genome.fa.s12.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  116  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37837133--37837212	27	3.0	26	82	7	106	38	25	7	28	1.83
37837222--37837310	27	3.3	27	91	0	142	32	22	7	37	1.83
37837331--37837404	27	2.7	27	85	6	105	40	24	6	28	1.80
37837386--37837582	27	7.3	27	84	0	241	34	18	20	26	1.96
37837361--37837580	54	4.1	53	84	4	185	34	19	19	27	1.96
37837986--37838081	31	3.1	30	79	10	106	18	14	15	51	1.77
37838050--37838101	18	2.9	19	83	13	58	21	15	11	51	1.74
37838011--37838081	6	11.7	6	82	8	81	18	15	15	50	1.78
37850611--37850761	67	2.3	67	77	14	159	32	15	31	21	1.94
37856862--37856902	19	2.2	19	100	0	82	53	14	4	26	1.61
37856872--37856913	11	4.1	11	76	17	54	50	16	2	30	1.58
37865746--37865806	28	2.2	28	96	0	113	21	29	21	27	1.98
37867831--37867934	53	2.0	53	88	0	154	35	19	25	19	1.95
37880595--37880638	19	2.3	19	88	7	63	31	15	4	47	1.66
37899408--37899653	40	6.2	40	93	1	370	23	21	26	28	1.99
37912018--37912045	13	2.2	13	100	0	56	28	21	0	50	1.49
37914424--37914741	47	6.7	46	72	16	210	24	31	18	26	1.97
37916636--37916772	57	2.4	58	86	3	188	34	18	18	29	1.94
37917655--37917679	9	2.8	9	100	0	50	40	0	0	60	0.97
37923838--37923896	30	2.0	30	82	0	73	30	15	27	27	1.96
37927060--37927189	66	1.9	69	83	10	169	34	15	29	20	1.93
37930301--37930342	22	1.9	22	85	0	57	45	26	0	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37931068--37931105	14	2.9	13	81	11	51	18	13	10	57	1.63
37936932--37936968	11	3.5	11	88	3	58	27	0	0	72	0.84
37939387--37939424	14	2.9	13	81	11	51	18	13	10	57	1.63
37940677--37940797	44	2.8	43	76	6	120	32	26	19	22	1.97
37941554--37941580	12	2.2	12	100	0	54	62	0	0	37	0.95
37943779--37943824	24	1.9	23	83	16	58	39	13	10	36	1.79
37946970--37947244	48	5.7	48	90	2	401	23	17	32	27	1.96
37951445--37951474	10	3.0	10	95	0	51	63	10	0	26	1.26
37958814--37958907	40	2.3	40	80	7	102	24	13	28	32	1.94
37963231--37963272	14	2.9	15	82	7	50	52	7	0	40	1.29
37963229--37963277	15	3.3	15	80	5	64	51	8	0	40	1.32
37964474--37964523	25	2.0	25	100	0	100	36	16	8	40	1.77
37967556--37967747	55	3.5	54	80	9	212	34	17	25	22	1.96
37967562--37967759	108	1.8	110	85	4	285	34	16	25	23	1.95
37969132--37969354	79	2.8	79	84	9	269	24	27	22	26	2.00
37969132--37969354	39	5.7	40	86	8	266	24	27	22	26	2.00
37970432--37970458	14	1.9	14	100	0	54	0	7	3	88	0.61
37977100--37977323	79	2.8	78	80	10	249	24	26	23	25	2.00
37977100--37977323	39	5.7	40	83	8	239	24	26	23	25	2.00
37978399--37978423	13	1.9	13	100	0	50	0	8	4	88	0.64
37980005--37980113	57	1.9	58	86	5	159	24	14	34	25	1.94
37980001--37980147	29	5.2	29	79	4	149	26	13	32	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37980013--37980147	57	2.4	57	82	7	150	25	14	34	25	1.94
37985420--37985820	48	8.1	48	88	6	570	36	5	25	32	1.80
37985427--37985820	152	2.6	148	89	6	623	36	5	25	32	1.80
37985427--37985817	100	3.9	101	90	5	618	36	5	25	32	1.80
37985967--37986111	37	3.9	37	95	0	254	23	18	31	26	1.97
38000123--38000417	47	6.3	47	91	0	457	33	8	29	28	1.86
38000196--38000272	25	3.2	25	68	17	81	33	3	29	32	1.76
38007698--38007865	40	4.2	40	80	4	151	25	27	23	23	2.00
38007721--38007865	40	3.6	40	82	8	170	24	26	24	25	2.00
38011238--38011631	47	8.4	47	91	2	612	32	8	31	28	1.87
38015921--38016088	40	4.2	40	80	9	139	27	27	20	24	1.99
38015958--38016088	40	3.3	39	86	4	181	29	27	19	23	1.99
38015956--38016139	80	2.3	79	82	10	214	28	27	20	23	1.99
38021296--38021333	20	1.9	19	85	15	51	26	23	10	39	1.87
38022251--38022276	13	2.0	13	100	0	52	38	15	15	30	1.88
38030500--38030658	43	3.7	43	75	5	135	31	25	18	23	1.98
