genome.fa.s12.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  112  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36237366--36237442	32	2.4	32	95	0	136	42	16	12	27	1.85
36237573--36237613	20	2.0	20	95	0	73	51	12	9	26	1.70
36241484--36241651	40	4.2	40	82	8	139	26	27	21	24	1.99
36241521--36241651	40	3.3	40	88	2	192	27	27	21	23	1.99
36241519--36241704	80	2.3	78	81	11	200	27	26	21	24	1.99
36253986--36254135	55	2.8	54	80	4	149	26	15	29	28	1.96
36253958--36254135	27	6.6	27	77	6	146	25	15	28	30	1.96
36253959--36254114	82	1.9	81	81	6	190	25	16	28	30	1.96
36261992--36262141	55	2.8	54	80	4	149	26	15	29	28	1.96
36261964--36262141	27	6.6	27	77	6	146	25	15	28	30	1.96
36261965--36262120	82	1.9	81	81	6	190	25	16	28	30	1.96
36280135--36280166	13	2.4	14	94	5	57	43	9	18	28	1.81
36281798--36281949	27	5.6	27	92	3	232	30	28	13	27	1.94
36281798--36281974	55	3.2	55	89	0	246	31	29	12	26	1.93
36304371--36304395	11	2.3	11	100	0	50	60	8	0	32	1.26
36306747--36306917	93	1.8	93	93	0	297	21	22	29	26	1.99
36306751--36306922	46	3.7	46	77	16	192	21	22	28	27	1.99
36310640--36310751	40	2.8	40	79	5	145	26	27	22	23	1.99
36317195--36317401	27	7.6	27	92	3	299	27	14	27	31	1.94
36317195--36317401	55	3.8	55	94	0	342	27	14	27	31	1.94
36325290--36325469	28	6.5	28	94	2	294	26	13	28	31	1.94
36325290--36325469	55	3.3	55	94	1	299	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36325290--36325469	83	2.2	82	93	1	306	26	13	28	31	1.94
36330837--36331007	93	1.8	93	92	0	288	22	22	28	27	1.99
36330841--36331012	46	3.7	46	77	13	190	22	22	27	27	1.99
36333161--36333344	49	3.7	49	82	5	235	28	25	19	27	1.98
36333162--36333349	100	1.9	100	92	0	313	28	25	19	26	1.99
36348968--36348993	12	2.2	12	100	0	52	15	23	34	26	1.94
36352704--36352873	40	4.3	40	84	3	191	23	21	30	24	1.99
36360603--36360772	40	4.3	40	85	1	207	23	21	30	24	1.99
36360625--36360807	79	2.3	80	80	1	208	25	21	29	24	1.99
36368430--36368652	80	2.8	79	82	3	232	24	21	28	25	1.99
36368483--36368652	40	4.3	40	89	0	225	24	21	28	25	1.99
36368505--36368687	79	2.3	80	82	1	226	25	20	28	25	1.99
36376513--36376578	31	2.1	31	81	10	73	3	21	3	72	1.11
36376523--36376585	26	2.5	25	76	19	67	3	17	3	76	1.05
36376525--36376578	16	3.5	14	82	14	54	3	16	1	77	1.00
36376540--36376583	20	2.2	20	84	12	54	0	15	4	79	0.89
36377565--36377700	71	1.9	71	89	5	213	26	18	24	30	1.98
36395718--36395922	53	3.8	54	81	1	205	23	23	18	34	1.96
36395729--36395917	55	3.5	53	80	5	200	22	23	19	34	1.96
36395904--36396025	47	2.6	47	90	0	190	24	23	14	36	1.93
36396788--36396845	30	1.9	31	82	3	73	27	24	10	37	1.88
36403380--36403430	24	2.1	25	82	13	63	43	23	0	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36403978--36404134	43	3.7	42	73	15	119	29	28	20	21	1.98
36404020--36404146	44	3.0	44	78	6	109	33	26	19	20	1.97
36409381--36409592	47	4.7	47	80	12	255	30	15	24	29	1.96
36409424--36409630	85	2.4	85	95	1	371	29	15	25	28	1.96
36409480--36409637	38	3.9	38	79	13	181	29	15	26	29	1.96
36412888--36412929	15	2.8	15	88	0	66	16	16	14	52	1.75
36415177--36415415	38	5.8	38	68	16	154	28	13	26	30	1.94
36415211--36415374	47	3.7	47	73	14	184	29	14	25	31	1.94
36415177--36415412	85	2.8	85	90	0	382	28	13	26	30	1.94
36415591--36415627	14	2.6	14	95	4	65	32	0	18	48	1.49
36418086--36418259	49	3.6	50	79	8	171	25	28	17	28	1.98
36418134--36418259	50	2.6	49	84	3	164	26	29	16	27	1.97
36418134--36418356	99	2.3	99	80	9	246	25	30	17	26	1.98
36418133--36418390	94	2.7	95	76	13	240	25	29	18	27	1.98
36419074--36419098	13	1.9	13	100	0	50	64	16	4	16	1.44
