genome.fa.s1.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  140  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44675617--44675693	35	2.2	35	97	2	145	53	2	5	38	1.37
44675802--44675833	15	2.1	15	94	0	55	31	3	6	59	1.38
44675938--44675989	21	2.5	22	84	6	63	51	26	0	21	1.47
44676155--44676195	21	2.0	21	85	9	57	53	31	0	14	1.41
44683394--44683571	27	6.6	27	84	3	205	29	28	15	26	1.96
44683415--44683570	82	1.9	81	88	3	233	29	28	15	26	1.96
44687395--44687426	10	3.3	10	95	4	57	31	6	0	62	1.20
44690742--44691087	47	7.3	47	90	3	482	32	9	31	27	1.88
44696546--44696605	29	2.1	29	96	0	111	31	36	15	16	1.90
44697795--44697824	11	2.7	11	100	0	60	66	0	0	33	0.92
44699632--44699704	25	2.8	26	85	6	87	41	10	17	30	1.84
44702075--44702119	24	2.0	22	82	8	54	24	22	8	44	1.81
44702640--44702664	3	8.3	3	100	0	50	36	0	32	32	1.58
44709066--44709176	57	1.9	57	90	0	177	19	10	27	41	1.85
44710204--44710248	15	2.9	16	83	9	67	46	0	0	53	1.00
44710795--44710836	22	1.9	22	85	0	57	47	21	7	23	1.75
44711182--44711214	14	2.3	15	89	5	50	51	24	0	24	1.48
44713064--44713122	31	1.9	31	86	6	84	28	22	16	32	1.96
44716401--44716659	47	5.5	47	79	10	232	25	30	17	26	1.97
44719276--44719309	18	1.9	17	88	5	50	61	11	11	14	1.56
44734169--44734353	40	4.7	40	80	6	207	25	27	22	24	2.00
44734171--44734351	79	2.3	80	80	10	201	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44750147--44750355	79	2.6	78	90	2	319	25	29	21	23	1.99
44750147--44750355	40	5.3	40	91	1	305	25	29	21	23	1.99
44750150--44750408	79	3.3	80	85	4	258	25	28	21	24	1.99
44750340--44750417	40	1.9	41	82	10	97	26	28	21	23	1.99
44758093--44758355	120	2.2	119	82	4	316	26	28	20	24	1.99
44758093--44758302	40	5.3	40	92	0	314	26	29	20	23	1.99
44758096--44758355	80	3.3	80	86	3	267	25	28	21	24	1.99
44758287--44758364	40	1.9	41	82	10	97	26	28	21	23	1.99
44765745--44765796	23	2.3	22	75	21	54	9	23	1	65	1.32
44776227--44776252	11	2.4	11	100	0	52	23	19	7	50	1.73
44778251--44778402	27	5.7	28	77	11	108	39	23	9	26	1.86
44778272--44778404	27	5.0	26	78	9	124	39	23	9	27	1.86
44778251--44778419	54	3.2	54	75	10	150	40	22	10	27	1.86
44778396--44778805	27	15.2	27	83	3	468	30	21	7	40	1.81
44778396--44778805	81	5.1	81	84	4	533	30	21	7	40	1.81
44778396--44778806	54	7.6	54	86	2	524	29	21	7	40	1.81
44785184--44785355	40	4.3	40	88	2	222	25	27	21	25	1.99
44785186--44785408	40	5.6	39	83	5	216	25	27	21	25	1.99
44785184--44785408	80	2.8	79	80	7	240	25	27	21	25	1.99
44785340--44785417	40	1.9	41	82	10	97	26	28	20	24	1.99
44793937--44794006	27	2.6	26	95	2	95	31	28	12	27	1.93
44793937--44794034	28	3.5	28	90	2	135	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44797655--44797760	27	4.0	26	79	8	106	36	22	10	30	1.88
44797710--44797773	27	2.4	27	81	5	76	40	20	10	28	1.86
44797656--44797785	54	2.4	54	80	5	145	38	22	10	29	1.86
44797780--44798289	27	19.2	27	79	8	399	31	21	7	39	1.81
44797780--44798255	81	5.9	82	82	5	496	31	21	7	39	1.82
44799911--44800093	79	2.3	81	83	7	223	24	27	22	24	2.00
44799890--44800093	40	5.1	40	81	8	229	24	27	22	25	2.00
44808098--44808278	79	2.3	80	81	7	208	24	28	22	24	1.99
44808077--44808280	40	5.1	40	80	8	220	25	27	22	25	1.99
44812333--44812387	26	2.0	27	83	16	69	45	12	12	29	1.79
44815404--44815533	46	2.8	47	84	2	145	25	15	26	32	1.95
44819391--44819420	6	5.0	6	95	0	51	70	0	0	30	0.88
44822767--44822807	22	1.9	22	90	5	66	36	7	17	39	1.77
44823611--44823688	37	2.1	38	90	2	122	35	19	16	28	1.93
44823611--44823765	37	4.2	37	77	7	116	36	17	15	30	1.91
44826057--44826267	104	2.0	104	97	0	395	37	6	6	49	1.54
