genome.fa.s1.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  166  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52796510--52797448	178	5.3	178	84	4	1088	30	17	25	26	1.97
52796508--52797331	44	18.5	43	69	10	334	30	18	25	26	1.98
52796511--52797405	356	2.5	356	87	2	1219	29	17	25	26	1.98
52796544--52797541	534	1.9	534	80	5	1201	30	16	25	27	1.97
52802927--52802972	19	2.4	19	96	0	83	43	10	17	28	1.82
52805359--52805394	16	2.2	17	90	9	58	36	0	2	61	1.11
52805359--52805400	13	2.9	14	82	13	50	42	0	2	54	1.13
52805409--52805486	38	2.0	38	81	16	90	51	0	2	46	1.14
52806071--52806110	14	2.8	14	88	3	53	52	0	15	32	1.43
52813399--52813474	38	2.0	38	100	0	152	31	13	23	31	1.93
52814663--52814807	40	3.6	40	85	4	193	25	24	25	24	2.00
52821458--52821533	38	2.0	38	100	0	152	31	13	23	31	1.93
52823301--52823685	40	9.6	40	92	1	619	23	28	20	27	1.99
52826758--52826902	40	3.6	40	85	4	193	24	24	26	23	2.00
52829026--52829109	26	3.2	26	94	0	150	34	4	23	36	1.76
52830594--52830646	26	2.0	26	85	7	72	37	22	15	24	1.92
52832666--52832776	47	2.4	47	83	6	145	35	22	16	26	1.95
52838902--52838940	4	10.2	4	89	10	64	0	25	0	74	0.82
52839832--52839937	43	2.5	42	84	4	133	25	16	26	31	1.97
52857473--52857647	46	3.8	45	78	7	181	28	29	20	21	1.98
52857481--52857651	93	1.8	93	91	0	279	28	29	21	21	1.98
52857478--52857667	46	4.1	46	71	20	137	28	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52860801--52860984	27	6.8	27	82	5	203	28	8	21	42	1.81
52860983--52861074	27	3.4	27	86	5	132	39	7	25	28	1.83
52860963--52861099	54	2.5	53	77	10	143	34	8	24	32	1.86
52866922--52867236	40	7.9	40	93	1	519	22	22	28	26	1.99
52866921--52867243	119	2.7	118	89	3	488	23	21	27	26	1.99
52867244--52867317	29	2.6	29	85	6	89	22	16	29	31	1.96
52872759--52872841	31	2.7	31	96	3	152	27	26	16	28	1.97
52873062--52873130	25	2.8	26	86	6	90	24	23	27	24	2.00
52873939--52874003	27	2.4	27	79	5	69	23	24	16	35	1.95
52874057--52874164	27	3.9	27	75	13	94	32	7	17	42	1.77
52874120--52874299	54	3.3	54	80	4	159	28	9	20	41	1.84
52874120--52874270	27	5.6	27	82	6	157	29	7	21	41	1.80
52874120--52874270	81	1.9	80	83	8	198	29	7	21	41	1.80
52874120--52874298	81	2.2	81	79	7	195	29	8	20	41	1.83
52874302--52874393	27	3.4	27	80	5	105	41	7	21	29	1.81
52875930--52876055	55	2.2	56	88	2	182	26	12	28	32	1.93
52875930--52876055	28	4.5	28	90	2	182	26	12	28	32	1.93
52875958--52876068	28	4.0	27	90	3	116	28	11	26	33	1.91
52883520--52883645	55	2.2	57	87	5	177	26	12	27	32	1.93
52883520--52883645	28	4.5	28	90	4	175	26	12	27	32	1.93
52883548--52883658	28	4.0	27	90	3	116	28	11	26	33	1.91
52892078--52892195	35	3.4	35	80	0	137	25	25	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52899319--52899503	79	2.3	81	83	7	227	24	27	22	24	2.00
52899319--52899503	40	4.7	40	82	7	225	24	27	22	24	2.00
52924239--52924267	13	2.3	13	94	5	51	58	10	0	31	1.31
52929908--52930117	46	4.5	47	77	14	161	28	16	29	25	1.97
52930041--52930222	96	1.9	98	82	7	237	25	19	30	24	1.98
52938555--52938646	38	2.4	38	88	0	139	40	17	14	28	1.88
52940142--52940269	46	2.7	48	84	12	183	39	8	0	51	1.33
52941604--52941648	20	2.1	23	84	12	60	37	0	13	48	1.42
52941767--52941957	101	1.9	101	86	2	276	31	16	24	28	1.96
52941767--52941986	101	2.2	101	84	4	266	30	16	25	27	1.97
52956427--52956575	78	1.9	79	83	6	196	44	10	7	37	1.67
52956843--52956941	10	10.6	9	68	18	51	61	2	4	32	1.26
52957135--52957215	28	2.8	28	81	11	83	29	3	2	64	1.24
52957195--52957297	19	5.3	19	72	19	79	35	0	0	62	1.09
52957251--52957298	10	4.9	10	76	5	53	33	0	2	64	1.05
52957226--52957296	29	2.5	28	77	8	74	35	0	1	63	1.03
