genome.fa.s1.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  191  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61779573--61779618	20	2.3	21	82	14	62	26	17	28	28	1.98
61783414--61783467	27	2.0	27	100	0	108	29	18	11	40	1.85
61789783--61790327	40	13.6	40	94	0	930	28	19	27	24	1.99
61795814--61796318	40	12.6	40	94	1	843	28	19	27	24	1.99
61800681--61800730	20	2.5	20	80	6	57	18	18	20	44	1.88
61800760--61800797	20	1.9	20	94	0	67	10	26	23	39	1.87
61800714--61800835	60	2.0	60	82	6	149	13	28	21	36	1.91
61800764--61800835	20	3.6	20	73	3	65	9	29	23	37	1.87
61803516--61803567	27	2.0	26	84	3	68	17	26	21	34	1.95
61806146--61806323	27	6.6	27	83	3	205	26	15	28	29	1.96
61806147--61806302	82	1.9	81	88	3	233	26	15	28	29	1.96
61806143--61806323	82	2.2	81	83	2	229	27	15	27	29	1.96
61812494--61812655	79	2.1	79	100	0	324	29	9	27	33	1.89
61814258--61814760	47	10.6	47	92	2	799	29	29	8	33	1.86
61814258--61814760	143	3.5	142	93	1	803	29	29	8	33	1.86
61814258--61814760	190	2.6	190	94	0	889	29	29	8	33	1.86
61814619--61814694	22	3.3	22	66	16	64	26	30	10	32	1.90
61818476--61818521	19	2.4	19	96	0	83	34	23	32	8	1.86
61823589--61823710	6	20.3	6	100	0	244	32	0	17	50	1.46
61830515--61830602	6	14.3	6	72	17	65	47	12	19	20	1.81
61830536--61830602	25	2.7	25	88	0	98	46	13	19	20	1.83
61830720--61830827	27	4.0	27	83	5	112	37	21	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61830720--61830827	54	2.0	53	83	1	135	37	21	22	19	1.95
61830986--61831049	22	2.9	22	77	9	67	35	23	20	20	1.96
61831466--61831573	27	4.0	27	85	4	137	23	24	19	33	1.97
61831470--61831573	54	1.9	53	88	1	154	23	25	18	33	1.96
61831565--61831953	27	14.6	27	79	7	368	30	10	21	37	1.87
61831565--61831953	53	7.3	54	78	9	352	30	10	21	37	1.87
61831613--61831953	80	4.3	79	81	9	374	30	11	21	37	1.88
61831630--61831890	105	2.5	104	82	8	321	31	11	19	37	1.87
61832000--61832051	27	1.9	27	96	0	95	21	40	21	17	1.91
61835227--61835267	19	2.2	18	86	4	55	34	17	0	48	1.47
61840665--61840862	50	3.9	50	78	2	189	31	25	16	27	1.96
61840730--61840859	52	2.6	50	85	2	161	33	26	13	26	1.94
61844267--61844341	37	2.0	37	92	0	123	24	16	12	48	1.79
61852645--61852827	79	2.3	81	83	7	223	24	22	27	24	2.00
61852646--61852829	40	4.6	40	82	9	207	24	22	28	24	2.00
61852698--61852862	79	2.1	79	83	6	201	26	21	27	24	1.99
61860834--61861016	79	2.3	81	83	7	223	24	22	27	24	2.00
61860835--61861018	40	4.6	40	82	9	207	24	22	28	24	2.00
61860887--61861051	79	2.1	79	83	6	201	26	21	27	24	1.99
61875222--61875274	27	2.0	27	88	0	79	35	15	13	35	1.86
61891188--61891243	28	2.0	28	96	0	103	19	25	12	42	1.86
61892275--61892299	13	1.9	13	100	0	50	32	8	16	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61893416--61893698	138	2.1	138	91	0	460	44	7	8	40	1.61
61893680--61893823	75	1.9	75	95	0	261	32	13	9	45	1.74
61896299--61896374	27	2.8	27	87	0	107	14	21	23	40	1.90
61900509--61900631	49	2.5	50	80	5	151	29	28	14	27	1.95
61905368--61905534	54	3.1	54	81	2	210	36	20	22	20	1.95
61905376--61905534	27	5.9	27	74	10	137	36	19	22	21	1.95
61916672--61916826	43	3.7	42	78	12	165	27	14	24	34	1.94
61918376--61918512	40	3.5	40	81	6	163	26	27	22	24	2.00
61931773--61931880	52	2.1	52	96	0	198	26	7	17	48	1.74
61933571--61933595	12	2.1	12	100	0	50	32	0	16	52	1.44
61933851--61933920	28	2.5	27	88	9	97	31	28	12	27	1.93
61945417--61945789	48	7.7	48	77	4	356	24	28	18	28	1.98
61945422--61945799	96	3.9	96	86	2	499	25	28	18	28	1.98
61953136--61953507	48	7.7	48	75	6	322	25	27	16	29	1.97
61953141--61953519	96	3.9	96	84	2	474	26	27	16	29	1.97
