genome.fa.s12.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  205  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68407223--68407358	43	3.2	43	83	5	132	33	22	15	29	1.94
68407953--68407984	13	2.5	13	100	0	64	6	31	31	31	1.82
68413006--68413081	37	2.1	37	97	0	143	42	18	6	32	1.76
68421798--68421822	13	1.9	13	100	0	50	12	40	32	16	1.84
68426627--68426804	27	6.6	27	77	6	137	30	28	15	25	1.96
68426627--68426804	54	3.3	54	78	7	164	30	28	15	25	1.96
68434633--68434810	27	6.6	27	77	6	137	30	28	15	25	1.96
68434633--68434810	54	3.3	54	78	7	164	30	28	15	25	1.96
68457577--68457660	42	2.0	42	100	0	168	28	21	16	33	1.95
68460728--68460852	46	2.7	46	88	0	187	30	18	28	23	1.97
68461223--68461321	45	2.2	45	83	1	128	38	19	18	24	1.93
68461493--68461595	44	2.3	43	81	4	125	28	19	27	25	1.99
68461516--68461826	143	2.2	143	85	1	408	30	18	23	28	1.97
68461559--68461866	143	2.2	143	83	1	393	30	18	21	28	1.97
68463641--68463694	28	1.9	28	88	0	81	20	7	1	70	1.21
68476967--68477000	16	2.1	17	88	5	52	38	5	20	35	1.77
68478057--68478330	151	1.8	151	81	1	343	24	24	27	24	2.00
68490878--68491049	40	4.3	40	86	2	213	24	21	28	25	1.99
68490878--68491049	79	2.2	79	82	3	211	24	21	28	25	1.99
68490905--68491082	79	2.2	80	81	2	198	24	21	28	24	1.99
68498823--68498994	40	4.3	40	86	2	213	24	21	28	25	1.99
68498823--68498994	79	2.2	79	82	3	211	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68498850--68499027	79	2.2	80	81	2	198	24	21	28	24	1.99
68508467--68508643	45	4.0	43	80	11	182	24	15	27	32	1.95
68509457--68509706	6	41.0	6	72	16	176	48	14	17	20	1.81
68509464--68509702	85	2.8	85	90	1	370	48	14	17	20	1.81
68509523--68509703	25	6.8	25	76	11	125	47	14	18	19	1.83
68509843--68509900	27	2.1	27	84	6	73	36	27	20	15	1.93
68510203--68510285	27	3.1	26	86	5	103	37	22	20	19	1.94
68510486--68510671	54	3.5	53	83	5	223	26	19	17	35	1.95
68510485--68510678	27	7.2	26	83	4	192	27	19	18	35	1.94
68512551--68512701	40	3.8	41	85	4	168	21	27	25	25	2.00
68520405--68520521	40	2.9	41	87	3	175	23	28	24	23	2.00
68520412--68520553	40	3.6	40	85	2	162	23	28	24	23	2.00
68534295--68534570	43	6.5	43	84	2	324	24	16	28	30	1.96
68535355--68535591	118	2.0	118	94	0	420	30	8	21	38	1.83
68537090--68537142	25	2.2	25	86	10	74	30	18	16	33	1.94
68537097--68537167	26	2.8	25	85	6	81	26	21	22	29	1.99
68537300--68537348	25	2.0	25	87	0	71	28	16	20	34	1.94
68543916--68543998	29	2.8	29	84	12	107	28	25	18	27	1.98
68544216--68544286	26	2.9	24	83	8	97	23	21	26	28	1.99
68544334--68544380	20	2.3	20	92	0	76	34	19	10	36	1.86
68544417--68544464	25	1.9	25	82	0	60	29	18	20	31	1.97
68546795--68546839	18	2.5	18	79	13	56	77	15	2	4	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68548108--68548161	28	1.9	28	88	0	81	20	7	1	70	1.21
68559447--68559622	46	3.8	46	79	12	216	20	21	29	28	1.98
68559444--68559615	93	1.8	93	96	0	317	20	21	29	27	1.98
68571573--68571612	19	2.0	20	90	4	64	42	17	0	40	1.49
68574525--68574582	27	2.1	27	87	0	80	25	13	20	39	1.90
68579068--68579146	39	2.0	39	100	0	158	32	12	17	36	1.88
68579360--68579418	30	2.0	30	86	6	84	38	5	28	27	1.78
68579927--68580063	51	3.0	44	75	16	134	22	16	27	32	1.96
68583777--68583840	15	4.3	15	88	7	94	12	10	17	59	1.61
68590933--68590979	23	2.0	23	95	0	85	23	29	8	38	1.84
68592978--68593194	46	4.6	48	78	7	176	24	29	19	26	1.99
68594568--68594692	47	2.7	48	80	6	132	32	20	24	22	1.97
68603972--68604062	45	2.0	45	93	0	155	25	12	24	38	1.90
68611625--68611676	27	2.0	26	82	14	63	21	19	19	40	1.92
68611715--68611840	24	5.3	23	74	11	101	19	23	20	35	1.96
