genome.fa.s1.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  133  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42566448--42566666	27	8.2	26	77	8	192	33	10	16	39	1.82
42566402--42566584	81	2.3	81	81	3	208	33	8	19	38	1.82
42566448--42566666	53	4.1	53	82	4	246	33	10	16	39	1.82
42566574--42566686	26	4.3	25	79	8	100	34	9	15	40	1.80
42566682--42566737	26	2.1	27	86	3	78	25	3	23	48	1.67
42574977--42575334	48	7.6	48	70	10	200	26	25	19	28	1.99
42574979--42575334	96	3.8	96	72	9	248	26	25	19	28	1.98
42575121--42575211	42	2.2	42	84	4	112	27	28	16	27	1.97
42574974--42575334	186	1.9	186	83	3	458	26	25	19	29	1.98
42577527--42577658	43	3.1	43	73	11	112	23	18	26	31	1.97
42577573--42577789	92	2.4	92	86	3	310	26	18	23	31	1.97
42578519--42578565	17	2.6	19	80	16	55	27	2	27	42	1.67
42579358--42579437	39	2.1	39	100	0	160	28	17	20	33	1.95
42588322--42588438	43	2.8	42	84	6	148	24	18	28	28	1.98
42588322--42588532	41	4.9	42	74	13	169	24	18	26	29	1.98
42588322--42588530	92	2.4	84	80	14	251	24	19	26	29	1.98
42588392--42588569	51	3.7	49	71	15	149	25	19	24	30	1.98
42588349--42588571	92	2.4	92	90	1	340	25	18	25	30	1.98
42589298--42589339	17	2.4	18	84	11	52	23	0	33	42	1.55
42602145--42602354	27	7.9	27	82	4	221	43	22	7	26	1.80
42602145--42602367	80	2.8	77	80	9	234	43	22	7	26	1.80
42602145--42602404	81	3.2	81	78	4	208	41	22	7	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42602388--42602446	27	2.2	27	93	0	100	37	13	16	32	1.88
42603113--42603222	6	17.8	6	69	15	73	18	19	13	49	1.80
42603113--42603217	31	3.6	31	80	10	114	18	19	14	48	1.81
42603144--42603205	19	3.7	18	72	28	64	17	20	14	46	1.83
42603113--42603210	25	3.7	25	77	15	106	18	19	14	47	1.82
42610396--42610496	43	2.4	42	85	5	123	35	26	16	20	1.94
42613626--42613677	27	1.9	27	84	7	70	19	25	25	30	1.98
42619760--42619792	11	3.1	11	91	8	59	27	18	18	36	1.94
42619832--42619882	25	2.0	25	84	0	66	27	21	23	27	1.99
42626375--42626413	10	3.8	10	93	6	69	30	17	17	33	1.94
42626375--42626414	21	1.9	21	100	0	80	30	17	17	35	1.93
42633745--42633796	26	2.0	26	88	3	77	32	15	19	32	1.93
42635352--42635523	43	4.0	43	77	12	165	27	18	21	32	1.96
42636242--42636285	23	1.9	23	85	0	61	15	6	27	50	1.70
42642346--42642943	301	2.0	301	97	0	1124	38	22	10	28	1.87
42643439--42643579	47	3.0	47	97	0	264	49	6	17	26	1.70
42644411--42644522	46	2.5	44	84	12	147	25	16	29	27	1.97
42644553--42644682	47	2.7	48	78	5	147	23	20	32	23	1.98
42644502--42644682	96	1.9	98	84	10	246	25	17	32	24	1.97
42651971--42652073	46	2.3	44	82	14	131	25	16	32	26	1.96
42652925--42652949	13	1.9	13	100	0	50	0	24	40	36	1.55
42653468--42653520	26	2.0	26	100	0	106	28	3	26	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42654749--42655018	50	5.5	50	79	11	179	25	27	18	28	1.98
42654792--42655030	50	4.9	50	82	6	265	25	27	17	29	1.98
42654791--42654964	95	1.8	95	87	2	260	25	26	18	28	1.98
42657695--42657739	14	3.0	15	87	6	56	57	15	15	11	1.64
42660247--42660357	54	2.1	53	89	1	168	17	22	21	38	1.93
42660247--42660357	27	4.2	26	83	5	132	17	22	21	38	1.93
42664402--42664579	95	1.9	94	87	6	261	24	30	19	26	1.98
42664355--42664593	50	4.9	50	80	10	251	24	30	18	25	1.98
42670980--42671086	51	2.1	51	87	3	153	40	7	16	35	1.77
42678507--42678540	12	2.7	13	86	4	52	85	0	0	14	0.60
42681833--42681909	21	3.8	21	83	8	106	20	29	12	36	1.90
42685786--42686220	47	9.4	47	90	3	677	31	9	30	28	1.88
42686339--42686417	37	2.1	37	88	4	115	25	18	30	25	1.98
42690425--42690629	40	5.1	40	82	7	220	25	21	27	24	2.00
42690425--42690610	80	2.3	82	88	3	281	25	22	27	25	2.00
