genome.fa.s12.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  208  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69480068--69480224	79	2.0	80	82	6	194	24	27	22	25	2.00
69488134--69488314	40	4.6	40	80	9	201	24	27	22	25	2.00
69496211--69496237	7	3.9	7	100	0	54	29	0	55	14	1.40
69498038--69498087	26	2.0	25	88	11	75	56	8	10	26	1.60
69510357--69510445	40	2.2	40	88	4	126	32	15	30	21	1.94
69512462--69512637	46	3.8	45	76	10	167	22	19	28	29	1.98
69514323--69514380	27	2.1	27	87	0	80	41	18	12	27	1.86
69518100--69518154	27	2.0	27	89	0	83	38	16	16	29	1.90
69520113--69520145	17	1.9	17	88	11	50	39	12	0	48	1.40
69524882--69524956	27	2.7	28	89	6	109	77	5	5	12	1.10
69526528--69526598	20	3.4	19	74	24	63	69	1	5	23	1.18
69530218--69530246	13	2.2	13	100	0	58	17	37	31	13	1.89
69533259--69533315	25	2.3	25	87	6	89	5	42	15	36	1.70
69535156--69535297	49	2.9	50	82	1	178	28	19	21	30	1.97
69538503--69538567	15	4.4	15	76	16	64	9	12	13	64	1.49
69538499--69538567	30	2.3	31	80	14	83	8	11	17	62	1.53
69540706--69540930	49	4.5	49	87	3	299	24	18	27	29	1.98
69540699--69540938	99	2.4	100	83	4	315	24	18	27	29	1.98
69544013--69544086	25	3.0	25	77	0	76	31	20	21	27	1.98
69547282--69547459	27	6.6	27	83	3	205	26	15	28	29	1.96
69547283--69547438	82	1.9	81	88	3	233	26	15	28	29	1.96
69547279--69547459	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69555469--69555646	27	6.6	27	83	3	205	26	15	28	29	1.96
69555470--69555625	82	1.9	81	88	3	233	26	15	28	29	1.96
69555466--69555646	82	2.2	81	83	2	229	27	15	27	29	1.96
69558544--69558887	111	3.1	114	78	9	463	41	8	7	43	1.62
69558831--69558969	72	1.9	74	88	5	212	35	12	6	46	1.67
69559353--69559395	18	2.4	17	85	14	52	65	2	2	30	1.18
69565968--69566009	21	2.1	21	87	12	63	47	4	2	45	1.36
69567330--69567361	14	2.3	14	94	0	55	31	9	31	28	1.88
69574012--69574081	23	3.0	23	69	12	63	31	15	25	27	1.96
69576850--69576887	19	2.0	19	89	0	58	34	50	2	13	1.55
69577841--69577870	15	2.1	14	93	6	51	10	0	43	46	1.37
69579177--69579242	28	2.4	28	86	0	87	27	25	22	24	2.00
69579271--69579327	21	2.7	21	94	0	96	40	49	5	5	1.48
69579368--69579433	28	2.4	26	73	16	71	40	24	19	15	1.90
69585241--69585321	34	2.4	33	87	6	126	23	24	24	27	2.00
69586599--69586623	10	2.5	10	100	0	50	68	0	32	0	0.90
69597030--69597075	24	1.9	24	82	8	58	21	8	2	67	1.29
69602652--69602727	34	2.2	34	90	0	116	21	26	26	26	1.99
69611276--69611409	40	3.3	40	81	0	142	27	20	22	29	1.98
69611420--69611479	28	2.1	28	90	0	93	26	10	30	33	1.89
69631216--69631255	20	2.0	20	85	9	55	20	27	0	52	1.46
69631214--69631248	16	2.2	16	90	5	54	20	25	0	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69642284--69642335	26	2.0	26	84	0	68	51	13	7	26	1.67
69647353--69647499	43	3.4	44	83	3	183	27	12	25	34	1.93
69657768--69657917	43	3.5	43	80	3	169	32	22	16	29	1.96
69661110--69661140	12	2.6	12	94	0	53	38	0	41	19	1.51
69662251--69662563	27	11.6	27	82	4	308	41	22	17	18	1.90
69662251--69662579	54	6.1	54	83	4	349	41	21	17	18	1.90
69662251--69662660	81	5.1	80	78	6	362	41	20	17	20	1.90
69662272--69662661	27	14.4	27	83	4	304	41	20	17	20	1.90
69663972--69664058	43	2.0	43	86	0	120	34	25	9	31	1.87
69665229--69665260	16	2.0	16	100	0	64	31	50	6	12	1.65
69668408--69668573	43	3.9	43	84	2	201	33	24	13	27	1.94
69669775--69669923	43	3.5	42	79	7	149	32	16	18	32	1.93
69682989--69683039	6	8.3	6	75	12	50	21	0	1	76	0.88
69683009--69683037	14	2.1	14	100	0	58	27	0	0	72	0.85
69683854--69683916	27	2.4	27	89	2	101	34	19	22	23	1.96
69688806--69688951	46	3.2	46	71	16	115	29	28	19	21	1.98
