genome.fa.s1.2.7.7.80.10.50.1000.272.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  272  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90255521--90255549	15	1.9	15	100	0	58	48	20	6	24	1.74
90255745--90256119	183	2.0	183	95	0	669	42	14	15	27	1.86
90256190--90256219	14	2.2	13	94	5	51	36	13	0	50	1.42
90258522--90258565	21	2.1	21	91	0	70	34	34	2	29	1.70
90258787--90258813	7	3.9	7	100	0	54	29	55	0	14	1.40
90258802--90258845	21	2.0	22	91	4	72	43	38	0	18	1.50
90258919--90259138	41	5.4	41	92	0	343	21	22	19	36	1.95
90264598--90264685	34	2.5	34	81	3	95	27	21	27	23	1.99
90279684--90279777	34	2.8	34	77	6	84	29	24	25	20	1.99
90281917--90281964	22	2.2	22	96	0	87	45	14	10	29	1.78
90285070--90285127	30	2.0	29	83	10	73	44	3	18	32	1.67
90289861--90289962	40	2.5	40	85	3	125	34	23	15	26	1.95
90318996--90319035	21	2.0	20	90	5	62	35	0	22	42	1.54
90319001--90319043	21	2.1	21	83	12	54	32	2	20	44	1.65
90330500--90330538	16	2.4	16	95	0	69	38	0	23	38	1.55
90333298--90333356	29	2.0	29	90	0	91	52	13	5	28	1.61
90333738--90333786	23	2.1	23	96	0	89	32	6	16	44	1.72
90349970--90350045	22	3.3	22	67	22	66	31	13	30	25	1.93
90349963--90350129	47	3.6	47	94	0	280	32	12	28	26	1.93
90350293--90350479	37	5.1	37	94	0	293	25	18	29	26	1.98
90360443--90360588	40	3.6	41	83	9	185	26	27	22	23	1.99
90368119--90368356	48	5.0	48	76	7	225	27	22	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90368126--90368356	95	2.4	96	77	3	218	27	21	25	25	1.99
90379193--90379575	47	8.1	47	91	2	532	32	11	29	26	1.92
90379549--90379685	46	3.0	46	89	0	202	33	8	32	25	1.87
90379868--90379978	37	3.0	36	90	5	168	21	16	32	29	1.95
90381573--90381603	15	2.1	15	100	0	62	12	25	6	54	1.62
90385922--90385948	13	2.1	13	100	0	54	33	0	29	37	1.58
90389727--90389907	84	2.2	85	79	9	217	25	27	18	27	1.98
90403630--90403719	45	2.0	45	100	0	180	20	20	35	24	1.96
90404311--90404375	34	1.9	34	81	6	78	33	18	21	26	1.96
90404720--90404769	22	2.3	22	92	0	82	40	24	10	26	1.86
90408820--90408853	15	2.3	15	94	0	59	38	20	14	26	1.91
90408834--90409179	56	6.2	56	85	6	459	33	24	14	28	1.94
90410317--90410342	13	2.0	13	100	0	52	38	23	7	30	1.83
90415529--90415888	56	6.4	56	84	8	491	33	24	13	28	1.93
90415498--90415887	112	3.5	112	88	2	556	33	25	13	27	1.93
90420338--90420363	12	2.2	12	100	0	52	50	26	0	23	1.50
90421634--90421846	43	5.0	43	81	5	218	32	26	15	25	1.96
90423813--90423884	35	2.1	35	97	0	135	38	29	8	23	1.84
90436002--90436063	12	4.8	13	74	20	51	35	0	1	62	1.05
90436002--90436061	27	2.2	26	83	13	77	33	0	1	65	1.03
90437223--90437267	22	2.0	22	100	0	90	48	4	0	46	1.22
90439202--90439309	9	12.9	8	69	24	55	59	2	4	33	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90441116--90441423	126	2.4	126	96	0	553	32	20	17	29	1.96
90441314--90441558	72	3.4	71	89	3	339	32	19	15	31	1.94
90441498--90441734	88	2.7	87	82	5	262	33	19	17	29	1.95
90442301--90443022	74	9.7	73	85	7	920	31	20	17	30	1.95
90442113--90443008	233	4.0	224	82	9	972	31	20	17	29	1.96
90442507--90443022	146	3.5	146	93	2	865	31	20	16	30	1.95
90443026--90443199	69	2.5	70	83	5	194	32	22	14	30	1.94
90458748--90458839	3	31.3	3	69	16	50	61	3	4	30	1.31
90458757--90458852	38	2.5	39	76	8	99	60	3	3	33	1.28
90464740--90465923	177	6.7	177	82	4	1346	26	25	18	29	1.98
90465514--90465610	44	2.2	45	82	14	114	28	25	15	29	1.96
90466088--90466180	22	4.3	22	65	19	61	41	12	15	30	1.84
90466078--90466523	64	7.0	64	93	0	732	37	13	17	31	1.89
90467614--90467671	6	9.7	6	87	7	82	27	0	0	72	0.85
90467659--90467697	13	2.8	14	92	7	62	10	5	0	84	0.76
