Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  300  of  320  ( 38372 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95411670--95411893
98
2.3
98
94
0
394
34
14
23
28
1.93
95411855--95412001
37
4.0
37
92
1
235
36
15
22
25
1.93
95413254--95413421
58
3.0
58
85
10
228
22
13
31
33
1.92
95413314--95413456
49
2.9
49
89
2
207
23
14
30
32
1.94
95416642--95416798
46
3.3
46
86
10
149
35
14
22
28
1.92
95416590--95416798
52
4.1
51
85
9
284
34
13
22
28
1.93
95416576--95416799
98
2.3
98
94
0
394
34
14
23
28
1.93
95416761--95416907
37
4.0
37
92
1
235
36
15
22
25
1.93
95419986--95420010
13
1.9
13
100
0
50
40
8
8
44
1.63
95425668--95425806
71
2.0
70
98
1
269
23
10
14
51
1.72
95425836--95425868
16
2.0
17
94
5
59
51
6
6
36
1.51
95426889--95426971
42
2.0
41
81
6
96
16
26
31
25
1.97
95428768--95428847
5
15.8
5
69
21
51
2
18
3
75
1.07
95429016--95429045
3
10.3
3
92
7
53
70
0
0
30
0.88
95429009--95429045
14
2.7
14
91
4
58
70
0
0
29
0.88
95429016--95429050
17
2.0
18
94
5
63
68
0
2
28
1.04
95429016--95429045
11
2.6
12
89
10
53
70
0
0
30
0.88
95435373--95435403
15
2.1
15
100
0
62
64
0
29
6
1.18
95435512--95435544
14
2.4
14
94
0
57
15
6
57
21
1.59
95446447--95446487
21
2.0
20
90
4
64
14
4
0
80
0.87
95446513--95446560
18
2.7
17
75
9
51
27
4
2
66
1.21
95446547--95446631
22
3.8
22
73
16
77
43
0
2
54
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95446635--95446718
38
2.2
40
80
8
93
34
1
4
59
1.26
95447178--95447221
21
2.1
21
83
8
54
13
2
4
79
0.98
95447256--95447299
21
2.1
21
84
16
56
36
2
0
61
1.09
95450429--95450551
30
4.1
30
91
0
192
24
21
26
27
1.99
95453926--95453981
26
2.2
26
80
6
60
14
10
5
69
1.34
95454005--95454047
14
3.4
13
78
15
54
39
0
2
58
1.11
95454684--95454716
9
3.8
9
84
8
50
78
0
3
18
0.87
95454680--95454725
17
2.9
16
84
9
58
78
0
4
17
0.91
95454765--95454835
37
1.9
36
88
2
106
50
4
1
43
1.30
95454876--95454933
22
2.7
21
79
10
62
55
3
0
41
1.17
95454853--95454934
22
3.7
22
72
20
55
54
2
1
41
1.21
95454931--95454982
18
2.9
18
80
5
61
67
0
3
28
1.08
95454936--95455010
38
2.0
36
85
10
98
70
1
5
22
1.15
95454957--95455037
18
4.5
17
73
14
58
74
2
6
17
1.14
95455027--95455064
16
2.4
16
91
8
60
81
0
5
13
0.85
95455026--95455065
17
2.4
17
87
4
64
82
0
5
12
0.82
95455969--95456014
22
2.2
20
84
7
56
17
6
8
67
1.39
95464176--95464208
5
6.6
5
100
0
66
60
18
21
0
1.36
95466909--95466946
6
6.3
6
100
0
76
15
15
36
31
1.90
95469619--95469705
16
5.1
17
75
21
83
47
11
3
37
1.57
95470516--95470589
35
2.1
34
82
4
94
40
6
10
41
1.66
95470530--95470600
35
2.0
35
94
0
124
39
7
8
45
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95471420--95471482
17
3.6
17
71
12
56
33
4
0
61
1.17
95472595--95472634
19
2.0
21
85
9
57
15
12
0
72
1.12
95473453--95473479
4
6.8
4
100
0
54
48
25
0
25
1.52
95474423--95474557
69
2.0
69
93
0
234
29
17
9
42
1.81
95475596--95475629
18
1.9
17
88
5
50
2
26
0
70
1.01
95491361--95491395
18
2.0
17
88
5
52
54
0
0
45
0.99
95491280--95491554
147
1.9
149
95
1
500
46
3
2
47
1.33
95491508--95491542
18
2.0
17
88
5
52
54
0
0
45
0.99
95491528--95491706
55
3.1
54
64
22
128
49
7
2
41
1.43
95491628--95491662
18
2.0
17
88
5
52
60
0
0
40
0.97
95491738--95491769
16
1.9
17
93
6
57
46
0
0
53
1.00
95491491--95491783
120
2.4
120
92
2
482
50
5
2
42
1.36
95494440--95494474
14
2.4
14
90
4
52
62
0
28
8
1.24
95494453--95494494
17
2.3
18
80
19
52
66
0
26
7
1.17
95509712--95509775
32
2.0
33
84
9
87
26
17
23
32
1.96
95512869--95512951
36
2.3
36
80
0
85
20
19
36
