genome.fa.s12.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  193  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64076633--64076972	42	8.1	42	86	1	448	24	18	23	32	1.97
64078431--64078469	20	1.9	21	84	5	53	35	10	23	30	1.88
64078958--64079051	28	3.3	28	83	2	125	24	13	32	28	1.94
64083369--64083400	16	2.0	16	93	0	55	43	15	25	15	1.86
64091000--64091495	42	11.8	42	87	0	688	23	19	24	32	1.97
64092512--64092623	52	2.2	52	90	0	179	18	20	30	30	1.97
64098172--64098346	46	3.8	45	78	7	190	28	28	21	22	1.99
64098180--64098350	93	1.8	93	92	0	288	27	28	21	22	1.99
64109760--64110124	48	7.6	48	85	1	389	24	30	19	26	1.98
64127220--64127601	48	8.0	48	70	13	245	26	27	18	26	1.98
64127221--64127602	96	4.0	97	86	2	531	26	28	18	26	1.98
64127221--64127602	144	2.7	142	72	11	355	26	28	18	26	1.98
64136623--64136907	47	6.1	47	92	0	401	33	10	29	26	1.90
64136743--64136864	22	5.3	22	63	27	65	31	13	29	25	1.93
64136881--64137017	46	3.0	46	91	0	220	34	8	31	25	1.86
64138762--64138857	29	3.3	29	85	1	122	23	11	33	31	1.90
64156580--64156758	48	3.9	47	73	8	143	25	17	25	31	1.97
64159182--64159368	42	4.4	41	73	11	144	27	19	24	28	1.98
64159133--64159326	85	2.3	85	88	0	280	27	20	23	28	1.99
64159133--64159363	85	2.7	85	82	1	230	27	19	23	28	1.99
64163186--64163322	40	3.4	40	87	0	193	11	14	27	46	1.79
64169394--64169554	24	6.6	24	69	11	94	24	13	28	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64171534--64171568	18	1.9	18	88	11	54	42	8	17	31	1.79
64175984--64176019	18	2.0	18	100	0	72	38	22	0	38	1.54
64180939--64181163	49	4.5	49	83	4	254	29	27	17	25	1.97
64180926--64181170	98	2.5	100	83	3	289	28	27	17	25	1.98
64182888--64183215	164	2.0	164	95	1	595	31	21	26	21	1.98
64189587--64189621	17	2.0	17	88	5	52	34	0	11	54	1.37
64196607--64196869	40	6.6	40	87	3	316	24	20	27	27	1.99
64196646--64196902	80	3.2	80	84	3	243	25	20	27	26	1.99
64200970--64201179	40	5.3	40	92	1	307	24	20	28	27	1.99
64200917--64201179	80	3.3	80	85	4	239	25	20	26	27	1.99
64217334--64217504	93	1.8	93	89	2	272	29	28	20	21	1.98
64217327--64217499	46	3.7	46	76	13	176	29	28	19	21	1.98
64217327--64217520	46	4.2	46	71	15	150	29	28	19	22	1.98
64230407--64230572	46	3.6	45	75	11	156	30	27	19	23	1.98
64230407--64230577	93	1.8	93	88	0	261	30	26	19	23	1.98
64230401--64230594	46	4.2	46	70	18	134	30	27	19	23	1.98
64245204--64245321	4	29.5	4	92	0	200	25	1	24	48	1.61
64257882--64258071	90	2.1	90	92	0	310	32	17	10	39	1.83
64259587--64259628	19	2.2	19	91	8	68	52	4	0	42	1.22
64260045--64260282	4	59.5	4	96	0	413	26	2	23	47	1.63
64261416--64261460	14	3.1	14	80	3	54	22	8	31	37	1.85
64272677--64272847	93	1.8	93	89	0	270	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64272670--64272842	46	3.8	45	76	13	172	29	28	19	21	1.98
64274737--64274819	42	2.0	41	81	9	96	16	34	25	22	1.95
64285005--64285143	43	3.2	43	77	9	131	29	15	22	32	1.95
64294044--64294164	43	2.9	42	79	11	147	33	24	19	23	1.97
64298555--64298704	75	2.0	75	100	0	300	30	28	13	28	1.94
64303449--64303574	39	3.2	39	87	0	171	22	22	26	29	1.99
64310976--64311200	40	5.6	40	87	6	312	24	28	23	23	1.99
64310976--64311200	83	2.8	82	88	6	327	24	28	23	23	1.99
64323591--64323653	25	2.5	24	90	7	99	22	23	31	22	1.98
64323687--64323716	16	1.9	15	93	6	51	33	13	23	30	1.93
64324457--64324520	27	2.4	27	81	5	76	21	25	17	35	1.95
64324574--64324680	27	3.9	28	70	18	80	34	7	17	40	1.78
64324702--64324827	27	4.8	27	77	6	107	35	7	23	33	1.82
64324716--64324827	54	2.1	51	81	4	125	36	8	25	29	1.85
64326930--64327096	46	3.6	46	78	10	180	28	21	28	21	1.99