68611714--68611856	72	2.0	73	83	9	186	20	23	20	34	1.96
68621564--68621687	41	3.0	39	76	15	108	16	20	26	35	1.95
68621578--68621692	41	2.8	41	78	2	124	17	21	26	34	1.95
68629798--68629848	22	2.2	25	89	10	81	62	3	5	27	1.36
68629830--68629869	13	2.6	16	81	18	50	67	2	7	22	1.28
68629924--68629950	13	2.1	13	100	0	54	22	37	14	25	1.93
68636079--68636113	18	1.9	18	88	11	54	31	5	8	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68638075--68638137	29	2.1	31	82	11	78	36	17	12	33	1.88
68639008--68639066	29	2.0	29	100	0	118	44	10	10	35	1.72
68645745--68645935	40	4.8	40	86	6	246	23	29	24	23	1.99
68655355--68656082	47	15.6	47	89	5	1084	26	32	10	30	1.89
68655966--68655990	9	2.8	9	100	0	50	32	32	0	36	1.58
68655920--68656082	55	3.1	56	77	18	215	27	31	8	31	1.87
68658741--68658836	39	2.4	41	83	8	119	19	30	27	22	1.98
68673248--68673278	16	1.9	16	100	0	62	45	19	19	16	1.86
68673861--68673899	7	5.6	7	90	9	62	12	2	0	84	0.72
68673854--68673890	13	2.9	13	96	4	67	13	0	0	86	0.57
68673854--68673899	20	2.3	20	85	10	67	13	2	0	84	0.71
68674488--68674530	22	2.0	22	86	9	61	46	25	0	27	1.53
68674548--68674574	14	1.9	14	100	0	54	44	33	0	22	1.53
68674720--68674762	21	2.0	21	82	8	52	30	48	4	16	1.66
68674732--68674789	14	4.1	14	71	6	55	36	43	0	20	1.52
68674732--68674762	7	4.4	7	91	0	53	32	51	0	16	1.44
68674973--68675057	40	2.1	40	82	4	100	65	5	4	23	1.34
68675245--68675491	81	3.0	80	85	2	316	21	21	20	36	1.96
68675245--68675491	41	6.1	40	87	2	316	21	21	20	36	1.96
68679040--68679170	35	3.6	35	79	13	131	32	12	23	32	1.91
68683409--68683528	39	3.1	39	98	0	231	24	31	24	20	1.98
68692950--68693009	29	2.1	29	100	0	120	13	21	13	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68694333--68694421	33	2.8	33	81	8	96	43	7	11	37	1.70
68695387--68695435	24	2.0	24	88	0	71	42	18	10	28	1.83
68702493--68702560	33	2.1	33	83	5	84	25	23	13	38	1.91
68714810--68714855	20	2.4	19	82	7	65	30	30	15	23	1.95
68719731--68719911	72	2.5	73	88	3	251	30	25	18	25	1.98
68724782--68724953	93	1.8	93	92	0	290	28	30	20	20	1.98
68724775--68724950	46	3.8	46	76	15	182	29	30	20	19	1.97
68732291--68732462	93	1.8	93	92	0	290	28	30	20	20	1.98
68732284--68732459	46	3.8	46	76	15	182	29	30	20	19	1.97
68735296--68735343	19	2.6	19	86	3	62	12	27	31	29	1.93
68735308--68735351	19	2.2	20	92	4	72	15	25	34	25	1.95
68736921--68737088	72	2.3	72	85	4	205	30	29	17	22	1.97
68738633--68738740	26	4.2	26	93	0	189	32	7	24	36	1.83
68744526--68744629	55	1.9	55	100	0	208	33	4	11	50	1.60
68745602--68745635	17	1.9	18	88	5	52	17	0	41	41	1.50
68745599--68745641	18	2.4	18	80	7	52	18	0	44	37	1.50
68748108--68748301	40	4.9	40	85	6	252	23	28	23	24	1.99
68748108--68748300	79	2.4	79	86	5	264	23	29	23	23	1.99
68756188--68756378	40	4.8	40	86	6	246	23	29	24	23	1.99
68762476--68762585	41	2.7	41	89	0	175	31	21	24	21	1.98
68762571--68762875	41	7.7	41	81	7	319	26	20	24	28	1.99
68762617--68762679	32	2.0	32	96	0	117	23	25	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68762576--68762795	72	2.9	73	78	8	199	26	19	25	28	1.99
68762649--68762875	83	2.8	81	83	4	278	26	20	23	29	1.99
68763662--68763704	21	2.0	21	86	8	61	25	2	27	44	1.66
68764115--68764170	7	7.6	7	91	4	76	67	3	1	26	1.16
68764089--68764176	8	10.9	8	79	9	65	62	4	2	30	1.27
68764115--68764173	22	2.6	22	86	7	84	64	3	1	30	1.20
68770203--68770297	42	2.3	42	83	3	111	25	18	26	29	1.98
68771222--68771398	46	3.8	48	78	13	156	28	19	31	20	1.97
68771226--68771439	47	4.6	46	73	17	138	29	19	28	21	1.98
68775989--68776175	49	3.8	49	80	4	234	28	25	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320