24
1.95
95512869--95512955
18
4.8
18
64
5
50
19
20
34
25
1.96
95524133--95524174
22
1.9
22
85
0
57
35
7
2
54
1.41
95525496--95525525
3
10.0
3
100
0
60
33
0
33
33
1.58
95533882--95533912
16
1.9
16
100
0
62
41
6
6
45
1.55
95536660--95536992
167
2.0
167
98
0
639
34
5
18
41
1.74
95538184--95538281
32
3.1
30
79
7
106
39
15
15
29
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95540082--95540120
18
2.2
18
86
4
53
35
28
0
35
1.58
95542031--95542064
15
2.3
15
100
0
68
44
0
0
55
0.99
95542312--95542372
19
3.1
19
68
23
54
40
4
3
50
1.40
95548832--95548883
19
2.8
18
80
19
54
46
1
0
51
1.12
95548845--95548874
15
2.0
15
93
0
51
43
0
0
56
0.99
95550000--95550028
14
2.1
14
100
0
58
27
0
0
72
0.85
95564091--95564115
11
2.3
11
100
0
50
36
8
16
40
1.77
95565338--95565368
2
15.5
2
100
0
62
0
51
0
48
1.00
95578210--95578408
52
3.9
52
82
5
239
24
16
29
29
1.97
95585143--95585247
53
2.0
52
86
1
147
39
7
10
42
1.68
95606392--95606479
46
1.9
46
88
0
122
28
29
21
20
1.98
95609545--95609958
209
2.0
209
99
0
810
44
11
20
23
1.83
95612112--95612192
40
2.0
39
81
9
92
50
3
2
43
1.33
95613023--95613065
16
2.5
18
77
14
54
20
0
2
76
0.89
95613079--95613181
10
10.3
10
65
12
50
30
3
2
63
1.27
95619692--95619720
14
2.0
15
93
6
51
10
13
0
75
1.04
95626264--95626318
24
2.2
26
81
12
71
45
0
1
52
1.11
95626456--95626550
45
2.1
45
88
1
138
32
27
5
34
1.79
95626531--95626582
16
3.2
16
94
0
86
34
36
0
28
1.58
95626607--95626644
19
2.0
20
84
5
51
60
0
7
31
1.25
95630009--95630061
25
2.1
25
82
6
63
50
1
0
47
1.12
95630303--95630343
20
2.0
20
85
0
55
60
2
7
29
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95635654--95635764
55
2.0
55
98
0
213
24
18
8
49
1.74
95637416--95637451
13
2.6
14
86
8
56
30
16
41
11
1.83
95641121--95641157
17
2.2
17
86
13
51
51
0
0
48
1.00
95649426--95649471
22
2.1
22
100
0
92
41
13
0
45
1.43
95650286--95650332
15
3.1
15
84
12
60
0
29
0
70
0.88
95660466--95660491
2
13.0
2
100
0
52
0
50
0
50
1.00
95664072--95664098
4
6.8
4
100
0
54
77
0
0
22
0.76
95669153--95669211
25
2.3
24
83
13
66
54
0
6
38
1.27
95669213--95669255
22
2.0
22
81
9
52
65
2
6
25
1.30
95671427--95671631
44
4.6
44
72
6
126
26
22
20
30
1.98
95676062--95676227
53
3.1
53
89
6
230
27
15
27
30
1.96
95680787--95680836
3
16.7
3
91
0
73
64
0
4
32
1.12
95681712--95681775
26
2.4
27
97
2
121
17
29
0
53
1.44
95682411--95682506
35
2.7
35
91
0
156
25
11
47
15
1.79
95682931--95682984
25
2.2
25
86
6
74
12
11
18
57
1.64
95687663--95687725
32
2.0
32
84
6
83
41
6
7
44
1.59
95694673--95694809
51
2.7
51
77
0
166
40
14
6
38
1.72
95697685--95697821
51
2.7
51
77
0
166
40
14
6
38
1.72
95699707--95699750
21
2.1
21
100
0
88
45
4
0
50
1.22
95704237--95704298
21
3.0
21
92
0
97
37
4
46
11
1.61
95708080--95708137
30
1.9
30
89
0
89
41
3
24
31
1.71
95708349--95708380
13
2.5
13
94
0
55
31
0
12
56
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95708475--95708716
50
4.7
50
84
4
288
26
23
29
20
1.99
95708479--95708724
100
2.4
104
86
6
349
25
23
28
21
1.99
95714067--95714146
30
2.7
30
100
0
160
18
28
17
35
1.94
95719224--95719256
15
2.2
15
89
10
50
27
0
0
72
0.85
95719260--95719284
12
2.1
12
100
0
50
48
0
0
52
1.00
95720778--95720882
40
2.7
40
86
1
158
8
63
2
24
1.36
95724957--95724996
9
4.3
9
83
3
53
35
0
2
62
1.09
95744245--95744283
20
2.0
20
85
10
53
66
7
23
2
1.30
95749818--95749874
18
3.2
18
78
9
64
47
0
3
49
1.18
95750937--95750964
6
4.7
6
100
0
56
14
32
17
35
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320