genome.fa.s1.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  100  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31073846--31073870	7	3.6	7	100	0	50	44	12	0	44	1.41
31076059--31076120	30	2.1	30	100	0	124	35	9	6	48	1.62
31079116--31079162	17	2.7	17	86	3	58	48	19	17	14	1.81
31079468--31079594	44	2.9	42	74	13	114	27	19	25	27	1.99
31081255--31081297	17	2.5	17	96	0	77	16	37	37	9	1.81
31083495--31083533	19	2.0	20	85	14	55	43	7	17	30	1.77
31087866--31087954	44	2.0	44	97	0	169	44	16	4	33	1.68
31087883--31087954	22	3.3	22	69	7	74	47	16	5	30	1.70
31091224--31091269	22	2.0	24	87	8	69	19	8	0	71	1.11
31091707--31091753	24	2.0	24	86	0	67	29	0	23	46	1.52
31097451--31097491	18	2.3	18	87	8	57	70	0	2	26	0.99
31098339--31098398	30	2.0	30	93	0	102	58	11	1	28	1.43
31099147--31099180	14	2.6	14	90	9	54	38	0	8	52	1.33
31113256--31113376	49	2.4	49	83	4	145	28	21	28	21	1.99
31117245--31117284	13	3.0	13	80	20	55	32	2	12	52	1.52
31121479--31121527	18	2.7	18	96	0	89	26	12	22	38	1.89
31124207--31124377	46	3.7	47	82	7	181	30	17	25	25	1.97
31124207--31124421	94	2.3	94	84	1	261	29	18	26	25	1.98
31124207--31124575	46	7.8	46	74	7	174	28	19	27	24	1.99
31124441--31124563	49	2.5	49	84	4	140	28	20	26	24	1.99
31127441--31127479	16	2.5	15	84	8	51	43	0	0	56	0.99
31134930--31135004	37	2.0	37	97	0	141	29	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31138915--31138953	10	3.8	10	86	3	51	84	0	2	12	0.72
31138928--31138962	16	2.2	16	90	5	54	80	2	0	17	0.84
31141345--31141383	20	2.0	20	84	0	51	28	17	17	35	1.94
31141530--31141612	11	7.9	11	76	9	75	60	0	2	37	1.10
31141546--31141751	30	6.9	29	70	15	91	64	0	1	32	1.11
31141535--31141734	10	19.4	10	71	12	79	63	1	2	34	1.13
31141535--31141772	19	12.2	19	70	16	102	63	0	2	32	1.13
31146096--31146147	28	2.0	25	85	11	68	13	23	25	38	1.91
31146281--31146346	33	2.0	34	84	3	89	25	24	25	24	2.00
31146305--31146986	342	2.0	343	92	0	1132	25	18	18	37	1.94
31149308--31149464	66	2.4	66	82	10	171	25	26	26	21	2.00
31149363--31149530	66	2.6	65	82	8	182	25	27	26	20	1.99
31150533--31150645	22	5.0	23	82	10	135	32	18	24	23	1.97
31150527--31150645	45	2.6	45	89	2	177	33	18	24	23	1.97
31150847--31150887	19	2.2	19	86	4	57	43	14	7	34	1.73
31157172--31157251	39	2.1	39	97	0	151	35	17	22	25	1.95
31163234--31163357	28	4.4	28	89	1	176	26	12	28	33	1.92
31170067--31170108	21	2.0	21	85	0	57	69	2	14	14	1.30
31171580--31171677	28	3.5	28	94	1	162	25	12	28	33	1.92
31171580--31171690	28	4.0	27	87	5	107	27	11	26	34	1.91
31176517--31176646	23	5.7	23	78	11	126	40	20	20	19	1.92
31176517--31176634	45	2.6	45	86	0	173	38	22	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31179315--31179418	41	2.5	41	82	3	120	22	25	24	28	1.99
31182364--31182471	44	2.5	42	78	7	119	31	28	17	22	1.97
31184647--31184953	27	11.4	27	90	1	472	34	17	20	27	1.95
31184955--31185017	27	2.3	27	100	0	126	20	20	20	38	1.94
31185344--31185375	16	2.0	16	100	0	64	25	31	37	6	1.81
31189863--31190150	134	2.1	134	92	0	486	35	18	20	26	1.95
31189863--31190167	27	11.4	27	90	1	452	34	17	20	27	1.95
31196301--31196550	27	9.3	27	89	0	349	32	18	21	26	1.97
31197228--31197287	27	2.3	26	82	2	66	21	20	21	36	1.95
31208586--31208909	43	7.5	43	92	0	479	32	14	19	34	1.91
31213338--31213447	56	2.0	56	87	0	157	35	20	15	29	1.93
31213415--31213907	43	11.5	43	83	7	608	31	27	16	24	1.96
31213350--31213469	56	2.1	55	83	8	145	35	20	14	29	1.92
31220027--31220204	27	6.6	27	84	3	205	29	28	15	26	1.96
31220048--31220203	82	1.9	81	88	3	233	29	28	15	26	1.96
31222498--31222566	29	2.4	28	76	13	68	23	26	17	33	1.96
