genome.fa.s12.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  148  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48605227--48605259	10	3.2	10	95	4	57	24	18	27	30	1.98
48608843--48608875	9	3.7	9	84	15	50	63	15	0	21	1.30
48618246--48618300	29	1.9	29	85	3	76	27	25	23	23	2.00
48618572--48618629	24	2.4	24	83	11	73	27	18	20	32	1.97
48618572--48618654	25	3.3	24	81	9	78	27	20	20	31	1.97
48619584--48619713	27	4.8	26	77	12	109	31	7	18	42	1.78
48619670--48619799	27	4.8	27	76	12	115	30	10	19	39	1.86
48619565--48619766	54	3.7	54	80	5	190	31	9	18	40	1.82
48619786--48619889	27	3.9	26	85	6	102	39	11	22	26	1.88
48619798--48619889	27	3.4	27	90	0	139	40	9	23	26	1.86
48624416--48624523	57	1.9	57	84	3	146	25	18	21	35	1.96
48625544--48625712	74	2.3	74	87	0	257	29	22	22	25	1.99
48632211--48632430	46	4.7	46	82	3	246	28	20	29	21	1.98
48632211--48632427	94	2.3	92	83	4	258	29	20	28	21	1.98
48635296--48635322	10	2.7	10	100	0	54	33	48	0	18	1.49
48635398--48635452	26	2.2	24	87	6	74	41	25	20	12	1.87
48635457--48635619	32	5.2	31	88	3	209	38	22	17	21	1.93
48636046--48636134	27	3.3	27	85	3	108	28	14	16	40	1.88
48636060--48636170	27	4.2	26	82	5	123	27	11	22	38	1.89
48636063--48636169	54	2.0	54	83	7	137	28	12	20	39	1.88
48638269--48638327	14	4.1	14	71	2	55	38	38	0	22	1.54
48638337--48638397	14	4.3	13	76	15	59	45	26	0	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48638337--48638405	22	3.2	21	82	13	79	46	24	0	28	1.53
48638313--48638397	28	3.0	28	85	3	107	44	29	1	24	1.61
48638344--48638397	7	7.6	7	78	12	56	46	25	0	27	1.53
48638726--48639086	116	3.1	115	79	5	374	29	16	19	34	1.94
48638761--48639173	115	3.6	115	77	5	277	29	17	17	35	1.93
48639316--48639451	70	1.9	71	89	3	211	20	35	4	39	1.73
48639521--48639564	19	2.4	19	88	3	63	6	40	9	43	1.63
48640568--48640650	42	2.0	42	97	0	157	32	14	8	44	1.75
48642265--48642437	9	19.9	9	71	15	64	48	16	0	35	1.46
48642225--48642416	43	4.5	43	83	7	255	50	14	0	34	1.47
48642286--48642416	34	3.5	34	79	18	145	49	14	0	35	1.44
48642206--48642330	52	2.4	52	93	0	214	49	15	1	33	1.54
48642317--48642491	54	3.5	52	85	9	233	48	17	0	34	1.47
48647558--48647751	96	2.0	96	91	0	316	12	34	18	35	1.88
48649056--48649086	15	2.1	15	93	0	53	29	29	0	41	1.56
48650699--48650891	57	3.4	56	83	2	226	26	18	19	35	1.94
48653478--48653698	40	5.6	40	82	2	232	25	23	26	25	2.00
48659759--48659823	28	2.3	28	91	0	103	35	26	7	30	1.84
48659929--48660018	28	3.2	27	84	7	110	20	23	23	33	1.97
48659939--48660029	27	3.2	28	82	4	94	21	25	19	32	1.97
48659929--48660043	55	2.1	56	82	8	137	19	23	21	35	1.96
48687631--48687712	29	2.8	29	96	0	146	35	15	25	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48687668--48687826	71	2.2	71	98	0	309	33	16	23	25	1.95
48701489--48701538	26	2.0	24	88	7	73	64	6	0	30	1.18
48701517--48701564	21	2.3	20	82	7	51	70	8	0	20	1.12
48701538--48701602	35	1.9	33	81	12	78	63	9	0	27	1.25
48701614--48701646	15	2.1	16	88	11	50	69	0	0	30	0.88
48703566--48703591	6	4.3	6	100	0	52	15	69	15	0	1.20
48705326--48705372	19	2.4	20	89	10	71	23	27	0	48	1.51
48705273--48705435	74	2.3	72	87	8	226	25	33	0	41	1.60
48712733--48712956	35	6.4	35	89	0	243	34	24	13	28	1.93
48712733--48713001	70	3.9	70	84	1	283	33	23	13	28	1.93
48712738--48713001	105	2.5	104	80	2	269	32	23	14	29	1.94
48712738--48712990	35	7.3	34	87	1	222	32	24	14	28	1.94
48712772--48712994	35	6.4	35	88	0	223	31	24	15	28	1.95
48716261--48716367	47	2.2	48	81	6	128	33	28	14	23	1.94
48718222--48718486	35	7.6	35	90	0	307	31	24	15	28	1.95
48718511--48718537	12	2.2	12	100	0	54	25	33	7	33	1.84