36425740--36426050	47	6.5	47	72	9	177	20	28	21	28	1.98
36425740--36426051	94	3.3	96	78	7	291	20	28	21	28	1.98
36426728--36426752	13	1.9	13	100	0	50	64	16	4	16	1.44
36429746--36429806	24	2.5	24	85	12	81	34	19	26	19	1.96
36430724--36431136	27	15.3	27	87	2	542	36	17	18	26	1.94
36431482--36431540	22	2.7	22	81	0	64	20	25	22	32	1.98
36431698--36431833	27	5.0	27	83	7	152	18	22	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36431951--36432066	6	18.8	6	71	15	85	18	19	12	48	1.81
36431954--36432015	25	2.5	25	91	0	97	19	20	14	45	1.85
36431951--36432054	31	3.4	31	73	15	106	19	20	13	47	1.82
36431979--36432049	19	3.8	19	74	10	83	18	21	14	46	1.83
36431973--36432066	37	2.5	37	85	0	134	19	20	12	47	1.81
36444957--36445047	31	2.8	33	77	8	98	46	6	0	47	1.28
36445020--36445068	16	2.9	17	76	14	57	59	8	0	32	1.27
36445018--36445111	26	3.4	28	78	16	83	62	5	1	30	1.24
36445053--36445080	11	2.5	11	100	0	56	64	7	0	28	1.20
36445018--36445164	43	3.3	43	77	16	129	63	3	2	30	1.25
36445090--36445166	12	6.4	12	78	15	70	63	0	3	32	1.12
36445084--36445221	20	7.1	20	72	16	87	60	0	4	34	1.21
36460041--36460118	40	2.0	40	97	0	147	33	7	10	48	1.66
36460091--36460181	45	2.0	45	93	0	155	32	9	5	51	1.58
36467856--36467893	3	12.7	3	94	0	67	0	34	0	65	0.93
36469017--36469054	19	1.9	20	89	10	60	21	34	2	42	1.67
36483245--36483429	79	2.3	80	80	8	207	26	28	21	23	1.99
36483226--36483429	40	5.1	40	80	8	220	25	27	21	24	1.99
36491339--36491523	40	4.7	40	83	6	216	25	28	21	24	1.99
36491339--36491523	79	2.3	80	81	8	207	25	28	21	24	1.99
36501190--36501215	13	2.0	13	100	0	52	53	15	30	0	1.42
36508230--36508408	27	6.6	27	84	3	119	36	20	16	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36508231--36508427	81	2.4	80	78	8	202	36	19	17	26	1.94
36508266--36508412	27	5.4	27	88	0	204	34	19	19	26	1.96
36508258--36508412	54	2.9	54	91	0	238	34	19	18	27	1.95
36509067--36509240	69	2.5	69	92	0	285	19	28	20	31	1.97
36511356--36511439	26	3.2	26	75	1	69	40	20	9	29	1.84
36511372--36511468	27	3.6	27	80	4	99	40	21	10	27	1.86
36511372--36511498	27	4.7	27	78	6	98	39	22	11	26	1.88
36511426--36511592	27	6.2	27	83	1	174	38	19	14	26	1.91
36511456--36511617	54	3.0	54	84	0	191	36	17	18	27	1.94
36518278--36518324	20	2.3	20	88	0	67	12	31	4	51	1.59
36518272--36518324	23	2.3	22	78	9	61	11	32	3	52	1.55
36521377--36521420	24	2.0	21	82	13	52	31	9	0	59	1.29
36521681--36521750	11	6.4	11	75	4	70	4	7	31	57	1.45
36522339--36522398	26	2.3	25	80	11	66	65	1	6	26	1.27
36522767--36522816	21	2.4	22	80	16	61	22	4	2	72	1.12
36522784--36522835	18	2.8	19	80	14	63	26	3	1	67	1.18
36523005--36523043	19	2.0	20	90	5	62	20	5	5	69	1.28
36524455--36524521	6	10.8	6	79	6	71	19	2	4	73	1.14
36524462--36524504	20	2.1	21	91	4	70	20	4	2	72	1.14
36526658--36526829	46	3.7	46	75	14	192	22	22	27	28	1.99
36526655--36526824	92	1.8	93	93	1	297	21	22	28	27	1.99
36544184--36544223	19	2.0	20	85	9	55	60	0	7	32	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36551873--36552021	43	3.5	43	85	1	192	28	25	15	30	1.96
36551873--36552046	43	4.1	42	82	4	188	29	26	14	29	1.96
36551873--36552031	85	1.9	86	82	4	205	28	25	15	31	1.95
36551831--36552046	85	2.5	86	74	5	199	31	25	13	30	1.94
36559495--36559606	27	4.2	26	86	5	134	35	22	24	17	1.95
36559495--36559606	54	2.1	54	86	3	154	35	22	24	17	1.95
36573078--36573148	16	4.4	16	87	0	106	36	8	28	26	1.86
36573130--36573223	44	2.1	44	86	7	127	34	5	24	36	1.78
36573329--36573450	58	2.1	58	87	3	174	51	3	0	45	1.17
36577250--36577283	18	1.9	18	88	5	52	20	5	26	47	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320