genome.fa.s1.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  127  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40225145--40225231	40	2.2	40	89	0	138	31	24	21	22	1.99
40225205--40225295	39	2.5	37	85	7	114	26	23	29	20	1.99
40225162--40225285	35	3.3	38	78	10	128	28	23	26	21	1.99
40233043--40233174	40	3.3	40	88	2	176	28	22	23	25	1.99
40233060--40233187	39	3.3	39	87	1	166	27	22	25	25	2.00
40242486--40242748	40	6.6	40	88	3	325	25	20	27	27	1.99
40242525--40242783	80	3.3	80	83	4	249	26	20	27	25	1.99
40247446--40247487	22	2.1	19	86	13	57	45	2	0	52	1.13
40249156--40249182	13	2.1	13	100	0	54	40	0	37	22	1.54
40263036--40263267	40	5.8	41	85	3	303	25	21	28	25	1.99
40263036--40263287	120	2.1	119	87	2	362	24	20	28	26	1.99
40263036--40263267	80	2.9	80	90	1	349	25	21	28	25	1.99
40271156--40271407	40	6.3	41	82	5	295	24	20	28	26	1.99
40271156--40271407	120	2.1	119	85	3	337	24	20	28	26	1.99
40271156--40271407	80	3.2	80	86	3	330	24	20	28	26	1.99
40275561--40275892	47	7.1	47	92	0	504	33	11	28	25	1.91
40275868--40275956	46	1.9	46	83	0	115	33	11	32	22	1.89
40278477--40278713	48	5.2	48	78	11	282	26	18	27	28	1.98
40278512--40278670	42	3.6	42	80	12	203	26	17	26	29	1.98
40278477--40278713	90	2.6	90	95	0	420	26	18	27	28	1.98
40284331--40284585	47	5.4	47	90	1	366	27	29	8	34	1.87
40287698--40287738	8	5.2	8	91	2	66	51	24	21	2	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40287698--40287754	16	3.6	16	82	0	69	50	21	21	7	1.71
40287861--40287898	19	2.1	19	90	5	60	28	18	36	15	1.92
40287965--40288041	29	2.7	29	89	2	111	24	14	32	28	1.94
40290709--40291039	96	3.4	96	87	0	446	28	19	26	25	1.98
40290709--40291042	48	7.0	48	75	1	292	28	18	26	26	1.98
40292946--40292984	19	2.1	19	90	0	60	35	28	12	23	1.91
40292997--40293117	60	2.0	60	100	0	242	43	19	6	29	1.76
40295449--40295547	24	4.3	24	71	15	75	21	22	19	37	1.94
40303511--40303665	43	3.6	43	72	11	120	29	16	21	32	1.95
40307348--40307800	47	9.6	47	93	1	717	31	8	30	29	1.86
40307348--40307800	237	1.9	237	92	0	762	31	8	30	29	1.86
40307921--40307996	37	2.1	37	87	0	107	22	18	31	27	1.97
40309849--40309991	43	3.3	43	99	0	277	24	14	33	27	1.94
40309976--40310049	29	2.6	29	89	4	105	25	16	32	25	1.96
40310344--40310569	40	5.7	40	80	4	199	26	20	28	25	1.99
40310505--40310581	40	1.9	40	86	0	109	22	22	29	25	1.99
40313964--40314514	47	11.6	47	92	1	832	31	8	30	29	1.87
40313964--40314514	143	3.9	142	91	1	836	31	8	30	29	1.87
40313964--40314499	190	2.8	190	94	1	910	31	8	30	29	1.87
40314635--40314710	37	2.1	37	92	0	125	21	18	34	26	1.96
40320333--40320520	90	2.1	90	98	0	367	24	25	31	18	1.98
40321256--40321313	30	1.9	30	92	0	98	53	13	3	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40323545--40323584	19	2.1	19	90	0	62	30	22	7	40	1.81
40331060--40331108	21	2.3	21	92	0	80	12	22	42	22	1.86
40341982--40342088	27	4.0	27	72	11	94	35	10	24	29	1.88
40352767--40352862	47	2.0	47	97	0	183	34	12	31	21	1.91
40360558--40360708	40	3.8	40	80	5	146	23	29	24	23	1.99
40368471--40368698	40	5.7	40	93	0	348	30	20	26	22	1.98
40377060--40377246	40	4.7	40	94	1	313	31	20	26	21	1.98
40377060--40377246	79	2.3	80	93	0	313	31	20	26	21	1.98
40385531--40385758	40	5.7	40	95	0	366	29	20	27	22	1.98
40389407--40389561	40	3.9	40	82	8	190	22	29	24	23	1.99
40394713--40394841	43	3.0	42	70	9	109	27	19	23	30	1.98
40394735--40394875	43	3.3	42	76	6	115	28	18	24	29	1.98
40418281--40418435	40	3.9	40	82	8	190	22	29	24	23	1.99
40423583--40423711	43	3.0	42	70	9	109	27	19	23	30	1.98
40423605--40423745	43	3.3	42	76	6	115	28	18	24	29	1.98
