genome.fa.s1.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  145  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46270947--46271053	25	4.3	25	70	14	80	25	22	17	34	1.96
46270947--46271053	50	2.2	49	83	8	137	25	22	17	34	1.96
46274739--46274772	18	1.9	18	88	5	52	29	17	11	41	1.85
46275939--46276044	28	3.8	29	82	5	119	31	31	10	27	1.90
46282733--46282818	43	2.0	44	90	2	138	24	19	31	24	1.98
46283113--46283330	38	5.7	38	88	2	312	21	22	23	33	1.98
46283340--46283456	45	2.7	43	80	7	114	24	23	29	22	1.99
46285642--46285811	46	3.7	46	77	16	188	31	28	18	21	1.97
46285650--46285821	93	1.8	93	89	0	272	29	28	20	21	1.98
46285684--46285836	46	3.3	46	69	15	116	30	28	18	21	1.97
46289270--46289351	43	1.9	43	92	0	137	23	19	31	25	1.98
46289653--46289785	38	3.5	38	92	0	212	20	21	24	33	1.97
46289782--46289912	45	3.0	44	82	8	153	24	22	29	23	1.99
46291141--46291243	28	3.7	28	83	3	118	28	33	11	27	1.91
46291455--46291500	24	2.0	23	82	4	56	6	15	26	52	1.67
46294341--46294379	18	2.3	16	82	8	51	53	0	5	41	1.23
46294893--46295046	43	3.6	42	77	10	159	25	17	26	30	1.97
46307058--46307656	27	22.2	27	83	2	659	39	21	18	20	1.92
46314825--46314858	17	2.0	17	88	0	50	23	17	17	41	1.90
46322426--46322565	43	3.3	43	78	4	131	29	18	23	28	1.98
46327761--46327846	29	3.0	29	84	3	104	27	26	15	30	1.96
46327834--46327876	18	2.5	17	81	7	50	32	27	6	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46330087--46330111	7	3.6	7	100	0	50	28	0	56	16	1.41
46330299--46330333	18	1.9	18	100	0	70	37	17	11	34	1.85
46330300--46330340	18	2.3	18	91	0	64	39	17	14	29	1.89
46336895--46336959	28	2.3	28	81	0	85	38	10	23	27	1.88
46337068--46337119	26	2.0	26	100	0	104	15	15	30	38	1.88
46337032--46337158	65	2.0	65	93	0	218	17	18	29	33	1.94
46337097--46337357	39	6.7	39	90	3	384	18	22	29	29	1.97
46339845--46340062	79	2.7	80	81	7	230	25	26	22	25	2.00
46339859--46340062	40	5.1	40	81	7	227	25	26	22	25	2.00
46341191--46341366	56	3.1	56	99	0	343	22	23	9	44	1.81
46346591--46346655	28	2.3	28	86	0	94	38	9	23	29	1.85
46346728--46346911	39	4.7	39	84	2	208	19	20	28	31	1.97
46352136--46352268	69	1.9	70	89	1	205	31	14	17	36	1.89
46354047--46354286	48	5.0	48	92	2	390	34	7	28	30	1.84
46354047--46354286	98	2.5	96	90	2	390	34	7	28	30	1.84
46354426--46354536	37	3.0	37	88	2	152	29	18	25	26	1.98
46363382--46363437	23	2.4	23	85	8	69	57	8	17	16	1.64
46375996--46376213	40	5.5	40	92	1	341	23	23	27	25	2.00
46378901--46378944	22	2.0	23	81	4	54	47	20	2	29	1.62
46382846--46382966	28	4.3	28	84	4	145	23	11	35	28	1.90
46385322--46385439	40	3.0	40	83	5	166	26	27	22	24	2.00
46392894--46393050	40	4.0	40	84	4	185	26	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46395317--46395516	108	1.9	108	91	2	330	23	21	26	29	1.99
46397529--46397636	54	2.0	54	94	0	189	37	10	17	34	1.84
46398176--46398336	38	4.2	38	82	7	166	23	23	23	29	1.99
46398207--46398358	38	3.9	39	85	5	121	21	21	23	32	1.98
46400403--46400577	49	3.5	49	84	4	235	30	25	18	26	1.98
46400384--46400582	100	2.0	100	93	2	337	30	25	19	25	1.98
46405743--46405905	43	3.8	43	72	10	118	33	25	16	24	1.96
46420291--46420457	46	3.6	46	78	13	198	21	20	28	28	1.98
46420288--46420457	93	1.8	93	94	0	304	21	21	28	28	1.99
46422715--46422859	43	3.4	42	76	12	152	32	24	18	24	1.97
46424601--46424686	40	2.1	41	78	6	95	36	22	18	23	1.95
46427660--46427816	43	3.7	42	70	10	113	25	19	23	31	1.98
46433134--46433419	27	10.6	27	82	3	301	39	19	9	31	1.83
46433134--46433500	54	6.8	54	82	4	316	40	19	9	31	1.83
46433160--46433500	27	12.7	26	80	12	284	40	19	9	31	1.83
46433268--46433553	81	3.5	81	78	10	234	40	19	8	31	1.81
