genome.fa.s12.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  140  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45793045--45793233	13	15.8	12	65	20	51	33	3	4	59	1.33
45793192--45793307	48	2.4	47	80	12	130	29	6	6	58	1.46
45793216--45793321	22	4.6	23	69	19	60	30	5	5	58	1.44
45793863--45793891	15	1.9	15	100	0	58	34	0	10	55	1.34
45793836--45793907	21	3.6	19	77	7	63	30	2	9	56	1.46
45805551--45805630	41	1.9	42	87	2	117	52	15	20	12	1.74
45806492--45806526	14	2.5	14	95	0	61	25	11	0	62	1.28
45806433--45807165	88	8.5	86	77	13	530	28	17	17	36	1.93
45806433--45807259	173	4.8	168	75	14	572	28	17	17	36	1.93
45806433--45807263	81	9.7	87	75	12	575	28	17	17	36	1.93
45808389--45808461	2	39.5	2	72	24	54	41	2	1	54	1.23
45808386--45808462	18	4.6	16	76	20	77	40	2	1	55	1.22
45808476--45808556	13	6.8	12	71	18	53	34	3	2	59	1.29
45808479--45808536	24	2.3	25	91	5	91	34	3	3	58	1.32
45808386--45808508	16	8.3	15	68	23	73	36	1	4	57	1.27
45808479--45808544	24	2.6	26	81	18	86	34	4	3	57	1.34
45808504--45808572	36	1.9	35	82	11	86	33	7	2	56	1.42
45808540--45808646	48	2.2	48	85	8	139	31	5	6	56	1.48
45809212--45809240	15	1.9	15	100	0	58	34	0	10	55	1.34
45809185--45809256	21	3.6	19	77	7	63	30	2	9	56	1.46
45813552--45813686	22	6.2	22	70	9	98	25	13	20	40	1.89
45815781--45815831	20	2.4	22	83	6	70	33	1	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45815781--45815846	23	2.9	24	78	17	70	33	4	0	62	1.16
45817376--45817405	6	5.0	6	100	0	60	83	0	0	16	0.65
45837090--45837154	32	2.0	32	90	0	103	36	21	6	35	1.79
45844415--45844450	13	2.8	13	86	0	54	33	8	19	38	1.82
45844718--45844760	21	2.1	20	86	4	59	51	2	2	44	1.27
45844741--45844774	12	2.8	12	86	4	50	50	0	2	47	1.16
45851515--45851727	106	2.0	106	100	0	426	32	8	15	42	1.78
45855858--45855904	23	2.0	23	95	0	85	25	29	34	10	1.90
45864152--45864531	48	7.9	48	80	2	388	26	26	19	27	1.99
45864153--45864532	96	3.9	96	88	4	550	26	26	19	27	1.99
45864152--45864531	144	2.6	144	81	4	449	26	26	19	27	1.99
45870962--45871139	27	6.6	27	77	6	137	30	28	15	25	1.96
45870962--45871139	54	3.3	54	78	7	164	30	28	15	25	1.96
45884820--45884886	32	2.2	28	84	10	80	62	5	1	29	1.28
45884840--45884889	14	3.4	14	75	25	50	64	4	0	32	1.12
45890079--45890124	9	5.3	9	78	19	53	41	8	13	36	1.75
45892129--45892192	33	1.9	33	87	6	94	39	14	15	31	1.87
45898751--45898790	18	2.2	18	86	8	55	15	30	0	55	1.41
45909830--45909869	21	1.9	21	89	0	62	55	5	12	27	1.58
45916030--45916072	22	1.9	23	85	4	61	23	2	51	23	1.60
45926731--45926838	26	4.2	26	95	0	198	32	7	25	35	1.84
45928323--45928375	26	2.0	26	82	7	63	39	22	15	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45935120--45935507	49	8.1	49	87	4	567	31	9	31	28	1.89
45935120--45935507	96	4.0	96	96	0	632	31	9	31	28	1.89
45938001--45938108	26	4.2	26	95	0	198	32	7	25	35	1.84
45941200--45941437	47	5.1	47	92	0	350	32	10	29	27	1.90
45941244--45941368	25	5.2	24	64	30	72	32	11	28	28	1.91
45941315--45941390	22	3.3	22	65	28	59	31	13	30	25	1.93
45941200--45941483	141	2.0	141	84	4	367	32	10	29	27	1.90
45941200--45941483	94	3.0	94	86	2	311	32	10	29	27	1.90
45943700--45943752	26	2.0	26	82	7	63	39	22	15	22	1.91
45945910--45945957	10	4.7	10	89	2	69	35	18	10	35	1.85
45945892--45945957	20	3.2	21	87	4	73	34	19	10	34	1.86
45950719--45950943	40	5.7	39	84	3	245	25	26	24	24	2.00
45950719--45950903	79	2.3	80	87	0	255	25	25	24	23	2.00
45955279--45955401	45	2.7	46	73	8	126	41	13	21	22	1.89
45958159--45958216	8	7.1	8	76	3	53	58	0	1	39	1.08
45958286--45958310	12	2.1	12	100	0	50	76	0	24	0	0.80
