genome.fa.s12.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  96  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30744320--30744475	82	1.9	81	88	3	233	26	15	28	29	1.96
30744316--30744496	82	2.2	81	83	2	229	26	15	28	29	1.96
30750194--30750227	13	2.6	13	86	13	52	5	35	29	29	1.81
30751205--30751483	96	2.9	96	91	0	441	26	27	17	28	1.97
30751205--30751485	48	5.9	48	78	3	296	27	27	17	28	1.97
30753864--30753896	12	2.8	12	95	0	57	45	9	21	24	1.80
30754786--30754854	32	2.2	32	82	10	79	21	7	0	71	1.10
30774773--30774856	39	2.2	39	91	0	132	21	46	21	10	1.81
30775801--30775957	43	3.7	42	70	12	115	30	24	21	23	1.99
30783677--30783849	43	4.0	44	78	12	189	32	26	16	24	1.96
30791093--30791261	44	4.0	42	77	8	171	34	23	15	26	1.95
30791093--30791255	42	3.8	43	75	9	154	33	23	16	26	1.96
30791101--30791276	43	4.1	42	72	15	137	34	22	15	27	1.95
30793696--30793977	48	5.9	48	73	2	235	27	25	18	29	1.98
30793696--30793975	96	2.9	96	85	0	382	27	25	18	29	1.98
30807039--30807208	40	4.3	40	86	3	200	24	21	28	25	1.99
30807039--30807208	80	2.1	79	85	3	225	24	21	28	25	1.99
30807061--30807243	79	2.3	79	82	5	217	26	21	27	24	1.99
30814899--30815030	38	3.6	38	83	7	132	21	21	30	26	1.98
30827499--30827543	20	2.2	20	88	0	63	35	11	2	51	1.50
30830716--30830761	24	1.9	24	86	8	67	26	30	0	43	1.55
30835182--30835208	14	1.9	14	100	0	54	51	14	3	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30840045--30840208	46	3.5	45	82	7	170	23	29	19	28	1.98
30840040--30840255	47	4.6	46	74	15	160	24	29	18	27	1.98
30840038--30840264	93	2.4	92	77	10	230	23	29	18	27	1.98
30840626--30840699	30	2.5	30	100	0	148	29	27	14	28	1.95
30849564--30849605	20	2.2	20	91	8	70	80	0	19	0	0.70
30849603--30849642	20	2.0	20	85	5	53	52	0	15	32	1.43
30853928--30853981	20	2.6	21	88	11	85	51	16	11	20	1.74
30856847--30856909	30	2.1	30	84	0	81	19	25	25	30	1.98
30869089--30869122	8	4.1	8	96	3	59	14	0	23	61	1.33
30870479--30870536	30	2.0	29	83	10	73	25	31	31	12	1.92
30870968--30871039	30	2.4	30	92	0	117	18	36	26	19	1.94
30875435--30875512	24	3.0	25	77	17	88	39	15	20	24	1.91
30875433--30875524	28	3.4	28	82	10	111	38	14	21	26	1.91
30877652--30877711	29	2.1	29	100	0	120	41	6	10	41	1.65
30879036--30879070	5	6.8	5	87	6	52	0	14	0	85	0.59
30879035--30879071	11	3.5	11	88	7	58	0	13	0	86	0.57
30879961--30880003	9	4.5	10	80	19	56	53	0	0	46	1.00
30879953--30879990	19	2.0	20	94	5	69	52	2	0	44	1.14
30879945--30880012	27	2.5	27	85	7	84	57	1	1	39	1.17
30880377--30880430	21	2.7	19	81	10	63	29	1	1	66	1.12
30882849--30882981	41	3.1	42	80	12	139	31	27	18	23	1.97
30882880--30882982	41	2.4	43	85	4	147	34	25	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30882849--30883002	43	3.6	42	76	10	152	30	27	18	24	1.98
30889374--30889408	18	1.9	18	88	0	52	40	22	5	31	1.78
30893106--30893137	12	2.7	12	95	0	55	46	0	0	53	1.00
30896236--30896345	55	2.0	55	98	0	211	37	18	15	29	1.91
30898076--30898259	40	4.6	40	85	5	221	25	21	26	27	1.99
30898127--30898292	40	4.2	40	84	5	203	26	19	25	27	1.99
30906396--30906580	79	2.3	81	83	7	227	25	22	26	25	2.00
30906396--30906580	40	4.6	41	81	7	213	25	22	26	25	2.00
30906449--30906613	79	2.1	79	84	6	210	27	21	26	25	1.99
30910822--30911044	40	5.6	40	85	3	270	24	21	26	26	2.00
30910828--30911044	83	2.7	79	86	6	269	23	22	27	26	1.99
30912525--30912648	7	17.1	7	67	18	51	62	0	2	34	1.08
30912528--30912642	21	5.4	21	74	20	80	62	0	2	34	1.09
30912539--30912681	19	7.6	19	68	21	79	62	0	3	33	1.12
30912615--30912673	15	3.9	15	86	10	84	62	0	6	30	1.21
30913284--30913434	45	3.4	45	80	8	123	21	22	13	43	1.87
