genome.fa.s12.2.7.7.80.10.50.1000.296.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  296  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94345842--94345872	16	1.9	16	100	0	62	6	0	51	41	1.27
94347666--94347786	39	3.1	39	91	0	206	20	23	30	25	1.98
94350618--94350659	20	2.1	20	100	0	84	30	14	14	40	1.85
94351263--94351332	34	2.0	35	88	2	106	38	17	10	34	1.83
94352303--94352329	14	1.9	14	100	0	54	18	7	0	74	1.05
94357225--94357283	31	1.9	30	82	6	73	35	0	3	61	1.13
94361079--94361186	55	2.0	54	83	1	135	50	12	7	29	1.66
94363837--94363861	6	4.2	6	100	0	50	16	36	0	48	1.46
94365099--94365138	21	1.9	21	85	10	55	40	5	10	45	1.60
94366518--94366567	26	1.9	26	91	0	82	22	2	28	48	1.62
94369050--94369157	38	2.8	38	84	2	137	27	26	23	22	1.99
94371574--94371923	3	115.0	3	66	18	75	27	8	3	60	1.41
94371879--94371923	22	2.1	21	91	4	72	31	6	0	62	1.21
94372086--94372339	125	2.0	127	83	4	318	33	12	15	38	1.85
94373264--94373307	17	2.5	17	85	7	52	34	4	2	59	1.30
94375345--94375391	18	2.5	20	79	13	62	51	4	0	44	1.21
94381719--94381852	69	1.9	70	86	4	191	44	9	11	34	1.73
94382586--94382635	22	2.2	22	92	3	82	36	22	18	24	1.95
94385964--94386707	156	4.8	156	89	2	987	38	12	9	39	1.75
94385952--94386754	77	10.2	79	84	3	874	37	12	9	39	1.76
94386884--94386932	18	2.6	18	81	12	55	34	2	0	63	1.06
94388559--94388596	20	1.9	20	89	10	60	60	7	0	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94391987--94392041	27	2.0	28	85	3	76	61	1	0	36	1.06
94391994--94392046	23	2.2	25	86	13	83	62	0	0	37	0.96
94392003--94392046	23	1.9	23	100	0	88	59	0	0	40	0.98
94401479--94401545	34	1.9	35	87	3	100	44	11	8	34	1.73
94402975--94403078	18	5.5	19	75	13	81	26	0	9	62	1.32
94402975--94403056	9	8.9	9	78	5	74	26	1	8	63	1.31
94403167--94403210	18	2.4	18	80	0	61	40	0	2	56	1.11
94403371--94403397	14	1.9	14	100	0	54	51	7	7	33	1.58
94403437--94403461	10	2.5	10	100	0	50	92	0	8	0	0.40
94404458--94404490	15	2.1	17	88	11	52	48	6	0	45	1.27
94410851--94410883	13	2.5	13	100	0	66	63	6	24	6	1.40
94412987--94413027	21	2.0	21	90	0	64	19	29	21	29	1.98
94417184--94417296	59	1.9	58	94	1	199	54	1	3	39	1.28
94422442--94422661	40	5.6	40	87	3	313	28	25	21	24	1.99
94424061--94424088	13	2.2	13	100	0	56	57	14	0	28	1.38
94427225--94427274	24	2.0	26	88	7	77	54	0	10	36	1.34
94427381--94427479	25	4.1	24	71	16	80	57	2	9	31	1.41
94427429--94427509	26	3.1	26	78	16	87	60	2	8	28	1.39
94427437--94427477	11	3.2	13	76	16	50	63	0	9	26	1.25
94428062--94428113	25	2.0	25	85	3	68	63	5	3	26	1.34
94430253--94430298	24	1.9	24	100	0	92	71	2	4	21	1.14
94433825--94433869	23	2.0	23	100	0	90	33	4	17	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94435659--94435702	22	2.0	21	82	8	52	50	2	2	45	1.27
94438204--94438270	6	11.2	6	96	0	125	34	0	14	50	1.44
94439019--94439054	13	2.8	14	84	16	51	27	25	0	47	1.52
94439006--94439046	18	2.2	19	87	12	59	29	24	0	46	1.53
94440924--94440954	4	7.5	4	92	7	53	0	29	0	70	0.87
94441527--94441557	6	5.2	6	100	0	62	35	0	16	48	1.46
94447829--94447897	18	3.8	18	77	5	68	34	14	15	34	1.89
94449152--94449185	17	2.1	15	89	10	50	0	35	0	64	0.94
94449157--94449205	25	2.0	25	84	8	64	0	30	2	67	1.02
94453846--94453899	23	2.3	23	83	3	63	40	14	9	35	1.78
94459637--94459695	25	2.4	25	97	0	109	44	22	16	16	1.87
94462647--94462686	15	2.5	17	84	8	57	60	0	5	35	1.19
94462703--94462750	24	2.0	23	84	4	60	29	20	2	47	1.61
94471837--94471868	17	1.9	16	93	6	55	53	0	15	31	1.43
94474519--94474584	21	3.2	21	73	14	66	39	0	3	57	1.14
94474814--94474847	13	2.8	12	86	4	50	47	0	0	52	1.00