38030508--38030614	42	2.5	43	77	10	112	30	25	18	25	1.98
38033647--38033837	27	7.0	27	83	1	204	23	21	11	43	1.85
38033647--38033837	54	3.5	54	83	2	231	23	21	11	43	1.85
38033669--38033820	81	1.9	81	88	0	232	22	21	9	46	1.81
38033647--38033837	81	2.3	81	81	2	231	23	21	11	43	1.85
38033830--38033892	32	2.0	32	93	0	108	31	11	6	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38036101--38036286	40	4.7	40	86	4	243	20	22	25	32	1.98
38036101--38036273	79	2.2	78	86	4	231	21	21	24	32	1.98
38038540--38038573	14	2.4	14	95	0	59	35	2	11	50	1.54
38040375--38040460	43	2.0	43	83	0	109	27	11	31	29	1.92
38052934--38053104	46	3.7	45	78	10	150	21	32	20	25	1.98
38054812--38054923	23	4.8	23	75	11	86	29	20	21	28	1.98
38059853--38059939	30	2.9	30	86	3	95	26	26	25	21	2.00
38060840--38060886	24	2.0	24	91	0	76	29	19	25	25	1.98
38060873--38060953	22	3.6	22	77	8	76	27	18	22	32	1.97
38064013--38064086	29	2.6	29	89	4	105	25	16	32	25	1.96
38064439--38064473	17	2.1	17	100	0	70	45	11	17	25	1.81
38076752--38076809	28	2.1	28	100	0	116	39	15	17	27	1.90
38090859--38091003	43	3.4	42	78	5	148	33	20	15	31	1.93
38104296--38104610	96	3.3	96	92	0	517	33	7	29	29	1.84
38104296--38104610	47	6.6	49	89	5	457	33	7	29	29	1.84
38104411--38104486	22	3.3	22	66	10	62	32	9	27	30	1.88
38111139--38111671	47	11.2	47	89	2	805	31	8	30	29	1.87
38111139--38111671	96	5.6	96	93	1	831	31	8	30	29	1.87
38111789--38111867	37	2.1	37	88	0	113	25	18	30	25	1.98
38113732--38114006	43	6.4	43	97	0	505	22	16	34	25	1.95
38114055--38114292	40	5.9	40	92	2	379	27	20	28	23	1.99
38114058--38114335	120	2.3	120	86	1	360	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38114055--38114329	80	3.4	80	89	1	374	26	20	28	24	1.99
38114055--38114335	40	7.0	40	89	2	320	27	20	28	24	1.99
38117903--38118431	47	11.1	47	90	2	815	32	8	30	29	1.87
38117903--38118431	96	5.5	96	93	1	841	32	8	30	29	1.87
38118549--38118627	37	2.1	37	88	0	113	25	18	30	25	1.98
38120493--38120562	32	2.2	32	100	0	140	35	7	12	44	1.70
38120749--38120840	39	2.3	39	84	3	121	27	23	27	21	1.99
38120703--38120891	40	4.7	40	78	8	154	24	23	27	24	2.00
38120823--38120977	40	3.9	40	83	0	184	24	21	28	25	1.99
38124251--38124495	49	5.1	49	90	3	381	31	8	31	28	1.88
38124254--38124495	96	2.5	96	93	1	394	30	9	31	28	1.88
38124614--38124692	37	2.1	37	90	0	122	24	18	31	25	1.98
38133788--38133853	34	1.9	34	90	0	105	25	18	22	33	1.97
38136565--38136751	93	2.0	93	90	0	293	25	21	21	31	1.98
38148238--38148308	25	2.8	25	79	10	83	28	25	19	26	1.99
38148529--38148611	30	2.7	31	88	3	125	31	19	26	22	1.98
38148529--38148606	31	2.6	30	91	2	120	30	20	26	21	1.98
38152835--38153090	47	5.5	45	72	17	170	29	19	28	23	1.98
38152835--38153043	46	4.5	46	76	9	169	28	19	28	23	1.98
38154068--38154123	29	2.0	28	83	16	71	16	21	42	19	1.89
38155795--38155966	93	1.8	93	94	0	308	20	19	30	29	1.97
38155807--38155973	46	3.6	46	77	13	189	20	18	31	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38163379--38163548	46	3.7	45	76	13	193	19	19	30	30	1.96
38163370--38163541	93	1.8	93	97	0	326	20	20	30	29	1.97
38170821--38171029	46	4.5	46	77	9	196	27	19	29	23	1.98
38172755--38172932	27	6.6	27	79	3	133	29	28	15	26	1.96
38172781--38172931	82	1.9	81	87	4	223	29	27	15	27	1.96
38180854--38181031	27	6.6	27	84	3	205	29	28	15	26	1.96
38180875--38181030	82	1.9	81	88	3	233	29	28	15	26	1.96
38181510--38181535	12	2.2	12	100	0	52	42	0	7	50	1.31
38183361--38183398	19	2.0	19	89	0	58	26	15	10	47	1.78
38186922--38186998	38	2.0	38	100	0	154	42	12	10	33	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320