genome.fa.s12.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  184  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60956951--60957134	40	4.6	40	83	7	205	27	27	21	23	1.99
60964723--60964893	93	1.8	93	87	2	254	22	20	27	29	1.98
60980618--60980670	21	2.5	21	100	0	106	7	20	16	54	1.66
60980626--60980666	12	3.7	12	75	18	52	9	19	19	51	1.74
60990377--60990455	25	3.3	25	79	16	112	34	17	7	40	1.78
60990822--60990976	18	9.0	17	65	22	74	42	1	1	54	1.19
60990579--60991006	120	3.5	120	95	1	748	41	1	3	53	1.27
60990868--60990910	22	1.9	23	85	4	61	37	0	2	60	1.10
60990579--60991118	120	4.5	116	88	7	597	42	2	3	51	1.31
60991062--60991096	18	2.0	17	88	5	52	45	0	0	54	0.99
60991062--60991116	15	3.4	16	80	16	53	47	0	1	50	1.11
60990579--60991118	241	2.2	238	86	7	732	42	2	3	51	1.31
60991332--60991367	16	2.2	16	100	0	72	38	36	0	25	1.56
60992095--60992208	55	2.1	55	83	9	144	47	2	26	23	1.65
60992184--60992221	19	2.0	20	89	5	60	52	2	18	26	1.58
60992185--60992226	18	2.2	20	83	8	52	57	2	19	21	1.52
60992185--60992227	19	2.3	18	80	11	50	58	2	18	20	1.50
60996846--60997027	90	2.0	91	82	4	224	29	24	18	28	1.98
61003150--61003189	17	2.4	17	100	0	80	52	12	17	17	1.74
61004667--61004762	48	2.0	48	100	0	192	22	8	29	39	1.83
61017535--61017712	27	6.6	27	80	7	164	27	15	28	28	1.96
61017536--61017686	82	1.9	81	88	4	232	27	15	28	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61017532--61017712	82	2.2	81	83	2	229	27	15	28	28	1.96
61019950--61020009	30	2.0	30	86	0	84	28	25	6	40	1.80
61028588--61028630	5	8.4	5	97	2	77	39	0	0	60	0.97
61030539--61030595	30	1.9	30	88	0	87	29	22	8	38	1.85
61037441--61037499	29	2.0	29	96	0	109	32	10	22	35	1.87
61042390--61042429	21	2.0	21	85	5	55	32	20	10	37	1.85
61045154--61045186	14	2.4	14	94	0	57	21	45	0	33	1.52
61047911--61048102	40	4.8	40	89	3	280	25	28	24	21	1.99
61049830--61049921	25	3.7	25	72	12	82	33	31	13	21	1.92
61057127--61057265	24	5.7	24	72	10	120	32	30	13	23	1.93
61064076--61064239	90	1.8	88	82	7	206	42	15	7	34	1.76
61064357--61064423	30	2.3	29	84	7	82	65	0	1	32	1.02
61064389--61064470	31	2.7	30	83	7	87	69	3	1	25	1.12
61064649--61064845	9	20.3	9	66	17	65	32	5	2	59	1.34
61064749--61064812	28	2.3	28	75	5	67	29	3	3	64	1.24
61067311--61067825	140	3.7	137	83	7	666	40	8	5	46	1.57
61067311--61067997	257	2.6	276	81	12	765	40	8	5	45	1.58
61067710--61067945	120	2.0	119	88	4	352	39	9	6	44	1.62
61072445--61072496	27	1.9	27	84	0	68	26	9	13	50	1.72
61073673--61074044	203	1.8	201	84	3	514	41	12	11	33	1.80
61074070--61074161	45	2.0	45	97	0	175	31	10	25	32	1.90
61079372--61079433	18	2.8	24	68	27	73	43	22	8	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61082911--61082943	12	2.6	13	85	9	50	24	9	15	51	1.72
61085515--61085637	44	2.9	43	80	4	124	24	18	26	30	1.98
61090344--61090561	40	5.5	40	90	2	298	24	27	23	24	2.00
61093693--61094083	194	2.0	194	91	0	638	31	20	12	35	1.90
61094119--61094208	33	2.7	33	84	3	110	26	24	17	31	1.97
61099736--61099798	27	2.3	27	83	0	72	39	14	11	34	1.81
61099754--61099812	27	2.2	27	87	0	82	33	22	11	32	1.90
61099797--61099858	27	2.3	27	82	0	70	37	27	4	30	1.78
61099816--61100002	27	6.5	27	74	17	117	28	25	7	38	1.83
61099829--61099904	38	2.0	38	89	2	118	25	35	3	35	1.74
61099869--61100004	27	5.0	27	86	0	173	28	22	8	39	1.84
61099981--61100266	27	10.6	27	73	11	138	39	19	9	31	1.84
61099995--61100266	54	5.0	53	77	9	210	40	18	9	31	1.84
61099981--61100175	81	2.4	81	88	2	277	38	21	9	30	1.85
61099981--61100228	81	3.0	81	82	8	274	39	20	9	30	1.84
61100304--61100381	27	2.9	27	77	11	88	37	21	19	21	1.95