42694191--42694313	47	2.7	44	80	13	133	28	17	31	21	1.97
42694191--42694363	46	3.7	46	77	6	161	28	19	28	23	1.98
42700143--42700177	13	2.7	13	95	0	61	5	14	60	20	1.54
42705633--42705815	79	2.3	80	82	7	221	25	27	22	24	2.00
42705612--42705815	40	5.1	40	81	8	229	25	27	22	25	2.00
42708410--42708469	27	2.3	26	82	2	66	36	20	21	21	1.95
42708437--42708576	67	2.1	67	83	2	172	32	22	27	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42712519--42712657	69	2.0	69	100	0	278	31	21	18	28	1.97
42715350--42715611	39	6.6	39	87	5	311	25	21	27	24	1.99
42715402--42715644	78	3.1	79	86	6	255	26	20	27	24	1.99
42719360--42719411	27	2.0	26	84	3	68	34	21	26	17	1.95
42722873--42722915	22	2.0	22	81	9	52	41	11	2	44	1.53
42724929--42725092	42	3.9	42	79	4	161	29	23	15	31	1.95
42728632--42728793	39	4.2	39	87	1	236	28	29	20	21	1.98
42728632--42728793	77	2.1	78	90	1	254	28	29	20	21	1.98
42730784--42730821	18	2.1	18	100	0	76	26	10	13	50	1.73
42733652--42733875	46	4.8	47	75	11	203	29	19	28	22	1.98
42733708--42733878	91	1.9	92	86	6	249	27	20	28	23	1.99
42736088--42736214	42	3.0	42	84	6	161	29	26	13	29	1.94
42736173--42736292	47	2.6	47	82	1	143	29	25	15	29	1.96
42736314--42736462	31	4.8	31	82	3	192	27	24	19	28	1.99
42736438--42736566	50	2.5	51	87	5	181	25	22	16	35	1.94
42739438--42739554	47	2.5	47	86	5	157	23	31	17	26	1.97
42739298--42739553	141	1.8	141	82	8	335	25	30	17	27	1.97
42753651--42753729	38	2.1	38	95	0	140	22	24	34	18	1.97
42754464--42754612	42	3.5	42	80	2	165	29	22	18	29	1.97
42762653--42762829	27	6.5	26	81	6	167	25	16	28	28	1.97
42762649--42762808	82	2.0	81	87	3	232	25	16	29	28	1.97
42762653--42762829	82	2.2	81	83	3	212	25	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42769076--42769108	17	1.9	17	93	0	57	57	9	6	27	1.53
42769163--42769224	25	2.5	24	80	15	63	59	1	9	29	1.38
42769169--42769221	26	2.1	25	82	10	63	60	0	9	30	1.28
42770936--42771297	175	2.1	174	81	5	419	27	23	16	32	1.96
42771215--42771651	89	4.9	88	70	13	299	25	23	18	32	1.97
42771037--42771818	263	3.0	264	86	4	998	25	23	18	32	1.97
42779329--42779545	39	5.5	39	91	2	303	18	20	29	31	1.96
42779329--42779545	77	2.8	78	87	4	312	18	20	29	31	1.96
42785826--42786083	39	6.6	39	92	2	412	19	23	27	28	1.98
42788266--42788458	100	1.9	100	79	6	212	39	19	11	30	1.86
42789204--42789232	9	3.2	9	100	0	58	24	13	0	62	1.32
42789593--42789646	23	2.4	22	78	9	56	42	5	0	51	1.25
42800216--42800571	131	2.7	131	84	3	439	33	17	17	30	1.94
42801004--42801057	27	2.0	27	82	7	65	51	3	11	33	1.55
42801467--42801509	14	3.1	14	74	12	52	55	0	4	39	1.20
42801593--42801625	10	3.3	10	91	0	57	48	0	9	42	1.35
42807268--42807353	28	3.0	29	77	3	86	29	26	16	27	1.97
42807421--42807456	18	2.0	18	94	0	63	19	38	19	22	1.93
42807573--42807615	16	2.7	16	92	7	70	4	20	20	53	1.63
42807770--42807803	8	4.2	8	88	0	50	17	11	29	41	1.85
42807774--42807822	16	3.1	16	87	0	62	18	6	28	46	1.72
42810220--42810442	40	5.6	39	81	6	207	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42810294--42810477	79	2.3	80	78	5	187	26	22	26	25	2.00
42818059--42818281	40	5.6	39	80	6	198	24	21	27	26	2.00
42822612--42822788	37	4.8	37	92	0	291	25	31	18	24	1.98
42822914--42823351	48	9.1	48	94	0	687	31	30	5	33	1.80
42828722--42828798	29	2.7	29	87	4	111	28	28	15	27	1.96
42832900--42832924	13	1.9	13	100	0	50	48	0	8	44	1.32
42833315--42833347	17	1.9	17	93	0	57	57	9	6	27	1.53
42833544--42833590	23	2.0	23	87	0	67	55	10	4	29	1.53
42842251--42842313	31	2.0	31	96	0	117	42	11	12	33	1.78
42845623--42845657	17	2.1	17	100	0	70	60	22	5	11	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316