90467614--90467686	24	3.1	23	82	7	69	23	1	0	75	0.88
90467660--90467694	14	2.5	14	90	0	61	11	5	0	82	0.82
90467644--90467714	18	4.1	18	74	17	51	15	8	0	76	1.02
90469154--90469213	25	2.4	25	88	0	93	58	6	15	20	1.59
90474096--90474141	23	2.0	23	95	0	83	34	23	13	28	1.92
90475863--90475912	24	2.2	24	82	7	59	60	0	8	32	1.26
90477791--90477901	3	37.7	3	75	7	84	30	8	0	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90477800--90477870	20	3.6	19	77	17	74	28	7	0	64	1.19
90477980--90478021	3	14.7	3	80	9	52	30	4	0	64	1.14
90477992--90478021	12	2.5	12	100	0	60	33	6	0	60	1.23
90481272--90481317	19	2.4	19	85	7	58	19	19	13	47	1.81
90485200--90485324	64	2.0	64	95	0	223	32	16	13	37	1.88
90485399--90486020	132	4.7	132	86	2	745	28	19	23	28	1.98
90485571--90485901	45	7.5	45	69	10	189	26	20	24	27	1.99
90485970--90486126	44	3.5	44	75	6	156	28	17	24	28	1.98
90485943--90486092	44	3.4	42	76	10	147	30	16	24	28	1.97
90485943--90486126	89	2.1	88	86	1	251	29	16	25	28	1.97
90485399--90486136	264	2.8	264	82	4	632	28	18	24	28	1.98
90487851--90487960	3	37.7	3	75	8	84	30	8	0	60	1.32
90487855--90487929	19	3.9	18	80	11	78	29	6	0	64	1.19
90487860--90487963	43	2.4	44	80	6	122	29	8	0	60	1.33
90488036--90488077	3	14.7	3	80	9	52	30	4	0	64	1.14
90488048--90488077	12	2.5	12	100	0	60	33	6	0	60	1.23
90494261--90494306	23	2.0	22	83	4	56	41	13	2	43	1.55
90494571--90494653	31	2.7	30	83	10	98	31	10	4	53	1.57
90494571--90494664	31	3.1	31	83	6	86	31	9	4	54	1.52
90495108--90495145	14	2.7	14	91	0	58	36	7	18	36	1.80
90495129--90495170	19	2.2	20	95	4	77	26	9	14	50	1.73
90496704--90496743	21	1.9	21	100	0	80	20	25	7	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90501596--90501683	18	4.9	18	88	0	131	32	10	23	32	1.89
90509206--90509266	30	2.0	30	96	0	113	32	3	18	45	1.65
90514018--90514084	29	2.3	29	80	7	75	37	17	14	29	1.91
90519048--90519120	21	3.5	20	77	18	69	61	1	6	30	1.30
90519063--90519105	15	2.9	15	78	21	54	65	0	4	30	1.13
90519728--90519775	22	2.1	23	84	3	62	20	4	2	72	1.11
90520291--90520322	16	2.0	16	93	0	55	12	6	40	40	1.68
90520325--90520364	15	2.7	15	84	11	55	17	10	35	37	1.83
90521040--90521291	73	3.5	72	90	3	382	31	18	17	32	1.94
90521040--90521317	145	1.9	147	87	5	411	33	17	16	32	1.93
90521227--90521469	87	2.8	88	83	5	278	35	19	17	27	1.94
90521442--90521669	127	1.8	123	85	3	321	33	23	14	27	1.94
90521565--90521984	72	5.7	73	85	6	519	34	20	15	30	1.93
90521984--90522157	69	2.5	71	84	5	205	32	22	14	29	1.94
90532604--90532676	21	3.5	20	77	18	69	61	1	6	30	1.30
90532619--90532661	15	2.9	15	78	21	54	65	0	4	30	1.13
90552338--90552380	18	2.3	19	88	11	63	62	0	9	27	1.25
90552352--90552392	15	2.6	17	82	17	54	65	0	4	29	1.13
90552853--90552902	20	2.6	20	78	12	52	54	2	44	0	1.11
90552858--90552906	18	2.9	17	72	21	50	48	2	48	0	1.12
90553004--90553051	22	2.1	23	84	3	62	20	4	2	72	1.11
90553569--90553600	16	2.0	16	93	0	55	12	6	40	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90564180--90564227	25	1.9	25	87	8	71	27	18	22	31	1.97
90574475--90574526	23	2.2	24	80	19	65	34	0	1	63	1.06
90575061--90575276	114	1.9	114	91	1	353	17	12	20	50	1.78
90577527--90577592	28	2.3	28	84	2	78	36	3	3	57	1.29
90578779--90578841	30	2.0	30	82	11	74	50	1	1	46	1.20
90578867--90578942	35	2.2	35	81	9	84	53	6	0	39	1.27
90594585--90594635	20	2.5	20	87	6	59	29	11	13	45	1.79
90595996--90596050	19	2.8	19	80	2	65	43	0	1	54	1.10
90601666--90601850	40	4.6	39	82	5	194	24	22	27	24	2.00
90601661--90601848	79	2.4	82	82	8	217	25	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316