genome.fa.s12.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  194  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64491778--64491949	93	1.8	93	93	0	299	21	21	29	27	1.99
64509683--64509957	40	6.8	40	88	2	365	24	22	27	25	2.00
64516491--64516531	21	2.0	21	100	0	82	63	7	4	24	1.40
64516645--64516729	22	3.9	22	73	10	59	24	5	1	68	1.19
64517328--64517388	30	2.0	30	100	0	122	47	9	22	19	1.79
64521316--64521345	3	10.0	3	92	0	51	33	3	0	63	1.11
64537630--64537719	47	1.9	46	88	2	135	22	21	25	31	1.98
64544284--64544551	47	5.7	46	75	9	199	22	28	19	30	1.98
64560041--64560092	22	2.4	22	93	0	95	25	11	28	34	1.91
64565239--64565263	12	2.1	12	100	0	50	48	0	52	0	1.00
64562706--64566179	988	3.5	994	86	5	4716	34	12	19	34	1.89
64574086--64574139	26	2.1	26	96	0	99	44	9	3	42	1.54
64574090--64574146	26	2.2	26	90	0	87	49	12	3	35	1.58
64574281--64574411	44	3.0	42	85	6	165	33	25	18	22	1.97
64584980--64585124	43	3.4	42	80	2	146	33	23	18	24	1.97
64589587--64589623	17	2.2	17	95	0	65	24	18	24	32	1.97
64590847--64590949	43	2.4	43	85	10	140	31	25	19	24	1.98
64636118--64636155	19	2.0	19	100	0	76	26	5	15	52	1.64
64636709--64636874	43	3.9	42	75	9	140	27	15	24	31	1.96
64639709--64639909	42	4.6	42	71	12	165	29	22	18	28	1.98
64663797--64663856	26	2.3	26	88	0	84	23	38	16	21	1.93
64663811--64663860	26	1.9	26	100	0	100	24	36	12	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64667376--64667410	12	2.9	12	95	0	61	8	14	42	34	1.76
64668490--64668565	33	2.3	33	95	2	136	38	15	5	40	1.70
64668626--64668890	40	6.6	40	83	3	300	33	25	17	23	1.96
64673723--64673772	24	2.1	24	96	0	91	38	14	12	36	1.83
64673835--64674022	40	4.7	40	88	4	252	37	26	14	20	1.92
64696149--64696310	40	4.1	40	82	8	170	18	29	13	38	1.89
64696171--64696310	20	7.1	20	68	22	98	17	30	12	39	1.87
64696157--64696304	79	1.9	79	82	2	190	17	29	13	39	1.88
64699967--64700011	21	2.1	21	87	0	63	15	15	22	46	1.83
64709126--64709161	18	2.0	18	100	0	72	50	16	16	16	1.79
64711981--64712011	2	15.5	2	93	0	53	0	48	0	51	1.00
64717478--64717507	12	2.4	13	94	5	53	16	26	0	56	1.40
64729430--64729652	119	1.9	120	84	6	301	25	27	22	24	2.00
64729428--64729652	40	5.7	40	85	6	287	25	28	22	24	2.00
64737329--64737551	119	1.9	120	83	6	292	25	28	22	24	1.99
64737327--64737551	40	5.7	40	85	6	278	25	28	22	24	1.99
64760448--64760672	40	5.7	40	82	6	251	25	28	21	24	1.99
64768617--64768766	55	2.8	54	80	4	149	26	15	29	28	1.96
64768589--64768766	27	6.6	27	77	6	146	25	15	28	30	1.96
64768590--64768745	82	1.9	81	81	6	190	25	16	28	30	1.96
64783062--64783248	48	3.9	48	93	0	311	35	6	27	30	1.82
64783416--64783523	37	2.9	37	92	1	171	25	18	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64792292--64792344	26	2.1	25	92	3	88	41	1	18	37	1.62
64792297--64792375	30	2.6	32	82	9	85	40	3	20	35	1.70
64793164--64793196	4	8.0	4	93	6	57	48	0	0	51	1.00
64806175--64806226	26	2.0	26	92	0	86	34	11	11	42	1.77
64815554--64815781	114	2.0	114	91	0	366	28	21	17	32	1.96
64818719--64818800	42	2.0	42	82	4	103	21	35	23	19	1.96
64825230--64825655	47	9.1	47	93	0	674	32	9	29	28	1.88
64825774--64825852	37	2.1	37	90	0	122	24	18	31	25	1.98
64827706--64827849	43	3.3	43	100	0	288	22	14	35	27	1.93
64827831--64827904	29	2.6	29	89	4	105	25	16	32	25	1.96
64828294--64828450	40	3.9	40	88	0	224	26	22	26	24	2.00
64831404--64831628	40	5.7	40	84	5	260	24	21	28	26	1.99
64831458--64831651	80	2.5	79	84	6	207	25	19	28	26	1.99
64839343--64839567	40	5.7	40	85	4	276	25	22	27	24	2.00
64842921--64843250	47	7.1	47	91	2	497	32	9	29	27	1.89
64842963--64843035	22	3.3	22	62	11	58	31	10	28	28	1.91