61101540--61101587	25	1.9	25	86	0	69	33	25	16	25	1.96
61101624--61101694	20	3.5	20	90	0	106	36	12	19	30	1.89
61101741--61101930	25	7.8	25	93	2	293	27	20	22	28	1.99
61108703--61108750	21	2.3	21	86	13	73	64	2	6	27	1.28
61111217--61111388	40	4.3	40	78	7	190	27	26	20	24	1.99
61111217--61111388	80	2.2	79	84	7	224	27	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61119178--61119247	35	2.0	36	88	8	108	21	31	24	22	1.98
61130877--61130980	26	4.0	26	79	2	111	28	11	19	40	1.86
61130881--61131149	27	10.2	27	79	10	220	30	8	21	39	1.84
61130881--61131149	79	3.4	79	80	11	270	30	8	21	39	1.84
61130881--61131142	52	4.9	53	76	11	236	30	8	20	40	1.83
61132415--61132698	41	7.0	41	88	2	358	32	19	26	22	1.97
61133599--61133672	20	3.6	20	87	3	94	63	1	0	35	1.03
61133599--61133683	28	3.0	28	80	13	104	60	1	0	38	1.05
61133597--61133681	7	12.1	7	80	9	75	60	1	0	38	1.05
61154842--61154963	51	2.4	51	90	0	181	32	13	22	30	1.93
61158823--61158856	7	4.9	7	100	0	68	29	0	55	14	1.40
61158816--61158856	21	2.0	21	90	0	64	31	0	51	17	1.46
61166457--61166536	37	2.2	37	86	4	108	27	31	17	23	1.97
61166667--61167373	47	15.1	47	92	0	1130	26	31	10	32	1.89
61166799--61166876	25	3.2	25	65	17	74	29	28	7	34	1.85
61166965--61167039	22	3.3	22	65	17	62	26	33	10	29	1.90
61167247--61167321	22	3.3	22	65	17	62	26	33	10	29	1.90
61172349--61172378	13	2.3	13	94	0	51	56	3	13	26	1.52
61174976--61175186	40	5.3	40	89	4	239	23	20	27	28	1.99
61182282--61182492	40	5.3	40	88	4	230	23	20	27	28	1.99
61189457--61189617	40	4.0	40	82	3	180	22	21	27	28	1.99
61189457--61189617	80	2.0	80	85	2	216	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61207093--61207296	40	5.1	40	80	8	157	26	27	21	25	1.99
61207112--61207294	40	4.6	39	80	8	192	26	27	21	24	1.99
61207112--61207294	79	2.3	81	81	8	214	26	27	21	24	1.99
61212391--61212498	29	3.8	29	79	6	112	25	28	16	28	1.97
61212722--61212772	8	6.4	8	73	8	50	9	21	19	49	1.77
61217289--61217327	14	2.8	14	92	0	60	38	10	20	30	1.86
61217923--61217979	19	3.1	19	77	10	64	49	0	0	50	1.00
61217936--61217978	22	2.0	22	86	4	61	41	0	0	58	0.98
61220061--61220235	49	3.7	49	77	9	175	26	30	17	25	1.97
61220061--61220241	99	1.9	99	84	7	248	25	30	17	25	1.97
61224280--61224448	40	4.2	40	82	0	212	44	24	15	14	1.85
61225379--61225426	21	2.4	19	82	10	60	22	10	0	66	1.22
61228916--61229007	48	1.9	48	90	0	148	27	20	23	28	1.99
61239211--61239317	26	4.2	26	95	4	193	35	7	22	34	1.82
61240937--61241049	27	4.2	27	85	3	129	16	23	23	36	1.94
61240935--61241049	54	2.1	54	88	3	169	16	23	23	36	1.94
61242043--61242126	28	3.2	28	64	25	74	23	17	29	28	1.97
61241997--61242219	49	4.5	49	86	2	284	25	18	27	28	1.98
61241988--61242227	99	2.4	100	84	2	313	25	19	27	28	1.98
61244056--61244085	7	4.4	7	95	4	53	26	0	0	73	0.84
61246294--61246326	17	2.0	17	88	5	50	21	6	18	54	1.64
61252510--61252542	16	2.0	17	94	5	59	24	6	18	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61252511--61252546	17	2.2	16	90	5	54	25	8	19	47	1.77
61260032--61260058	7	3.9	7	100	0	54	44	0	0	55	0.99
61277332--61277364	14	2.4	14	90	5	50	69	0	3	27	1.03
61287314--61287394	27	3.0	27	98	0	153	41	7	24	25	1.81
61289835--61289868	16	2.1	16	100	0	68	26	0	11	61	1.30
61290388--61290427	21	2.0	21	85	5	55	57	2	0	40	1.12
61291076--61291132	21	2.6	22	78	13	73	35	17	10	36	1.84
61291307--61291332	12	2.2	12	100	0	52	42	7	7	42	1.62
61293634--61293810	44	4.0	44	76	9	137	45	14	16	23	1.84
61293690--61293850	46	3.6	44	77	9	155	44	14	16	24	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320