48723147--48723178	15	2.1	15	94	0	55	34	37	6	21	1.79
48735748--48735777	15	2.0	15	100	0	60	26	13	6	53	1.64
48746041--48746167	45	2.8	45	90	0	191	26	29	22	22	1.99
48748772--48749033	39	6.7	39	91	1	391	19	22	28	29	1.98
48772920--48773085	84	2.0	83	96	1	305	26	24	24	24	2.00
48784363--48784550	80	2.3	80	83	7	256	23	17	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48784363--48784587	40	5.7	40	85	2	222	23	19	26	30	1.98
48784359--48784587	80	2.9	80	78	8	252	22	19	27	30	1.98
48790133--48790191	30	1.9	31	86	3	84	35	13	23	27	1.92
48792583--48792640	15	3.9	15	78	17	75	62	13	13	10	1.55
48806093--48806268	46	3.8	45	78	10	194	21	21	28	28	1.98
48806374--48806417	21	2.1	21	100	0	88	40	9	36	13	1.76
48809641--48809722	42	2.0	42	82	0	101	30	21	14	32	1.94
48809694--48809802	47	2.3	47	82	3	121	30	24	13	31	1.94
48809814--48809846	7	4.7	7	100	0	66	12	27	15	45	1.81
48809845--48810084	31	7.7	31	92	0	363	26	26	19	28	1.99
48810062--48810238	50	3.5	50	88	2	257	26	21	16	35	1.94
48821737--48821788	27	1.9	27	96	0	95	38	23	5	32	1.78
48821740--48821800	27	2.3	27	85	5	79	44	19	8	27	1.79
48822369--48822422	23	2.3	23	93	0	90	20	16	20	42	1.89
48835254--48835301	23	2.1	23	92	0	78	20	22	16	39	1.92
48836359--48836397	16	2.4	16	100	0	78	30	5	17	46	1.70
48844402--48844881	245	2.0	245	100	0	960	30	12	20	36	1.90
48853620--48853692	23	3.2	22	74	12	76	28	21	26	23	1.99
48855240--48855329	29	3.1	29	91	1	137	30	26	12	31	1.92
48860618--48860881	40	6.6	39	86	4	275	25	21	26	26	1.99
48860673--48860881	40	5.3	40	91	2	291	25	20	27	27	1.99
48868588--48868812	40	5.7	40	87	5	296	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48868588--48868845	119	2.2	119	81	8	285	25	21	27	25	2.00
48871913--48872037	56	2.2	56	84	2	162	36	20	15	28	1.93
48876299--48876330	14	2.4	13	90	10	55	62	12	6	18	1.50
48879172--48879348	40	4.4	40	85	4	243	25	27	23	23	2.00
48887360--48887536	40	4.4	40	85	4	234	25	27	22	23	2.00
48910333--48910509	40	4.4	40	85	4	234	25	27	22	23	2.00
48926421--48926464	16	2.8	15	80	10	52	75	0	6	18	1.02
48927456--48927616	24	6.6	24	73	6	135	23	11	31	33	1.91
48927464--48927603	74	1.9	75	83	7	187	23	10	31	34	1.89
48941836--48941893	28	2.1	28	83	0	71	43	12	15	29	1.83
48943403--48943537	23	5.7	23	74	11	107	31	16	23	28	1.96
48943414--48943537	46	2.6	47	75	13	121	33	15	24	27	1.95
48954583--48954687	27	3.9	26	80	12	113	19	22	20	37	1.95
48954582--48954693	54	2.1	54	84	3	145	17	23	21	37	1.94
48960840--48961062	40	5.6	40	86	3	236	24	21	27	26	1.99
48960915--48961097	79	2.3	80	82	1	226	25	20	27	25	1.99
48963307--48963888	47	12.4	47	93	0	939	27	31	8	32	1.87
48963711--48963833	22	5.3	22	62	18	61	26	30	9	32	1.89
48970042--48970153	27	4.2	26	83	7	134	16	22	23	38	1.93
48970042--48970153	54	2.1	54	89	3	172	16	22	23	38	1.93
48971267--48971437	43	4.0	43	78	6	193	25	16	26	31	1.96
48981488--48981656	43	4.0	42	73	7	135	24	17	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48981488--48981640	42	3.6	41	72	11	130	26	16	24	32	1.96
49016681--49016781	40	2.5	41	82	6	118	32	17	28	20	1.96
49023935--49024082	51	2.9	51	80	3	183	27	19	23	29	1.98
49030933--49030988	27	2.1	27	100	0	112	30	14	21	33	1.93
49030941--49030999	27	2.2	27	87	6	84	28	15	23	32	1.95
49035878--49036049	27	6.4	27	86	0	236	46	18	11	24	1.81
49039622--49039646	5	5.0	5	100	0	50	80	0	20	0	0.72
49041760--49041823	30	2.2	29	97	2	119	34	23	17	25	1.96
49048856--49048919	30	2.2	29	97	2	119	34	23	17	25	1.96
49052741--49052946	112	1.8	112	86	2	297	26	14	23	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320