94475229--94475263	7	5.1	7	96	3	63	42	0	0	57	0.99
94475883--94475929	20	2.5	19	86	6	60	40	2	17	40	1.61
94476770--94476832	19	3.3	19	70	26	51	36	25	28	9	1.87
94476741--94476839	39	2.6	37	81	9	119	36	25	26	12	1.91
94477238--94477278	21	1.9	22	85	5	57	41	14	0	43	1.45
94479620--94479664	21	2.1	21	83	0	54	22	26	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94481766--94481948	86	2.1	86	82	3	215	42	8	12	37	1.73
94482336--94482383	24	2.0	24	100	0	96	33	20	16	29	1.95
94484062--94484143	20	4.0	20	73	22	71	25	7	2	64	1.32
94501083--94501117	18	1.9	18	88	0	52	31	0	11	57	1.34
94501414--94501462	25	2.0	25	84	4	64	63	8	0	28	1.23
94501426--94501490	25	2.9	23	80	15	66	66	7	0	26	1.19
94501452--94501490	19	2.0	20	90	5	62	71	7	0	20	1.10
94502048--94502080	16	2.0	17	88	5	50	42	6	0	51	1.26
94502359--94502404	25	1.9	24	86	8	67	30	6	10	52	1.62
94502839--94503230	132	3.0	130	86	1	570	32	18	16	32	1.94
94502840--94503346	130	3.9	130	83	3	581	30	19	17	32	1.95
94502850--94503628	132	5.9	128	76	8	543	29	18	18	33	1.95
94510233--94510263	11	2.8	11	100	0	62	74	0	25	0	0.82
94512804--94512838	18	1.9	18	88	0	52	31	0	11	57	1.34
94513910--94514416	130	3.9	131	82	4	560	30	19	17	32	1.95
94514344--94514581	132	1.8	132	80	7	295	25	18	19	36	1.94
94516793--94516824	6	5.3	6	92	0	55	43	15	21	18	1.87
94521070--94521126	21	2.7	21	78	10	71	47	22	15	14	1.82
94527695--94527755	30	2.0	30	81	6	70	34	13	18	34	1.89
94528120--94528247	53	2.3	57	80	9	140	43	1	3	51	1.26
94528424--94528454	16	1.9	16	93	0	53	29	29	6	35	1.82
94528774--94528834	23	2.6	25	80	17	76	36	11	4	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94529074--94529144	3	24.3	3	79	11	76	61	4	0	33	1.15
94531389--94531418	14	2.1	14	93	0	51	46	36	0	16	1.47
94543018--94543060	18	2.4	17	81	11	50	27	2	18	51	1.59
94547073--94547150	33	2.4	32	79	16	88	51	6	1	41	1.36
94551182--94551283	49	2.1	49	100	0	204	42	19	7	30	1.80
94552424--94552516	45	2.1	44	95	2	168	34	2	2	61	1.20
94552582--94552625	24	1.9	22	86	9	61	65	2	0	31	1.05
94552572--94552644	13	5.1	14	69	19	53	64	1	1	32	1.11
94553326--94553367	20	2.1	20	86	0	57	50	0	4	45	1.23
94553609--94553648	16	2.5	16	79	0	53	47	7	15	30	1.72
94572512--94572680	86	2.0	85	85	3	232	38	20	7	33	1.81
94573040--94573245	88	2.3	88	84	4	265	35	5	18	39	1.75
94573732--94573761	13	2.4	13	94	5	53	73	3	6	16	1.18
94577822--94577853	13	2.5	13	100	0	64	78	0	6	15	0.95
94579141--94579188	15	3.3	15	82	2	62	37	2	12	47	1.53
94579823--94579863	19	2.2	19	87	12	59	46	0	24	29	1.53
94585609--94585654	19	2.4	18	82	10	56	19	23	13	43	1.86
94593872--94594130	134	1.9	134	88	0	383	31	20	21	27	1.98
94594068--94594519	88	5.1	87	66	14	271	29	21	21	27	1.99
94593979--94594539	177	3.2	177	88	2	822	29	21	22	27	1.99
94594444--94594539	44	2.2	44	84	0	120	26	21	26	26	2.00
94594834--94594892	31	2.0	31	83	6	77	27	38	15	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94604459--94604493	11	3.2	11	88	11	54	0	54	0	45	0.99
94604977--94605022	23	2.0	23	83	8	58	30	2	10	56	1.46
94605254--94605290	19	1.9	19	88	0	56	40	2	5	51	1.39
94610453--94610550	38	2.5	38	85	3	115	26	24	23	25	2.00
94610482--94610576	38	2.5	38	84	3	111	25	20	25	29	1.99
94610581--94610704	64	1.9	64	95	0	221	12	26	31	29	1.92
94610645--94610837	43	4.5	43	88	2	289	11	23	32	31	1.91
94610814--94610844	16	1.9	16	93	0	53	12	29	29	29	1.94
94611178--94611289	45	2.5	45	83	11	126	25	20	27	26	1.99
94614313--94614672	47	7.7	45	74	12	271	28	18	28	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320