30926270--30926490	40	5.6	41	79	8	244	25	22	24	27	2.00
30948300--30948339	22	1.9	20	85	10	53	47	7	7	37	1.60
30951000--30951030	6	5.3	6	92	7	55	70	0	0	29	0.87
30958534--30958565	6	5.5	6	92	7	57	84	0	0	15	0.63
30960098--30960202	27	3.9	27	80	14	117	38	21	22	17	1.93
30960091--30960202	54	2.1	54	84	3	145	38	22	22	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30961633--30961706	24	3.1	24	90	0	112	21	40	5	32	1.76
30967318--30967426	27	4.0	27	81	10	125	38	22	22	16	1.93
30968818--30968867	24	2.1	24	92	0	82	22	42	4	32	1.72
30970941--30971079	74	1.9	75	87	4	210	44	9	14	31	1.77
30971063--30971477	137	3.0	137	87	2	620	41	6	5	45	1.55
30973946--30974033	43	2.0	44	88	2	133	35	23	12	28	1.91
30977373--30977433	30	2.0	30	83	0	77	14	24	36	24	1.93
30983800--30983829	14	2.1	15	93	6	53	13	10	13	63	1.52
30987447--30987567	48	2.5	49	84	7	142	19	18	28	33	1.95
30989828--30990072	27	9.0	26	80	4	229	41	21	17	18	1.90
30989828--30990059	81	2.8	79	84	3	284	41	22	17	18	1.90
30990067--30990254	81	2.3	80	79	3	189	26	14	17	41	1.88
30990078--30990256	27	6.6	27	82	2	171	24	15	17	42	1.88
30992225--30992278	22	2.5	22	78	3	65	22	35	29	12	1.91
31000030--31000253	40	5.6	40	82	5	256	25	23	27	24	2.00
31002674--31002713	21	2.0	20	90	5	62	45	25	0	30	1.54
31003624--31003668	17	2.6	17	89	0	72	11	28	24	35	1.90
31004652--31004694	12	3.5	12	82	14	52	58	9	9	23	1.58
31005501--31005528	8	3.5	8	100	0	56	42	0	28	28	1.56
31007316--31007375	27	2.2	27	91	5	95	46	20	16	16	1.84
31007457--31007547	27	3.5	27	82	4	98	20	18	20	39	1.93
31019922--31019973	27	1.9	27	100	0	104	46	3	3	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31019927--31019989	27	2.3	27	83	8	74	49	3	6	41	1.44
31026522--31026592	34	2.1	34	97	0	133	35	8	22	33	1.84
31028082--31028163	41	2.0	41	87	0	119	24	21	15	37	1.93
31044704--31044735	16	2.0	16	100	0	64	50	37	6	6	1.53
31046009--31046059	16	3.2	16	77	0	57	52	19	19	7	1.70
31046009--31046054	24	1.9	24	90	0	74	50	19	21	8	1.75
31046270--31046355	28	3.0	28	89	3	136	27	15	29	27	1.96
31047715--31047752	15	2.6	14	84	15	51	36	0	5	57	1.21
31050353--31050570	99	2.2	97	82	5	269	33	11	9	44	1.73
31061613--31061644	16	2.0	16	100	0	64	56	37	0	6	1.25
31062987--31063017	16	1.9	16	93	0	53	41	19	25	12	1.87
31063258--31063382	28	4.4	28	77	9	128	30	15	30	24	1.95
31074109--31074276	46	3.8	45	68	12	139	22	20	26	29	1.99
31077531--31077747	46	4.7	46	76	12	194	27	17	29	25	1.97
31077531--31077844	140	2.2	141	82	8	363	26	16	30	25	1.97
31077572--31077841	46	5.7	47	72	12	157	26	16	31	25	1.97
31082033--31082143	41	2.6	43	80	8	129	29	21	18	29	1.97
31091674--31091838	40	4.2	40	93	2	271	26	27	22	23	2.00
31091674--31091850	79	2.2	80	89	5	272	25	27	22	24	2.00
31122993--31123164	93	1.8	93	89	0	272	27	27	21	23	1.99
31122985--31123160	46	3.8	46	75	12	171	28	26	21	23	1.99
31123036--31123179	46	3.1	46	71	16	127	29	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31137949--31138036	34	2.6	33	80	8	88	29	23	21	25	1.99
31139370--31139395	13	2.0	13	100	0	52	30	38	23	7	1.83
31142356--31142382	5	5.4	5	100	0	54	22	0	0	77	0.76
31142475--31142528	17	3.2	17	84	10	83	44	11	16	27	1.82
31148778--31148893	39	2.9	38	88	6	160	26	29	19	24	1.99
31152990--31153047	20	2.9	20	92	0	98	34	12	18	34	1.88
31153096--31153226	24	5.5	24	92	1	219	32	23	19	24	1.98
31161059--31161106	25	1.9	25	86	0	69	33	25	16	25	1.96
31161154--31161209	11	5.5	11	71	16	57	35	12	19	32	1.89
31161143--31161209	20	3.3	20	93	0	116	34	11	20	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320