61953617--61953659	19	2.2	19	83	8	50	48	11	4	34	1.60
61957188--61957239	15	3.2	15	73	19	50	46	0	1	51	1.12
61957272--61957311	19	2.1	19	90	9	64	40	0	0	60	0.97
61972985--61973024	18	2.2	18	86	0	53	27	7	10	55	1.60
61980189--61980223	3	11.7	3	87	0	52	31	2	2	62	1.24
61992737--61992905	82	2.0	83	94	1	295	35	27	2	34	1.70
61999005--61999054	16	3.1	16	83	11	66	40	6	14	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62004552--62004615	31	2.1	31	93	0	110	6	29	10	53	1.60
62010287--62010327	21	1.9	22	85	14	59	31	7	34	26	1.84
62025823--62025865	15	2.8	16	82	7	52	34	20	11	32	1.89
62027823--62027953	47	2.8	46	89	3	181	22	18	26	32	1.97
62027820--62027972	47	3.2	46	79	13	145	22	16	26	33	1.96
62032269--62032297	14	2.0	15	93	6	51	27	0	20	51	1.47
62039687--62039907	93	2.4	91	79	9	212	24	31	17	26	1.97
62039779--62039954	93	1.9	93	80	6	205	25	29	17	27	1.97
62039880--62040008	49	2.6	49	80	7	147	24	29	17	27	1.98
62044704--62044876	46	3.7	46	79	10	199	22	20	27	29	1.99
62044701--62044871	93	1.8	93	92	0	288	22	21	28	28	1.99
62045101--62045138	19	2.0	20	85	15	53	36	0	23	39	1.55
62052500--62052582	24	3.5	24	73	11	80	19	28	19	32	1.96
62052496--62052606	48	2.3	48	77	11	129	18	28	18	34	1.95
62056438--62056471	16	2.1	16	100	0	68	44	23	17	14	1.86
62057869--62058085	64	3.3	64	75	11	215	23	27	15	34	1.94
62057869--62058085	67	3.3	68	75	11	179	23	27	15	34	1.94
62059949--62060021	26	2.8	26	85	0	101	41	8	13	36	1.75
62061771--62061844	29	2.6	29	86	4	96	27	16	31	25	1.96
62064523--62064556	16	2.1	16	100	0	68	17	5	23	52	1.66
62064614--62064655	17	2.4	18	88	4	59	26	0	0	73	0.83
62068512--62068577	13	5.5	13	69	20	63	48	15	0	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62068510--62068586	23	3.3	23	88	0	118	48	14	0	37	1.44
62071265--62071315	18	2.8	18	87	0	75	15	5	39	39	1.72
62073283--62073322	20	2.0	20	85	9	55	47	25	0	27	1.52
62074027--62074109	42	2.0	42	80	7	96	33	24	15	26	1.95
62076721--62076773	23	2.3	23	83	6	63	49	15	1	33	1.55
62076731--62076781	23	2.2	23	89	0	75	49	13	1	35	1.54
62077120--62077159	19	2.0	22	85	14	59	55	2	2	40	1.27
62077120--62077160	21	2.0	21	85	9	57	56	2	2	39	1.26
62085416--62085636	40	5.6	41	78	9	219	25	23	26	23	2.00
62087333--62087388	22	2.5	23	72	16	64	50	3	10	35	1.55
62089370--62089415	21	2.2	21	96	0	83	17	4	32	45	1.68
62091321--62091345	13	1.9	13	100	0	50	16	36	32	16	1.90
62091824--62091950	32	3.9	32	87	3	148	36	22	10	30	1.88
62091824--62091957	65	2.1	65	80	5	146	35	22	10	31	1.88
62098244--62098333	32	2.8	32	91	0	144	38	24	8	27	1.85
62100791--62100849	31	1.9	31	100	0	118	42	5	5	47	1.47
62105177--62105212	19	1.9	19	88	5	56	25	27	5	41	1.77
62106689--62106814	46	2.6	48	91	3	193	27	18	30	23	1.98
62106829--62106957	49	2.6	49	82	9	140	28	20	27	23	1.99
62106683--62107001	142	2.2	139	82	8	360	26	18	29	26	1.98
62124852--62124926	22	3.3	22	66	23	64	30	12	32	25	1.92
62124849--62124924	24	3.2	24	63	29	63	30	11	32	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62124709--62125160	47	9.6	47	94	0	726	31	11	31	26	1.91
62128446--62128805	179	2.0	179	100	0	720	25	29	18	26	1.98
62129830--62129870	17	2.5	16	80	4	55	46	39	0	14	1.45
62130190--62130271	39	2.1	39	97	2	157	14	10	9	64	1.49
62130273--62130307	13	2.6	14	90	4	54	85	0	11	2	0.69
62132792--62132999	40	5.2	39	81	4	229	25	27	22	24	2.00
62141000--62141166	39	4.3	39	91	0	271	31	21	26	20	1.98
62141000--62141192	78	2.5	78	88	2	237	30	22	26	20	1.98
62144964--62145109	37	3.9	37	92	0	220	26	30	18	24	1.98
62145272--62145598	47	7.0	47	93	0	546	26	29	11	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316