69711237--69711337	43	2.3	43	75	16	109	32	28	13	24	1.94
69713410--69713483	35	2.1	35	85	5	96	18	10	10	59	1.59
69730729--69730783	27	2.0	27	100	0	110	18	25	32	23	1.97
69749526--69749576	16	3.2	16	80	5	59	47	13	23	15	1.82
69749792--69749911	29	4.2	29	84	1	152	25	14	30	30	1.94
69754045--69754079	16	2.2	16	89	0	52	48	17	22	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69754288--69754411	29	4.3	29	83	3	162	25	13	30	30	1.94
69757801--69758023	39	5.7	40	85	9	257	25	27	21	25	2.00
69757801--69758023	79	2.8	79	82	9	258	25	27	21	25	2.00
69761821--69762084	47	5.6	47	93	1	422	32	7	31	28	1.86
69763510--69763612	43	2.4	43	100	0	206	22	15	35	26	1.94
69763594--69763667	29	2.6	29	86	4	96	27	16	31	25	1.96
69763980--69764202	80	2.8	80	82	4	236	24	22	27	24	2.00
69763980--69764215	40	5.9	40	81	4	210	24	22	27	25	2.00
69767319--69767535	47	4.6	47	91	1	335	32	8	30	28	1.86
69768960--69769062	43	2.4	43	100	0	206	22	15	35	26	1.94
69769044--69769117	29	2.6	29	89	4	105	25	16	32	25	1.96
69769430--69769665	40	5.9	40	81	4	210	24	22	28	24	2.00
69769430--69769652	80	2.8	80	82	4	236	24	23	28	24	2.00
69772480--69772649	47	3.6	47	90	1	250	32	8	30	28	1.86
69795649--69795776	39	3.3	39	86	0	184	21	25	21	32	1.97
69815795--69815924	45	2.9	45	80	1	154	29	15	25	30	1.96
69818054--69818089	16	2.2	16	90	9	56	22	11	8	58	1.59
69821593--69821650	9	6.1	9	80	11	53	60	3	0	36	1.14
69821816--69821918	49	2.1	50	83	5	129	34	0	2	61	1.18
69821867--69821953	39	2.3	37	78	11	95	35	0	4	59	1.18
69822017--69822169	82	1.9	82	83	2	200	36	12	9	41	1.75
69825531--69825592	22	2.8	22	81	13	74	17	1	3	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69826465--69826512	21	2.3	21	78	7	53	18	35	22	22	1.96
69831467--69831640	27	6.6	27	77	9	133	28	29	15	26	1.96
69839470--69839647	27	6.6	27	80	7	155	28	29	15	26	1.96
69839495--69839646	54	2.8	53	84	6	189	26	30	16	26	1.97
69856866--69856964	51	1.9	51	93	0	171	42	5	13	39	1.66
69864291--69864434	68	2.1	68	79	14	163	39	4	6	50	1.47
69866570--69866639	35	2.0	35	100	0	140	40	11	25	22	1.88
69869270--69869454	79	2.3	82	83	7	229	24	27	22	24	2.00
69869251--69869454	40	5.1	40	81	8	229	24	27	22	25	2.00
69875299--69875486	40	4.7	40	87	3	281	25	27	22	25	2.00
69876031--69876241	40	5.3	40	84	7	270	25	26	22	26	2.00
69875095--69877393	755	3.0	755	95	3	3985	31	22	16	29	1.95
69876809--69877036	40	5.7	40	89	3	343	25	26	21	25	2.00
69876776--69877032	80	3.2	80	87	3	342	25	26	22	25	2.00
69880282--69880410	46	2.8	46	92	2	206	19	20	29	31	1.97
69882606--69882663	28	2.1	28	100	0	116	18	36	17	27	1.94
69887757--69887881	47	2.7	47	86	5	164	30	24	16	29	1.96
69898643--69898991	50	6.9	50	78	2	349	31	26	16	25	1.97
69898699--69898979	101	2.8	101	87	1	393	32	26	16	24	1.96
69898652--69898991	151	2.3	150	82	2	385	31	27	16	24	1.96
69906189--69906226	16	2.4	16	86	8	51	65	5	15	13	1.43
69906206--69906266	11	5.3	11	90	6	86	68	8	6	16	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69906966--69907006	15	2.7	15	96	0	73	39	24	24	12	1.89
69910269--69910306	20	2.0	19	90	10	60	31	10	21	36	1.87
69910349--69910415	26	2.6	25	90	4	107	25	26	22	25	2.00
69910348--69910432	25	3.4	25	80	15	79	27	23	23	25	2.00
69910639--69910722	31	2.7	31	96	1	152	32	17	26	23	1.97
69913024--69913093	35	2.0	35	100	0	140	31	5	25	37	1.80
69922728--69922894	46	3.6	47	71	13	148	31	26	19	22	1.97
69922826--69922911	46	1.9	45	83	4	111	30	27	18	23	1.98
69923335--69923378	14	2.9	16	76	13	56	27	20	6	45	1.76
69924302--69924329	14	2.0	14	100	0	56	42	28	0	28	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320