genome.fa.s12.2.7.7.80.10.50.1000.303.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  303  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96462757--96462843	25	3.5	25	82	0	93	21	20	19	37	1.94
96462818--96462859	22	1.9	22	85	0	57	21	26	16	35	1.94
96464745--96464811	21	3.2	21	71	0	71	44	16	23	14	1.85
96464719--96464857	42	3.3	42	80	0	134	45	15	20	17	1.86
96464747--96464871	42	3.0	42	80	0	115	44	16	22	16	1.87
96468106--96468165	4	15.0	4	96	0	93	45	25	5	25	1.73
96476594--96476654	31	2.0	31	93	6	106	57	3	6	32	1.41
96476666--96476693	5	5.6	5	100	0	56	0	17	0	82	0.68
96477227--96477254	12	2.3	12	100	0	56	71	0	0	28	0.86
96477307--96477349	22	2.0	21	82	13	52	60	2	2	34	1.22
96477317--96477436	17	6.8	17	72	18	61	65	0	4	30	1.17
96477289--96477384	25	3.7	24	73	21	77	64	2	3	30	1.20
96477479--96477526	8	6.0	8	78	7	53	72	6	0	20	1.05
96480334--96480372	18	2.2	17	95	4	69	56	0	43	0	0.99
96483887--96483980	33	2.9	34	85	7	115	39	11	18	30	1.86
96483924--96484056	65	2.0	66	81	4	153	34	13	21	30	1.92
96483918--96484052	33	4.1	32	76	5	110	34	11	20	32	1.89
96486184--96486243	29	2.1	29	87	3	86	58	11	3	26	1.49
96487961--96487990	15	2.0	15	93	0	51	36	40	10	13	1.78
96488205--96488384	89	2.0	89	91	0	288	38	17	13	29	1.89
96488493--96488553	12	5.1	12	85	0	59	60	11	4	22	1.50
96488502--96488547	6	7.7	6	92	0	74	65	13	2	19	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96488981--96489020	21	1.9	21	94	0	71	27	30	17	25	1.97
96490235--96490282	20	2.4	20	89	6	71	56	6	0	37	1.25
96490235--96490289	19	2.9	18	86	10	58	52	5	0	41	1.24
96490448--96490480	16	2.0	17	88	5	50	33	3	12	51	1.54
96498198--96498329	65	2.0	65	100	0	264	53	4	19	22	1.64
96502193--96502241	23	2.1	23	96	0	89	48	10	12	28	1.73
96508833--96508948	19	5.8	19	76	17	103	56	4	0	38	1.25
96508930--96508983	26	2.2	25	86	6	74	50	7	0	42	1.30
96518653--96518777	63	1.9	66	85	7	177	39	4	12	44	1.60
96538035--96538074	21	1.9	21	94	0	71	47	12	15	25	1.80
96538036--96538082	21	2.2	21	88	3	67	51	12	12	23	1.74
96544598--96544709	19	5.8	19	76	15	106	56	4	0	38	1.26
96544598--96544698	39	2.7	36	79	11	105	56	3	0	38	1.25
96544692--96544743	25	2.2	24	86	6	70	51	7	0	40	1.30
96554397--96554521	63	1.9	66	85	7	177	39	4	12	44	1.60
96563829--96563857	6	4.8	6	100	0	58	34	17	13	34	1.89
96575201--96575248	23	2.1	23	100	0	96	47	16	14	20	1.82
96578923--96579099	50	3.5	50	92	0	291	35	16	23	24	1.95
96579075--96579254	31	5.8	31	92	0	279	27	20	26	25	1.99
96579272--96579436	47	3.7	46	84	6	169	28	15	26	29	1.96
96579270--96579437	88	1.9	89	82	8	214	28	15	26	29	1.96
96579366--96579463	42	2.3	42	92	3	162	30	14	27	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96585979--96586013	17	2.1	17	89	10	54	60	0	11	28	1.32
96590931--96591000	24	2.9	24	91	0	113	32	30	12	24	1.93
96603756--96603848	46	2.0	46	100	0	186	33	8	23	34	1.85
96611342--96611384	22	2.0	22	90	0	68	34	2	16	46	1.60
96615072--96615114	22	2.0	22	90	0	68	34	2	16	46	1.60
96622503--96622625	61	2.0	61	100	0	246	27	13	22	36	1.91
96623360--96623384	5	5.0	5	100	0	50	20	60	0	20	1.37
96624065--96624122	28	2.1	28	96	0	107	55	10	12	22	1.66
96631444--96631499	22	2.7	20	78	10	76	53	8	3	33	1.49
96633585--96633630	23	2.0	23	83	8	58	50	8	6	34	1.59
96633938--96634010	29	2.7	26	81	12	78	58	5	4	31	1.39
96633955--96634017	25	2.6	24	78	16	67	60	4	4	30	1.38
96634190--96634248	22	2.6	23	74	10	59	55	3	6	33	1.43
96634328--96634372	19	2.2	21	84	7	58	62	4	6	26	1.39
96635090--96635131	17	2.4	17	92	4	66	9	2	2	85	0.77
