genome.fa.s12.2.7.7.80.10.50.1000.293.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  293  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93651395--93651568	50	3.5	50	73	9	131	39	18	9	32	1.83
93651389--93651581	100	1.9	100	82	4	237	39	18	10	31	1.85
93651741--93651817	41	1.9	41	84	12	106	33	28	18	19	1.95
93652709--93652762	23	2.4	22	78	9	56	42	5	0	51	1.25
93658931--93659104	50	3.5	50	73	9	131	39	18	9	32	1.83
93658925--93659117	100	1.9	100	82	4	237	39	18	10	31	1.85
93660257--93660310	23	2.4	22	78	9	56	42	5	0	51	1.25
93664260--93664476	46	4.7	46	87	5	287	39	15	23	21	1.91
93664221--93664476	138	1.9	130	85	7	343	38	15	24	21	1.92
93665875--93665947	34	2.2	33	87	2	101	27	20	20	31	1.97
93668081--93668106	13	2.0	13	100	0	52	38	15	0	46	1.46
93670752--93670777	13	2.0	13	100	0	52	46	7	7	38	1.61
93672814--93672897	43	1.9	41	88	11	123	53	3	2	40	1.31
93680803--93681074	141	1.9	140	87	3	395	32	20	20	25	1.97
93683566--93684035	46	10.7	42	82	14	339	27	21	15	35	1.93
93683640--93684035	46	8.6	46	84	11	490	27	21	15	35	1.93
93683683--93683796	52	2.2	53	93	1	194	27	22	13	36	1.91
93683640--93684028	98	4.1	98	84	10	556	27	21	14	35	1.93
93683739--93683904	83	2.0	82	91	1	269	26	21	15	36	1.93
93683607--93684002	181	2.2	181	98	0	765	27	20	15	36	1.93
93683864--93684028	52	3.3	51	84	12	232	27	22	13	35	1.92
93687161--93687364	49	4.0	50	82	10	232	32	29	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93687245--93687363	58	2.0	59	96	1	222	31	30	14	23	1.94
93687254--93687344	27	3.2	28	65	17	69	27	30	16	25	1.97
93688597--93689032	46	9.9	42	81	15	339	27	21	15	35	1.93
93688671--93689054	46	8.3	46	84	11	489	27	21	14	36	1.93
93688714--93688827	52	2.2	53	93	1	194	27	22	13	36	1.91
93688671--93689074	98	4.3	98	85	9	586	27	21	14	35	1.93
93688770--93688935	83	2.0	82	91	1	269	26	21	15	36	1.93
93688638--93689033	181	2.2	181	98	0	765	27	20	15	36	1.93
93688895--93689074	52	3.6	52	85	9	264	27	22	13	35	1.93
93692140--93692168	14	2.1	14	93	6	51	34	0	10	55	1.34
93692581--93692620	21	1.9	21	89	0	62	30	20	47	2	1.63
93692869--93692995	40	3.1	40	80	5	130	40	21	19	18	1.92
93692869--93692977	41	2.7	40	85	4	128	39	20	20	20	1.93
93693160--93693239	21	3.9	21	71	21	78	28	1	26	43	1.62
93698313--93698378	31	2.1	31	88	0	96	19	10	19	50	1.77
93700245--93700270	12	2.2	12	100	0	52	7	15	30	46	1.74
93700339--93700704	112	3.2	113	90	1	556	24	22	27	25	2.00
93700636--93700745	41	2.7	40	87	2	139	20	23	29	27	1.99
93700522--93700821	155	1.9	155	89	4	471	23	22	27	27	2.00
93701066--93701107	15	2.9	14	82	6	57	21	0	40	38	1.53
93702105--93702146	20	2.0	21	86	4	59	69	2	0	28	1.01
93701949--93702400	145	3.1	146	94	2	793	44	14	16	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93702295--93702506	105	2.0	106	96	0	390	34	17	23	24	1.96
93702318--93702530	105	2.0	102	83	7	259	40	15	20	23	1.91
93702465--93702700	118	2.0	119	94	1	422	44	11	16	26	1.82
93702761--93702798	20	1.9	20	88	0	58	71	2	0	26	1.00
93702583--93702929	144	2.4	144	91	4	564	44	14	15	25	1.85
93705002--93705050	25	1.9	26	84	12	66	26	2	6	65	1.27
93706689--93706886	86	2.3	86	84	3	274	27	17	24	30	1.97
93706705--93706873	43	3.9	43	89	1	259	27	15	25	31	1.96
93710182--93710222	14	3.1	14	86	6	59	12	0	7	80	0.90
93716485--93716534	26	1.9	26	95	0	91	46	18	22	14	1.84
93718578--93718819	41	5.9	41	76	6	179	35	21	17	25	1.95
93719102--93719185	21	3.9	22	76	9	66	48	26	0	25	1.51
93719103--93719196	7	13.1	7	71	4	53	47	29	0	22	1.51
93719339--93719418	38	2.2	37	86	8	110	26	3	25	45	1.70
93719473--93719518	24	1.9	24	86	0	65	15	2	36	45	1.58