40435424--40435533	42	2.6	43	79	4	125	24	20	24	30	1.99
40435385--40435541	43	3.7	42	74	10	140	24	20	24	29	1.99
40437554--40437731	27	6.6	27	83	3	205	26	15	28	29	1.96
40437555--40437710	82	1.9	81	88	3	233	26	15	28	29	1.96
40437551--40437731	82	2.2	81	83	2	229	27	15	27	29	1.96
40445493--40445669	27	6.6	27	82	5	196	27	14	28	29	1.95
40450676--40450753	27	2.9	27	84	3	95	32	14	28	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40455339--40455394	24	2.3	24	81	0	67	16	32	3	48	1.63
40456741--40456848	43	2.5	42	82	5	137	30	15	22	31	1.95
40464299--40464419	42	2.9	41	81	7	145	30	14	24	29	1.95
40464579--40464610	15	2.1	15	100	0	64	18	25	28	28	1.98
40466151--40466410	68	4.0	64	74	15	226	30	16	28	25	1.96
40468688--40468721	17	2.0	17	100	0	68	17	5	47	29	1.71
40479486--40479568	41	2.0	41	88	4	123	33	2	14	49	1.56
40483041--40483079	17	2.3	17	90	0	60	69	2	2	25	1.14
40483534--40483558	8	3.1	8	100	0	50	76	0	0	24	0.80
40486089--40486165	33	2.3	34	80	11	86	32	2	5	59	1.33
40495545--40495609	27	2.4	27	79	5	69	35	16	24	23	1.95
40496419--40496488	25	2.8	25	91	0	104	27	27	21	24	1.99
40502558--40502735	89	2.0	89	95	1	322	34	17	15	32	1.91
40503880--40503974	27	3.5	27	81	5	111	41	22	8	28	1.83
40503979--40504040	27	2.3	27	94	0	106	35	22	6	35	1.80
40504086--40504185	27	3.7	26	83	2	119	40	23	11	26	1.87
40504143--40504284	27	5.3	27	89	0	212	33	19	21	25	1.97
40504683--40504741	6	9.7	6	77	17	59	18	15	16	49	1.80
40512539--40512717	89	2.0	89	89	4	272	34	16	15	34	1.90
40514508--40514560	26	2.0	26	96	0	97	30	22	5	41	1.77
40517240--40517457	40	5.5	40	87	2	298	24	22	27	25	1.99
40525473--40525687	40	5.5	40	92	2	332	23	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40525469--40525687	79	2.8	80	90	4	340	24	23	27	24	2.00
40527647--40527718	37	1.9	37	97	0	135	38	16	20	23	1.92
40532246--40532280	6	5.8	6	86	0	52	17	5	0	77	0.96
40534056--40534182	61	2.1	61	79	5	132	25	29	20	24	1.99
40535947--40535980	18	1.9	18	94	5	61	17	32	23	26	1.97
40539572--40539757	40	4.7	40	84	5	207	26	20	26	26	1.99
40545790--40545885	40	2.5	40	82	3	124	37	36	13	12	1.83
40547563--40547611	26	2.0	26	88	8	75	30	0	6	63	1.19
40547990--40548128	24	6.0	23	73	9	95	38	18	20	23	1.94
40571497--40571529	16	1.9	18	88	11	52	48	21	15	15	1.81
40575450--40575547	28	3.5	28	90	2	135	31	28	13	26	1.94
40583733--40583830	28	3.5	28	90	2	135	31	28	13	26	1.94
40588100--40588418	50	6.6	49	77	9	275	23	27	19	28	1.98
40588100--40588426	145	2.3	146	84	8	429	23	28	19	28	1.98
40590395--40590436	22	2.1	19	86	13	57	45	2	0	52	1.13
40592236--40592338	37	2.8	37	98	0	197	25	32	20	22	1.98
40592479--40592812	48	7.0	48	91	2	505	32	27	5	34	1.80
40596805--40597034	40	5.7	40	91	1	361	25	28	20	25	1.99
40596805--40597034	121	1.9	120	90	0	361	25	28	20	25	1.99
40596805--40597034	81	2.9	80	92	1	370	25	28	20	25	1.99
40598312--40598414	37	2.8	37	93	0	170	26	31	18	24	1.98
40598555--40598796	48	5.0	48	95	0	412	31	28	6	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40626657--40626694	20	1.9	20	88	0	58	34	5	15	44	1.69
40626656--40626703	20	2.4	19	76	13	51	37	6	16	39	1.74
40628533--40628679	52	2.8	52	91	0	231	20	29	32	17	1.95
40629941--40630173	128	1.8	128	84	1	324	35	16	19	28	1.93
40631721--40631776	26	2.2	26	100	0	112	30	7	26	35	1.83
40638742--40638797	26	2.2	26	96	0	103	30	5	26	37	1.79
40642988--40643291	47	6.4	47	91	1	437	34	8	29	27	1.86
40649015--40649046	7	4.6	7	100	0	64	15	53	0	31	1.43
40652714--40652789	38	2.0	38	92	0	125	36	17	22	23	1.94
40661044--40661077	17	1.9	18	88	5	52	38	5	5	50	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316