52957462--52957512	25	2.0	25	84	3	66	43	1	11	43	1.52
52961870--52961964	28	3.4	28	76	0	91	17	13	29	38	1.89
52969928--52969966	19	2.1	19	100	0	78	33	10	25	30	1.89
52970411--52970471	17	3.5	17	68	16	52	34	3	3	59	1.30
52974450--52974498	18	2.7	19	81	12	59	32	10	18	38	1.84
52980739--52980783	18	2.5	18	85	7	56	17	22	37	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52981716--52981764	18	2.7	18	84	12	57	32	14	16	36	1.89
52998830--52999106	40	6.9	40	92	0	455	24	28	20	26	1.99
53011328--53011435	26	4.2	26	93	0	180	33	7	23	36	1.83
53013020--53013163	54	2.7	54	93	2	245	17	24	23	34	1.96
53013023--53013181	27	5.9	27	82	11	184	18	24	22	34	1.96
53013023--53013181	81	2.0	80	84	8	207	18	24	22	34	1.96
53014701--53014900	106	1.9	105	95	1	364	25	26	17	31	1.97
53020162--53020257	23	4.2	22	81	5	93	15	15	29	39	1.88
53020162--53020257	46	2.1	46	84	3	122	15	15	29	39	1.88
53022490--53022604	50	2.3	50	93	0	194	17	40	19	22	1.91
53032556--53032590	17	2.0	18	88	5	54	17	37	25	20	1.94
53043554--53043658	43	2.4	43	93	0	183	27	29	17	25	1.97
53044275--53044305	15	2.1	15	93	0	53	54	25	0	19	1.44
53044801--53044827	14	1.9	14	100	0	54	44	22	0	33	1.53
53052103--53052129	14	1.9	14	100	0	54	44	22	0	33	1.53
53052695--53052731	19	1.9	19	94	0	65	29	32	8	29	1.86
53060332--53060387	26	2.2	26	100	0	112	42	33	7	16	1.75
53062748--53062898	74	2.0	74	96	0	275	25	30	17	25	1.98
53067280--53067309	15	2.0	15	93	0	51	43	6	3	46	1.46
53069043--53069086	22	2.1	22	91	8	74	29	13	29	27	1.94
53070733--53070766	17	2.0	17	88	0	50	64	0	0	35	0.94
53071725--53071781	29	2.0	29	89	6	89	33	47	1	17	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53071750--53071822	37	2.0	37	91	0	119	27	52	2	17	1.59
53071764--53071833	18	3.8	18	69	10	61	25	52	2	18	1.59
53072165--53072289	61	2.0	60	79	11	130	28	4	4	61	1.37
53072575--53072621	17	2.8	16	81	15	51	25	2	6	65	1.27
53072608--53072657	13	4.1	12	78	14	57	30	4	0	66	1.10
53072758--53072999	126	1.9	126	94	0	430	29	17	15	37	1.90
53084287--53084810	45	11.6	45	67	13	195	28	20	24	25	1.99
53084278--53084743	135	3.5	133	85	4	567	28	21	23	27	1.99
53085032--53085095	29	2.2	29	83	5	85	31	50	1	17	1.55
53085061--53085135	37	2.0	37	94	0	132	28	53	1	17	1.52
53085885--53085937	21	2.6	21	81	3	63	28	5	3	62	1.35
53086079--53086311	126	1.8	126	96	0	430	28	17	16	37	1.91
53086768--53086820	21	2.5	21	81	3	61	52	5	9	32	1.57
53093984--53094352	184	2.0	184	98	0	720	36	13	14	35	1.85
53095109--53095154	16	2.9	17	84	15	64	50	0	6	43	1.28
53105362--53105429	33	2.1	33	91	0	109	25	10	35	29	1.89
53108872--53109036	90	1.8	90	82	2	215	26	26	19	28	1.99
53108966--53109080	42	2.7	42	84	0	131	28	26	17	27	1.97
53109098--53109218	48	2.5	48	86	5	156	24	28	18	28	1.98
53109974--53110022	25	2.0	25	100	0	98	28	32	8	30	1.86
53117562--53117635	29	2.6	29	89	4	105	25	16	32	25	1.96
53126758--53126824	29	2.3	29	75	14	66	46	1	20	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53132135--53132188	25	2.1	26	83	10	67	33	7	11	48	1.67
53136897--53136952	27	2.1	27	96	0	103	32	7	17	42	1.77
53138779--53138832	25	2.1	26	86	3	74	35	7	11	46	1.67
53150078--53150269	47	4.1	47	90	1	278	32	11	30	25	1.91
53150255--53150378	46	2.7	46	88	0	176	35	9	29	25	1.88
53153558--53153659	40	2.6	40	90	4	154	27	23	27	21	1.99
53161394--53161575	40	4.6	40	88	2	251	25	20	27	26	1.99
53161394--53161542	40	3.7	40	91	0	253	24	20	27	27	1.99
53165086--53165119	18	1.9	18	88	5	52	47	8	8	35	1.66
53184735--53185002	40	6.7	40	96	0	491	29	20	27	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316