64329510--64329637	42	3.0	42	75	6	123	32	25	12	30	1.92
64331430--64331601	40	4.3	40	88	2	222	25	27	21	25	1.99
64331432--64331654	40	5.6	39	83	5	216	25	27	21	25	1.99
64331430--64331654	80	2.8	79	80	7	240	25	27	21	25	1.99
64331586--64331663	40	1.9	41	82	10	97	26	28	20	24	1.99
64343181--64343405	80	2.8	80	81	6	260	24	21	28	25	1.99
64343182--64343405	40	5.6	39	82	7	229	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64343255--64343438	80	2.3	80	83	5	214	26	20	27	25	1.99
64351211--64351431	40	5.6	40	84	5	270	24	22	28	24	2.00
64351281--64351464	80	2.3	80	84	5	223	26	21	27	25	1.99
64351214--64351464	119	2.1	119	79	7	260	26	21	27	24	1.99
64353338--64353643	47	6.5	47	93	0	504	32	8	30	28	1.87
64353762--64353840	37	2.1	37	88	0	113	24	20	31	24	1.98
64355695--64356083	40	9.7	39	86	6	225	24	22	28	25	1.99
64355733--64356156	80	5.3	80	89	2	534	24	21	27	25	1.99
64355813--64356169	40	8.9	40	89	0	491	24	21	28	25	1.99
64358354--64358940	47	12.5	47	97	0	1077	32	8	29	29	1.87
64359059--64359137	37	2.1	37	90	0	122	24	18	31	25	1.98
64364255--64364292	19	2.0	20	85	15	53	39	23	0	36	1.55
64364521--64364688	46	3.6	45	77	7	185	29	28	20	22	1.98
64364522--64364692	93	1.8	93	93	0	297	29	28	20	21	1.98
64371771--64371808	19	2.0	20	85	15	53	39	23	0	36	1.55
64372037--64372158	46	2.7	46	92	0	190	29	27	22	21	1.99
64372033--64372169	46	3.0	45	85	4	150	29	27	21	21	1.98
64376533--64376798	47	5.6	48	71	12	176	28	19	29	22	1.98
64376478--64376797	47	6.8	46	71	11	159	28	20	28	23	1.99
64388026--64388073	24	2.0	24	100	0	96	25	16	20	37	1.93
64390620--64390837	47	4.7	46	78	9	221	26	20	30	22	1.99
64390620--64390837	94	2.4	91	85	6	271	26	20	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64394417--64394517	32	3.2	32	76	9	91	33	16	13	35	1.89
64394706--64394737	15	2.1	15	100	0	64	46	6	6	40	1.54
64401280--64401305	12	2.2	12	100	0	52	26	23	0	50	1.50
64404247--64404288	13	2.9	14	80	13	50	54	0	0	45	0.99
64404251--64404287	16	2.3	16	86	13	58	59	0	0	40	0.97
64404714--64404768	23	2.2	26	84	12	71	43	7	9	40	1.64
64405783--64405812	12	2.5	12	94	0	51	56	16	0	26	1.40
64406387--64406425	17	2.2	17	86	13	53	20	0	0	79	0.73
64406387--64406425	18	2.2	18	86	13	55	20	0	0	79	0.73
64406754--64406786	16	2.1	16	100	0	66	42	33	6	18	1.75
64407432--64407463	14	2.3	14	94	0	55	84	0	6	9	0.78
64409352--64409611	40	6.6	40	88	4	359	23	26	22	27	1.99
64409352--64409611	79	3.3	79	90	3	364	23	26	22	27	1.99
64409362--64409611	119	2.1	119	88	5	364	24	26	22	27	1.99
64414387--64414560	31	5.5	31	85	2	215	28	17	28	25	1.98
64414624--64414688	27	2.4	27	86	0	85	38	12	24	24	1.90
64414738--64414805	34	2.0	34	85	2	93	30	14	25	29	1.95
64419163--64419221	29	2.0	31	80	12	70	40	0	18	40	1.51
64429305--64429489	40	4.6	39	84	5	212	24	22	27	25	2.00
64429305--64429489	79	2.3	81	84	7	236	24	22	27	25	2.00
64429358--64429522	79	2.1	79	82	6	192	26	20	27	24	1.99
64436167--64436433	40	6.7	40	96	1	475	29	20	28	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64448406--64448443	16	2.5	15	84	12	51	39	2	18	39	1.65
64450021--64450096	38	2.0	38	100	0	152	31	13	23	31	1.93
64451285--64451429	40	3.6	40	83	4	175	26	24	24	23	2.00
64454402--64454455	26	2.1	26	86	6	74	12	24	44	18	1.85
64459328--64459386	28	2.1	28	96	0	109	33	11	22	32	1.90
64470145--64470192	17	2.8	17	81	9	53	54	12	0	33	1.38
64470899--64471060	81	2.0	81	100	0	324	48	17	6	28	1.71
64482935--64483003	31	2.2	31	86	0	102	47	13	7	31	1.69
64487286--64487436	40	3.8	40	83	3	171	23	29	23	22	1.99
64491782--64491957	46	3.8	45	80	10	203	21	21	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320