64842921--64843250	92	3.5	93	92	2	495	32	9	29	27	1.89
64843369--64843447	37	2.1	37	90	0	122	24	18	31	25	1.98
64845567--64845608	18	2.3	19	80	16	52	28	7	0	64	1.20
64847439--64847513	35	2.1	35	97	0	141	30	13	22	33	1.92
64857063--64857105	17	2.4	17	84	7	50	13	25	41	18	1.88
64858786--64858955	92	1.8	92	89	2	270	28	28	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64858777--64858951	46	3.8	46	75	15	164	29	27	21	21	1.98
64860426--64860546	34	3.6	34	83	5	147	24	23	25	25	2.00
64862815--64862914	49	2.0	49	94	0	173	30	15	28	27	1.96
64880453--64880565	55	2.1	55	84	3	147	32	25	27	14	1.94
64886105--64886187	30	2.8	32	83	10	113	21	25	19	33	1.97
64886410--64886479	25	2.7	26	86	8	99	25	21	25	27	1.99
64891504--64891597	6	15.3	6	70	12	66	48	12	17	21	1.79
64891525--64891597	31	2.4	31	88	0	101	47	13	17	20	1.81
64892092--64892201	27	4.0	28	88	3	145	37	20	21	20	1.95
64892424--64892748	27	12.0	27	90	0	481	24	20	20	34	1.97
64894158--64894308	42	3.5	42	75	8	144	27	20	17	33	1.96
64899238--64899500	40	6.6	40	88	3	325	26	27	20	24	1.99
64909851--64910113	40	6.6	40	87	3	316	27	27	20	24	1.99
64923851--64923902	26	2.0	26	92	0	86	26	28	9	34	1.88
64923889--64924021	45	3.0	45	92	0	221	27	27	22	22	1.99
64934384--64934559	46	3.8	46	76	12	180	21	20	29	28	1.98
64937499--64937548	15	3.4	15	86	2	66	10	18	12	60	1.59
64938555--64938636	39	2.1	39	100	0	164	31	19	19	29	1.96
64939982--64940153	46	3.7	46	78	10	188	21	19	29	29	1.98
64939975--64940146	93	1.8	93	89	0	272	22	20	28	28	1.99
64943551--64943580	12	2.5	12	94	0	51	23	23	36	16	1.94
64944589--64944838	48	5.2	48	79	4	256	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64944589--64944838	95	2.6	96	85	3	317	23	28	20	27	1.99
64945137--64945162	9	2.9	9	100	0	52	46	0	30	23	1.53
64946018--64946194	52	3.5	50	86	4	214	29	13	28	27	1.94
64946013--64946194	51	3.6	51	81	7	210	29	13	28	28	1.94
64947916--64948239	137	2.4	137	86	2	418	21	24	15	38	1.92
64947921--64948239	46	7.0	46	89	2	410	21	24	15	38	1.92
64951283--64951465	48	3.8	48	78	2	224	28	30	15	25	1.96
64956419--64956596	27	6.6	27	77	6	144	29	28	16	25	1.97
64956419--64956596	54	3.3	54	79	7	173	29	28	16	25	1.97
64973863--64973966	52	2.0	52	96	0	190	38	11	19	30	1.87
64975104--64975160	22	2.6	22	85	0	78	19	31	29	19	1.96
64976642--64976768	56	2.2	56	83	4	148	33	17	17	31	1.93
64978076--64978163	43	2.0	44	95	2	160	46	4	3	45	1.40
64981449--64981486	19	2.0	20	85	15	53	39	23	0	36	1.55
64981713--64981882	93	1.8	92	89	1	268	28	28	21	21	1.99
64981708--64981879	45	3.7	46	77	11	181	29	27	20	22	1.98
64989019--64989056	19	2.0	20	85	15	53	39	23	0	36	1.55
64989285--64989455	46	3.7	46	78	4	200	28	27	21	22	1.99
64989286--64989456	93	1.8	93	92	0	288	28	28	21	22	1.99
64997072--64997197	49	2.6	47	79	3	135	24	23	21	30	1.99
65002457--65002650	47	4.1	47	91	0	289	34	10	28	26	1.89
65002486--65002604	22	5.1	22	62	28	59	31	13	30	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65002620--65002902	48	5.8	47	88	6	413	36	6	26	31	1.81
65002620--65002899	98	2.9	98	95	1	499	36	6	26	31	1.81
65003049--65003157	37	2.9	37	95	0	191	22	19	31	26	1.98
65004428--65004779	40	8.8	40	93	0	596	23	21	29	26	1.99
65008741--65008934	47	4.1	47	91	0	289	34	10	28	26	1.89
65008770--65008888	22	5.1	22	62	28	59	31	13	30	24	1.93
65008904--65009186	48	5.8	47	88	6	413	35	6	26	31	1.82
65008904--65009183	98	2.9	98	95	1	499	35	6	26	31	1.82
65009333--65009441	37	2.9	37	94	0	182	23	19	31	25	1.98
65011982--65012042	32	1.9	32	89	0	95	31	32	11	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320