93723587--93723628	20	2.1	20	86	8	59	14	26	38	21	1.91
93724162--93724197	13	2.7	13	91	4	54	52	19	0	27	1.46
93725798--93725828	3	10.0	3	93	6	53	64	0	3	32	1.09
93726797--93726825	14	2.1	14	93	6	51	34	0	10	55	1.34
93731720--93731787	16	4.2	16	92	0	109	29	0	32	38	1.58
93731917--93732226	157	2.0	157	93	0	530	44	3	4	47	1.40
93731980--93732229	76	3.1	81	63	24	186	46	4	3	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93731963--93732284	157	2.0	155	81	5	349	46	4	4	44	1.44
93733106--93733135	13	2.3	13	100	0	60	60	13	6	20	1.55
93738805--93738987	46	4.0	46	95	0	294	22	23	14	39	1.90
93743062--93743113	23	2.2	25	82	6	63	9	11	1	76	1.09
93743143--93743192	12	3.8	13	78	14	50	72	4	0	24	1.02
93744029--93744063	16	2.3	15	90	5	52	31	2	2	62	1.24
93745630--93745665	12	3.0	12	87	0	54	25	27	5	41	1.77
93745638--93745669	16	1.9	17	93	6	57	25	28	6	40	1.79
93753046--93753160	44	2.6	44	85	2	149	35	13	22	27	1.92
93753046--93753179	46	3.0	45	82	4	153	35	14	23	26	1.93
93756143--93756318	71	2.5	70	87	3	230	28	14	22	34	1.93
93756390--93756423	13	2.5	13	90	4	50	20	11	8	58	1.59
93756290--93756550	140	1.9	141	91	2	436	26	16	20	36	1.94
93756476--93756615	75	1.9	75	86	7	203	28	18	22	30	1.98
93756531--93756706	90	1.9	91	82	5	223	23	20	19	35	1.96
93756720--93756947	83	2.7	82	81	11	250	31	15	18	33	1.93
93756462--93756841	169	2.3	159	81	8	435	27	18	19	34	1.95
93756462--93757211	162	4.5	163	73	15	479	28	17	19	34	1.95
93757109--93757147	15	2.6	15	88	8	53	28	12	5	53	1.60
93756944--93757543	91	6.7	89	76	10	419	28	15	18	37	1.92
93756949--93757488	184	3.0	179	77	9	497	27	15	18	37	1.92
93758424--93758481	29	1.9	31	82	6	75	10	10	1	77	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93758969--93759014	7	6.6	7	87	12	51	34	0	8	56	1.30
93759401--93759435	16	2.3	15	90	5	52	31	2	2	62	1.24
93761436--93761474	21	1.9	20	85	15	53	61	2	2	33	1.23
93767226--93767272	25	2.0	25	83	8	62	27	14	4	53	1.60
93767533--93767752	46	5.0	46	82	9	251	21	24	15	39	1.92
93767666--93767741	38	2.0	38	100	0	152	23	26	18	31	1.97
93775167--93775195	3	9.7	3	100	0	58	68	0	31	0	0.89
93781113--93781180	34	2.0	34	100	0	136	35	20	2	41	1.68
93816924--93817112	47	3.9	47	83	6	193	24	16	29	30	1.96
93817455--93817498	24	1.9	22	81	9	52	45	6	22	25	1.77
93819424--93819452	13	2.3	13	94	5	51	48	0	0	51	1.00
93820131--93820176	12	3.8	13	80	11	53	76	0	23	0	0.79
93820119--93820172	19	2.8	19	76	17	67	75	0	24	0	0.80
93820125--93820176	24	2.1	25	89	10	81	75	0	25	0	0.81
93822695--93822857	39	4.2	39	95	0	290	12	26	23	37	1.90
93823138--93823168	15	2.1	15	100	0	62	54	6	19	19	1.65
93824792--93824825	17	2.0	17	94	0	59	26	0	5	67	1.13
93826422--93826596	90	1.9	89	82	6	219	28	26	18	26	1.98
93826643--93826780	48	2.9	48	88	0	213	25	29	19	25	1.98
93832630--93832795	38	4.3	38	80	8	147	20	20	26	32	1.97
93836952--93837022	33	2.2	33	81	0	79	23	14	40	21	1.89
93839661--93839726	29	2.2	30	86	2	89	46	12	3	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93842531--93842564	2	17.0	2	100	0	68	50	0	50	0	1.00
93844244--93844316	31	2.4	31	80	8	80	47	13	2	35	1.57
93844930--93844997	30	2.3	30	97	2	129	50	8	2	38	1.49
93847945--93848134	47	3.9	47	81	5	175	24	17	28	28	1.98
93854971--93855035	21	3.1	21	80	6	62	35	4	4	55	1.41
93855230--93855277	24	1.9	26	84	16	66	35	0	6	58	1.23
93867627--93867845	76	2.9	74	85	4	278	27	16	22	32	1.96
93867783--93867988	88	2.4	88	90	2	317	30	14	20	35	1.92
93867971--93868006	18	2.0	18	100	0	72	33	5	27	33	1.80
93868032--93868067	14	2.7	13	83	8	54	30	13	8	47	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320