31222518--31222709	61	3.2	61	71	12	189	26	24	15	33	1.95
31222463--31222835	119	3.1	117	81	7	412	25	22	16	35	1.95
31226824--31226890	16	4.2	16	82	0	89	26	26	4	41	1.75
31229925--31229981	30	1.9	30	88	0	87	42	7	24	26	1.80
31232593--31232770	27	6.6	27	83	3	205	26	15	28	29	1.96
31232594--31232749	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31232590--31232770	82	2.2	81	83	2	229	27	15	27	29	1.96
31237085--31237396	79	3.9	80	87	2	423	32	10	18	39	1.84
31237058--31237395	27	12.7	27	81	7	361	31	9	18	39	1.83
31237711--31237771	28	2.2	28	90	0	95	24	37	18	19	1.94
31240105--31240132	11	2.5	11	100	0	56	53	17	0	28	1.44
31240618--31240706	27	3.3	27	84	3	108	30	10	17	41	1.83
31240631--31241022	27	14.7	27	81	3	400	30	9	19	40	1.84
31240631--31241022	53	7.3	54	83	4	406	30	9	19	40	1.84
31240629--31241014	80	4.8	80	81	4	377	31	10	19	39	1.84
31241352--31241427	28	2.7	28	91	0	98	25	34	14	26	1.94
31248041--31248120	29	2.8	29	86	5	110	32	25	8	33	1.86
31251344--31251395	24	2.0	27	85	14	74	46	13	5	34	1.67
31254903--31255049	41	3.5	43	76	7	113	25	16	25	32	1.96
31264772--31264882	40	2.8	40	83	1	98	25	28	23	22	1.99
31264795--31264939	40	3.6	40	85	4	184	23	25	24	26	2.00
31266133--31266208	38	2.0	38	100	0	152	31	23	13	31	1.93
31269555--31269619	30	2.2	30	97	0	121	16	35	29	18	1.93
31270937--31270974	20	1.9	20	88	0	58	36	31	13	18	1.89
31275025--31275152	39	3.3	39	87	1	166	26	21	25	25	2.00
31275078--31275162	39	2.2	39	93	0	143	24	23	29	22	1.99
31282920--31283047	39	3.3	39	91	1	184	25	22	26	25	2.00
31282973--31283057	39	2.2	39	93	0	143	24	23	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31294506--31294630	39	3.2	39	87	2	162	27	20	26	25	1.99
31294556--31294640	39	2.2	39	91	0	134	24	21	30	23	1.99
31308966--31309005	14	3.1	13	82	10	55	67	10	7	15	1.41
31312632--31312668	16	2.3	16	100	0	74	16	21	32	29	1.95
31313143--31313275	45	2.9	45	74	8	135	24	20	18	36	1.95
31313153--31313278	23	5.5	23	77	6	114	23	19	19	38	1.93
31313901--31313933	17	1.9	17	93	0	57	30	18	15	36	1.91
31315044--31315135	29	3.2	29	80	7	116	29	29	15	26	1.96
31315334--31315364	16	1.9	16	100	0	62	6	29	19	45	1.75
31328555--31328585	16	1.9	16	100	0	62	51	9	12	25	1.70
31330532--31330599	32	2.1	32	97	0	127	25	8	23	42	1.82
31331292--31331342	22	2.3	22	89	0	75	27	15	17	39	1.90
31334140--31334224	25	3.4	25	83	0	89	21	15	24	38	1.92
31334145--31334192	14	3.6	14	78	16	57	20	12	29	37	1.90
31335967--31336599	333	1.9	333	96	0	1160	36	18	7	37	1.79
31342987--31343078	33	3.1	28	72	17	78	27	26	21	25	2.00
31342990--31343052	33	1.9	33	93	0	108	25	26	20	26	1.99
31343432--31343483	27	1.9	27	92	0	86	25	13	19	42	1.87
31343439--31343509	27	2.6	27	81	0	79	26	18	19	35	1.95
31343500--31343668	27	6.3	27	72	8	130	28	13	23	34	1.92
31343529--31343668	54	2.6	54	85	5	194	28	13	23	34	1.93
31355518--31355646	47	2.7	47	79	13	158	24	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31355473--31355644	46	3.7	45	76	11	159	24	27	18	29	1.98
31372732--31372951	46	4.7	46	80	11	225	23	30	18	27	1.98
31372732--31372955	94	2.4	92	83	7	265	23	30	18	27	1.97
31376601--31376644	22	2.0	23	90	4	72	54	4	0	40	1.21
31379007--31379045	18	2.2	18	85	0	51	53	12	17	15	1.72
31382402--31382463	31	2.0	31	100	0	124	48	16	9	25	1.76
31383170--31383237	32	2.1	32	100	0	136	47	11	2	38	1.55
31386695--31386740	23	2.0	23	100	0	92	39	8	17	34	1.80
31387934--31387965	5	6.6	5	92	7	57	81	0	0	18	0.70
31387935--31387965	9	3.3	9	95	4	53	80	0	0	19	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316