45960096--45960140	20	2.2	20	96	0	81	17	42	31	8	1.80
45960432--45960485	27	2.0	27	85	0	72	38	14	5	40	1.70
45963786--45963848	26	2.4	26	76	10	74	39	22	17	20	1.92
45970126--45970172	24	2.0	24	83	8	60	40	2	4	53	1.32
45972318--45972562	40	6.2	40	79	7	212	32	15	20	31	1.94
45972318--45972562	80	3.1	79	78	7	253	32	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45972318--45972508	79	2.4	80	82	6	228	31	13	21	32	1.92
45972322--45972548	119	1.9	119	83	1	294	33	14	21	31	1.93
45973527--45973565	19	2.0	20	85	10	53	23	7	2	66	1.30
45976646--45976734	18	5.6	14	74	17	52	61	3	2	32	1.24
45978276--45978305	15	2.0	15	93	0	51	40	0	3	56	1.16
45990257--45990297	21	2.0	21	85	0	55	70	12	9	7	1.33
46008165--46008194	10	3.0	10	100	0	60	20	20	0	60	1.37
46015498--46015810	156	2.0	156	97	0	590	38	20	12	29	1.89
46016002--46016049	20	2.4	20	71	0	51	33	18	27	20	1.96
46027023--46027244	40	5.6	40	91	1	322	25	21	26	26	2.00
46036399--46036441	21	2.0	23	90	9	72	18	9	20	51	1.74
46043649--46043895	40	6.2	40	79	12	244	23	23	28	25	1.99
46043689--46043895	79	2.6	79	85	3	274	23	23	28	25	2.00
46045554--46045592	16	2.4	16	95	0	69	43	5	5	46	1.48
46045561--46045600	16	2.7	15	88	7	55	42	10	5	42	1.60
46054217--46054253	6	6.3	6	87	6	58	29	0	2	67	1.04
46054217--46054252	11	3.2	11	88	7	54	30	0	2	66	1.06
46054273--46054297	13	1.9	13	100	0	50	0	8	12	80	0.92
46078710--46078752	16	2.7	16	82	13	61	27	13	6	51	1.67
46078710--46078755	17	2.8	17	83	9	69	28	15	6	50	1.69
46082224--46082255	16	2.0	16	93	0	55	37	9	6	46	1.61
46083664--46083709	20	2.4	19	82	7	58	52	2	2	43	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46089276--46089317	21	2.0	21	90	0	66	19	4	23	52	1.65
46089147--46089415	138	1.9	138	96	0	493	21	12	22	43	1.86
46092146--46092209	31	2.1	31	100	0	128	28	15	17	39	1.90
46102122--46102471	18	19.1	18	71	12	194	39	13	10	36	1.79
46102214--46102337	54	2.3	54	97	0	230	41	12	9	35	1.76
46102640--46102749	45	2.4	45	86	0	148	41	19	19	20	1.90
46102634--46102772	45	2.9	48	78	11	142	40	20	20	18	1.92
46102727--46102751	12	2.1	12	100	0	50	40	20	24	16	1.91
46104493--46104555	5	12.4	5	98	1	117	60	0	0	39	0.97
46104643--46104695	21	2.5	22	78	9	65	58	3	0	37	1.16
46109097--46109392	18	16.1	18	71	8	121	37	14	10	37	1.81
46109097--46109380	36	7.7	36	72	11	171	38	14	10	36	1.81
46109189--46109392	54	3.8	54	76	7	164	37	13	11	37	1.82
46109190--46109392	72	2.8	72	80	6	225	37	13	11	37	1.81
46109190--46109392	36	5.6	36	75	8	189	37	13	11	37	1.81
46109563--46109672	45	2.4	45	90	0	175	42	19	18	20	1.89
46109557--46109700	45	3.0	49	81	11	163	40	20	19	19	1.91
46111415--46111465	7	7.6	7	76	24	56	58	0	0	41	0.98
46111423--46111473	5	9.6	5	87	12	75	60	0	0	39	0.97
46111416--46111470	12	4.8	12	86	13	89	60	0	0	40	0.97
46111418--46111474	3	20.3	3	74	25	54	61	0	0	38	0.96
46112721--46112861	43	3.3	43	83	4	187	24	31	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46112863--46112895	17	2.0	17	88	5	50	69	0	0	30	0.88
46113517--46113549	12	2.8	12	100	0	66	36	9	6	48	1.60
46117588--46117650	23	2.7	22	77	18	74	55	4	1	38	1.31
46118817--46118921	7	14.7	7	71	13	63	39	40	0	20	1.53
46118817--46118918	36	2.8	36	82	8	102	37	41	0	21	1.54
46118980--46119214	41	5.8	41	91	0	312	18	25	24	32	1.97
46119017--46119256	81	3.0	81	85	4	252	20	24	22	32	1.97
46119389--46119430	20	2.0	21	90	4	68	50	7	9	33	1.62
46123537--46123564	13	2.2	13	100	0	56	39	14	10	35	1.81
46126223--46126404	40	4.6	40	88	0	265	13	13	28	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320