46433546--46434228	27	25.3	27	86	0	828	36	18	20	24	1.95
46434673--46434737	22	3.0	22	77	8	69	20	21	23	35	1.96
46434896--46434997	27	3.8	27	83	5	107	18	22	20	38	1.94
46434896--46434997	54	1.9	53	81	2	123	18	22	20	38	1.94
46435134--46435199	31	2.1	32	91	2	107	21	12	15	51	1.75
46435145--46435215	31	2.3	31	82	4	81	19	16	15	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46436239--46436300	30	2.1	30	100	0	124	32	3	37	27	1.73
46437232--46437543	80	3.9	80	83	2	315	39	19	10	31	1.85
46437232--46437543	27	11.6	27	83	5	319	39	19	10	31	1.85
46437589--46438428	27	30.9	27	84	3	1013	35	17	21	24	1.95
46438866--46438925	22	2.7	22	84	5	68	20	21	25	33	1.97
46439084--46439182	27	3.7	26	83	5	108	19	21	20	39	1.93
46439084--46439185	54	1.9	53	83	2	132	18	21	20	39	1.93
46439345--46439478	6	21.8	6	70	15	87	20	17	14	47	1.83
46439330--46439461	31	4.3	31	92	0	192	19	18	13	48	1.81
46441584--46441723	44	3.3	42	82	8	140	25	18	25	30	1.98
46441584--46441744	43	3.8	42	78	11	132	24	16	26	32	1.96
46443535--46443757	40	5.6	40	89	2	324	23	23	27	25	2.00
46451646--46451868	40	5.6	40	89	1	304	23	21	27	26	1.99
46458985--46459129	40	3.6	40	95	0	263	25	29	22	22	1.99
46467382--46467407	8	3.2	8	100	0	52	88	0	0	11	0.52
46470611--46470760	42	3.6	41	78	7	158	30	16	21	31	1.95
46476860--46477192	54	6.2	54	88	2	427	35	18	20	26	1.95
46476860--46477192	27	12.3	27	86	1	371	35	18	20	26	1.95
46478317--46478437	37	3.3	37	92	0	206	24	31	19	24	1.98
46478584--46478719	46	3.0	45	89	2	182	27	30	8	33	1.86
46478693--46479217	47	11.1	47	81	9	618	27	30	12	30	1.93
46478775--46479195	98	4.3	98	94	0	720	27	30	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46478693--46479196	196	2.6	194	89	4	773	26	30	12	29	1.93
46479143--46479218	23	3.3	23	63	23	59	28	31	10	28	1.90
46482769--46483160	40	9.8	40	92	0	658	25	28	21	24	1.99
46484376--46484498	37	3.3	37	92	4	203	25	30	19	25	1.98
46484642--46484778	46	3.0	46	87	0	193	26	30	8	35	1.85
46484757--46485229	47	10.0	47	78	10	469	26	29	13	30	1.94
46484834--46485229	51	8.1	49	86	6	461	26	29	13	30	1.94
46484872--46485229	98	3.7	94	86	7	482	26	29	13	30	1.94
46484834--46485229	149	2.7	147	92	3	656	26	29	13	30	1.94
46485155--46485230	23	3.3	23	63	23	59	28	30	11	28	1.92
46488211--46488272	31	2.0	32	87	3	90	20	24	19	35	1.96
46495511--46495593	42	2.0	42	97	0	157	32	15	20	31	1.94
46496692--46496815	40	3.1	40	84	2	167	33	25	16	24	1.95
46498016--46498073	27	2.1	28	84	9	75	37	12	18	31	1.88
46506672--46506733	28	2.2	28	88	0	97	37	11	20	30	1.88
46506845--46506973	43	3.0	43	81	10	138	25	19	29	25	1.98
46506906--46507000	41	2.3	43	83	7	115	28	21	29	21	1.98
46506906--46507053	40	3.6	41	74	5	138	26	21	29	22	1.99
46509958--46510010	21	2.5	21	100	0	106	15	20	33	30	1.93
46528768--46528847	43	1.9	41	87	5	115	25	22	31	21	1.98
46528780--46528874	41	2.3	43	83	7	115	28	21	29	21	1.98
46528780--46528927	40	3.6	41	74	5	138	26	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46531652--46531704	21	2.5	21	100	0	106	15	20	33	30	1.93
46544412--46544528	27	4.3	28	84	4	143	40	17	8	34	1.80
46544435--46544545	54	2.1	54	83	6	136	38	18	9	34	1.82
46544536--46544715	27	6.7	27	85	3	211	28	22	8	39	1.84
46544615--46544730	54	2.1	54	82	0	133	29	20	10	39	1.86
46544710--46544947	27	8.7	27	75	7	178	40	18	8	31	1.82
46544979--46545070	27	3.4	27	83	8	107	35	20	25	18	1.95
46546327--46546382	11	5.5	11	71	16	57	35	12	19	32	1.89
46546316--46546382	20	3.3	20	93	0	116	34	11	20	32	1.90
46546431--46546699	49	5.5	49	88	3	400	29	21	20	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316