96635093--96635131	8	4.6	8	87	9	51	7	2	2	87	0.73
96635090--96635124	9	4.0	9	85	7	54	8	0	2	88	0.61
96636215--96636559	88	3.9	88	80	8	371	36	18	17	27	1.94
96636457--96636485	14	2.1	14	100	0	58	65	6	13	13	1.45
96636241--96636724	176	2.8	176	78	12	472	34	19	17	28	1.94
96636465--96636870	81	5.2	74	72	15	223	33	21	19	25	1.97
96636384--96636855	165	3.0	161	85	7	608	32	22	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96636636--96636855	81	2.8	78	84	6	313	31	24	19	25	1.98
96648929--96648974	23	2.0	23	83	8	58	50	8	6	34	1.59
96649282--96649354	29	2.7	26	77	12	69	57	6	4	31	1.44
96650467--96650518	1	52.0	1	78	0	50	3	1	5	88	0.68
96650467--96650518	25	2.2	24	90	10	81	3	1	5	88	0.68
96650468--96650538	22	3.2	22	78	13	65	9	1	8	80	0.97
96650470--96650526	29	2.0	29	82	6	71	5	1	10	82	0.90
96664389--96664526	68	2.0	68	91	0	222	28	31	18	22	1.97
96682242--96682283	12	3.4	12	86	3	57	76	7	0	16	1.00
96687431--96687459	11	2.6	11	100	0	58	65	20	0	13	1.26
96692599--96692669	31	2.4	29	86	9	90	64	1	0	33	1.02
96692611--96692666	15	3.8	15	72	9	53	58	0	0	41	0.98
96717821--96717906	46	1.9	45	88	4	129	30	24	12	32	1.92
96724945--96725070	47	2.7	47	100	0	252	22	20	29	27	1.98
96727753--96727859	43	2.4	45	85	4	137	28	23	14	33	1.93
96740708--96740815	44	2.4	44	87	3	144	29	23	13	33	1.93
96747873--96747998	47	2.7	47	100	0	252	22	20	29	27	1.98
96750845--96750947	44	2.3	45	84	3	127	30	21	13	34	1.92
96750867--96750952	46	1.9	44	90	4	136	29	24	13	32	1.94
96752953--96752996	21	2.1	21	100	0	88	25	13	22	38	1.91
96753184--96753286	46	2.2	48	84	6	131	35	12	24	27	1.91
96762861--96762899	21	1.9	21	84	5	53	66	0	7	25	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96785082--96785154	37	2.0	37	86	10	105	47	4	0	47	1.21
96785145--96785192	15	2.9	17	75	12	55	31	0	2	66	1.03
96788748--96788792	20	2.2	20	84	7	56	48	2	4	44	1.35
96799722--96799933	51	4.2	51	91	0	343	32	22	12	33	1.91
96799719--96799922	102	2.0	102	98	0	390	32	22	12	32	1.91
96811206--96811316	47	2.4	47	83	6	145	36	23	15	25	1.94
96812079--96812111	4	8.2	4	100	0	66	0	24	0	75	0.80
96812131--96812163	16	2.1	16	94	0	57	3	18	0	78	0.87
96816971--96817192	46	4.8	46	78	9	229	31	28	18	20	1.97
96818602--96818721	48	2.5	48	86	2	163	25	22	15	36	1.93
96823564--96823782	43	5.1	43	93	1	361	30	32	25	11	1.91
96826667--96826723	30	1.9	29	89	3	87	54	17	17	10	1.70
96827326--96827370	23	2.0	23	100	0	90	31	15	17	35	1.92
96829729--96829939	46	4.6	46	75	11	162	31	29	17	20	1.96
96837295--96837357	24	2.6	24	75	9	65	38	22	19	20	1.94
96844647--96844683	12	3.0	13	84	11	51	29	40	18	10	1.85
96868778--96868903	63	2.0	63	100	0	252	28	17	17	36	1.93
96875754--96875787	17	2.0	17	94	0	59	44	8	0	47	1.34
96894017--96894043	13	2.1	13	100	0	54	29	14	22	33	1.94
96897748--96897782	18	2.0	17	88	5	52	45	0	0	54	0.99
96897657--96898039	120	3.2	120	99	0	757	43	2	4	48	1.37
96897868--96897902	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96897988--96898022	18	2.0	17	88	5	52	45	0	0	54	0.99
96898258--96898325	16	4.2	16	96	0	127	38	35	0	26	1.57
96898656--96898729	36	2.1	36	100	0	148	39	18	20	21	1.93
96902143--96902184	22	1.9	22	85	0	57	50	0	0	50	1.00
96907407--96907941	181	3.0	180	97	1	1011	32	18	14	35	1.91
96911802--96911886	39	2.2	38	79	6	91	36	7	7	49	1.57
96913262--96913302	21	2.0	21	100	0	82	53	0	4	41	1.22
96916957--96916994	20	1.9	20	89	10	60	50	0	2	47	1.15
96917172--96917207	13	2.6	14	82	8	56	52	2	0	44	1.15
96920424--96920463	16	2.5	16	83	0	53	45	0	2	52	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320