.4
29
69
6
89
31
14
25
29
1.95
52468780--52468840
30
2.0
30
83
0
77
31
22
4
40
1.75
52472221--52472274
20
2.7
20
82
0
63
24
20
18
37
1.94
52472221--52472294
30
2.5
30
86
8
98
21
20
18
39
1.93
52472221--52472285
20
3.2
20
71
16
53
23
21
16
38
1.93
52473952--52473996
22
2.0
22
86
0
63
82
2
11
4
0.91
52473952--52473987
10
3.8
9
89
10
54
86
2
8
2
0.77
52475011--52475044
18
1.9
18
88
5
52
52
2
35
8
1.47
52476308--52476361
20
2.7
20
82
0
63
24
20
18
37
1.94
52476308--52476381
30
2.5
30
86
8
98
21
20
18
39
1.93
52476308--52476372
20
3.2
20
71
16
53
23
21
16
38
1.93
52479826--52479872
20
2.3
20
81
0
58
29
34
12
23
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52482456--52482561
48
2.2
47
85
9
135
59
1
24
14
1.45
52484231--52484277
20
2.3
20
81
0
58
29
34
12
23
1.92
52487261--52487302
18
2.2
19
83
8
50
14
7
7
71
1.29
52490881--52490933
21
2.5
21
93
0
88
24
7
47
20
1.76
52491637--52491708
21
3.4
20
79
12
65
77
4
15
2
1.03
52491648--52491690
15
2.8
15
78
3
50
79
2
16
2
0.95
52491648--52491706
31
1.9
30
83
13
75
77
3
15
3
1.02
52491733--52491791
27
2.2
27
100
0
118
44
6
25
23
1.78
52491785--52491816
12
2.7
12
100
0
64
46
12
15
25
1.81
52491811--52491845
6
5.8
6
93
0
61
82
2
14
0
0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320