44835333--44835411	29	2.7	29	86	5	106	27	32	15	24	1.95
44839382--44839559	27	6.6	27	84	3	205	29	28	15	26	1.96
44839403--44839558	82	1.9	81	88	3	233	29	28	15	26	1.96
44847568--44847745	27	6.6	27	84	3	205	29	28	15	26	1.96
44847589--44847744	82	1.9	81	88	3	233	29	28	15	26	1.96
44849890--44849950	10	5.9	10	77	11	61	36	11	19	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44849890--44849950	21	2.9	20	82	4	77	36	11	19	32	1.88
44849890--44849942	11	5.0	11	79	6	65	35	13	20	30	1.91
44857635--44857804	86	2.0	86	91	0	277	32	7	25	34	1.84
44865239--44865353	46	2.5	44	82	12	126	23	26	19	31	1.98
44865281--44865450	46	3.7	45	80	7	189	24	28	17	29	1.97
44872604--44872717	46	2.5	45	85	4	158	24	26	18	30	1.98
44874660--44874730	37	1.9	37	94	0	124	36	21	2	39	1.68
44877121--44877215	42	2.3	42	84	0	127	30	24	17	27	1.97
44877121--44877227	42	2.5	41	80	5	124	30	23	17	28	1.97
44883683--44883729	21	2.2	21	84	0	67	17	25	31	25	1.97
44885843--44885914	35	2.1	35	100	0	144	31	34	2	30	1.72
44890259--44890291	17	2.0	17	88	5	50	6	42	33	18	1.75
44903286--44903330	23	2.0	23	90	0	72	20	15	22	42	1.89
44904471--44904565	32	3.2	32	60	22	78	36	15	13	33	1.87
44904454--44904571	58	2.0	58	100	0	236	40	15	13	30	1.86
44911222--44911298	35	2.2	36	83	6	104	24	2	3	68	1.19
44911250--44911316	26	2.5	26	86	11	84	25	2	4	67	1.24
44911484--44911525	22	1.9	22	85	9	59	50	0	7	42	1.30
44915788--44915841	4	13.5	4	96	0	99	24	1	25	48	1.61
44916425--44916613	25	7.6	25	75	11	127	29	15	17	38	1.90
44916450--44916596	50	2.9	48	80	6	150	30	16	15	37	1.90
44916466--44916618	50	3.1	49	81	3	164	28	14	16	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44917911--44917989	39	2.0	39	92	0	131	31	24	18	25	1.98
44920874--44920945	20	3.7	21	80	10	66	59	4	0	36	1.17
44920875--44920938	19	3.4	18	83	12	76	59	3	0	37	1.13
44920873--44921014	9	15.6	9	67	17	62	61	2	0	34	1.15
44920953--44920996	19	2.3	18	85	11	61	70	2	2	25	1.10
44921859--44921883	13	1.9	13	100	0	50	80	0	4	16	0.87
44935758--44935826	30	2.3	31	80	14	83	8	14	15	60	1.57
44937952--44938146	49	3.9	49	78	4	185	26	18	28	27	1.98
44937953--44938146	50	3.9	50	80	1	201	25	18	28	27	1.98
44942198--44942243	24	2.0	24	82	4	58	34	2	6	56	1.37
44942632--44942745	56	2.0	56	100	0	228	38	5	21	35	1.76
44947186--44947217	15	2.0	17	88	11	50	43	3	6	46	1.44
44947507--44947572	28	2.3	30	76	15	75	65	3	7	24	1.33
44948683--44948714	13	2.5	13	100	0	64	18	0	15	65	1.27
44952930--44952978	25	2.0	25	84	4	64	63	8	0	28	1.23
44952942--44953006	25	2.9	23	80	15	66	66	7	0	26	1.19
44952968--44953006	19	2.0	20	90	5	62	71	7	0	20	1.10
44953602--44953704	42	2.5	42	80	0	116	31	15	21	32	1.94
44957229--44957309	29	2.8	29	88	5	119	23	14	34	27	1.94
44959907--44960091	40	4.7	40	82	6	216	24	22	27	24	2.00
44959959--44960124	79	2.1	79	78	6	176	25	20	27	25	1.99
44969419--44969596	27	6.6	27	85	3	214	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44969420--44969575	82	1.9	81	89	3	242	26	14	28	30	1.95
44969416--44969596	82	2.2	81	84	2	238	27	14	27	30	1.95
44990450--44990512	33	1.9	32	90	3	99	41	25	9	23	1.85
44990728--44990883	41	3.8	41	89	6	235	28	22	20	28	1.98
44992420--44992444	13	1.9	13	100	0	50	68	24	0	8	1.16
45001714--45001832	45	2.7	45	85	6	147	23	28	21	26	1.99
45001768--45001907	75	1.9	75	89	3	219	29	28	20	21	1.98
45001843--45002006	45	3.6	45	94	0	292	28	28	22	20	1.98
45002004--45002080	38	2.0	38	92	0	127	32	25	22	19	1.97
45005387--45005417	16	1.9	16	93	0	53	35	22	0	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316