genome.fa.s1.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  129  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41075409--41075537	49	2.6	49	80	4	145	22	26	21	29	1.99
41075555--41075675	46	2.6	46	82	2	143	23	28	18	29	1.98
41079191--41079461	29	9.4	29	75	6	165	37	13	24	24	1.91
41079261--41079461	29	6.9	29	78	6	174	38	13	24	22	1.91
41089491--41089758	29	9.2	29	80	2	214	38	14	23	22	1.92
41091456--41091682	49	4.5	49	84	6	276	29	14	29	26	1.95
41091462--41091650	101	1.9	99	88	6	283	29	13	29	28	1.94
41096702--41096727	10	2.6	10	100	0	52	23	0	0	76	0.78
41100040--41100122	24	3.4	24	74	11	71	34	19	20	25	1.96
41108643--41108689	16	2.9	16	75	12	51	44	0	0	55	0.99
41108646--41108693	14	2.9	17	74	25	50	45	0	0	54	0.99
41112167--41112241	37	2.1	36	94	2	132	25	16	17	41	1.89
41116133--41116159	5	5.4	5	100	0	54	40	0	0	59	0.98
41117081--41117133	16	3.3	15	74	10	52	33	7	24	33	1.84
41124313--41124344	5	6.4	5	100	0	64	40	0	0	59	0.97
41124562--41124603	13	3.2	13	86	6	57	78	0	21	0	0.75
41124561--41124593	17	2.0	17	94	5	59	78	0	21	0	0.75
41132710--41132906	42	4.7	42	82	2	216	46	15	19	18	1.84
41132710--41132906	84	2.3	84	86	0	268	46	15	19	18	1.84
41132710--41132884	21	8.3	21	77	0	161	46	16	18	18	1.84
41138925--41139003	21	3.9	21	66	3	63	41	12	26	18	1.87
41138942--41139128	21	9.0	21	64	10	71	44	13	20	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41138939--41139137	42	4.8	42	77	6	183	46	13	20	19	1.84
41140775--41140982	53	3.9	53	86	3	276	27	27	11	32	1.91
41141913--41141976	17	4.0	16	72	15	53	60	0	1	37	1.06
41142116--41142181	32	2.1	32	91	0	105	18	3	16	62	1.46
41144388--41144431	19	2.4	19	85	7	56	50	0	9	40	1.34
41153562--41153606	15	3.2	13	87	12	54	15	8	2	73	1.18
41157369--41157429	30	2.0	30	83	0	77	31	22	8	37	1.84
41160165--41160212	25	1.9	25	95	0	87	35	10	14	39	1.80
41163129--41163161	16	2.0	17	94	5	59	36	12	0	51	1.39
41163448--41163715	46	5.8	46	81	2	288	20	22	14	42	1.88
41163492--41163717	91	2.5	92	87	0	319	20	22	14	42	1.89
41163443--41163705	137	1.9	137	85	0	364	20	21	15	42	1.89
41175340--41175382	18	2.4	18	77	14	52	46	6	9	37	1.63
41175827--41176060	56	4.2	56	91	3	332	26	13	28	32	1.94
41175852--41176060	28	7.5	28	96	2	343	26	13	27	31	1.94
41182718--41182743	7	3.7	7	100	0	52	30	11	26	30	1.92
41200339--41200478	48	2.9	48	92	1	219	27	19	23	30	1.98
41201560--41201618	30	2.0	30	86	0	82	23	25	27	23	2.00
41204140--41204184	20	2.3	20	88	3	65	33	17	22	26	1.96
41204175--41204289	60	1.9	60	80	7	135	29	17	23	29	1.97
41209973--41210006	16	2.1	16	88	0	50	44	2	17	35	1.64
41211422--41211469	21	2.2	22	81	7	53	18	2	8	70	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41212634--41212684	20	2.5	20	83	0	66	43	39	7	9	1.67
41228348--41228382	17	2.1	17	89	10	54	40	0	2	57	1.14
41228915--41229016	37	2.5	43	71	26	103	52	0	0	46	1.07
41229007--41229051	20	2.2	21	88	4	65	42	4	2	51	1.34
41229001--41229050	21	2.4	22	83	10	68	42	4	2	52	1.31
41230546--41230634	44	2.0	44	86	4	126	43	2	8	44	1.48
41241493--41241524	15	2.1	15	100	0	64	18	6	6	68	1.32
41243103--41243215	37	3.1	36	74	18	101	39	2	5	52	1.38
41245530--41245631	47	2.2	47	83	3	125	34	23	19	22	1.97
41246551--41246605	27	2.0	27	82	6	67	7	16	7	69	1.35
41247010--41247042	3	11.3	3	87	6	50	60	0	3	36	1.12
41251881--41252010	67	2.0	66	95	1	233	31	20	22	25	1.98
41252616--41252681	25	2.6	25	92	0	105	22	18	24	34	1.96
41252741--41252791	27	1.9	27	84	4	68	49	1	17	31	1.58
41252773--41252849	13	5.8	13	73	4	55	46	2	15	35	1.60
41252858--41252882	13	1.9	13	100	0	50	48	4	16	32	1.64
41256924--41257221	40	7.5	40	90	3	442	24	23	27	25	2.00
41256920--41257221	120	2.5	120	94	2	520	24	22	27	25	2.00
41259335--41259362	3	9.3	3	100	0	56	32	0	0	67	0.91
41260704--41260747	18	2.4	18	73	0	52	13	9	11	65	1.46
41260736--41260812	21	3.7	21	70	16	61	23	5	5	66	1.33
41261038--41261135	27	3.7	26	77	8	81	32	4	5	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41261364--41261415	13	3.9	12	80	12	50	28	3	3	63	1.30
41261835--41262191	127	2.8	127	83	3	407	27	17	16	38	1.91
41266527--41266560	4	8.8	4	87	6	52	76	0	23	0	0.79
41266524--41266563	11	3.5	11	86	6	62	80	0	20	0	0.72
41266533--41266569	19	1.9	19	88	0	56	78	2	18	0	0.87
41268143--41268263	64	1.9	64	94	0	215	30	17	15	36	1.91
41268641--41268809	44	3.8	44	81	2	187	28	17	24	29	1.97
41270367--41270591	3	75.3	3	69	14	81	24	7	4	63	1.40
41270787--41270849	28	2.2	28	83	5	74	31	3	3	61	1.27
41271062--41271113	13	3.9	12	80	12	50	28	3	3	63	1.30
41271523--41271888	127	2.9	127	84	2	450	27	16	18	37	1.92
41273323--41273409	30	2.8	31	77	12	97	28	12	9	49	1.71
41274127--41274176	21	2.4	20	80	9	55	72	2	24	2	1.06
41277541--41277578	19	2.0	19	89	0	58	26	7	18	47	1.76
41280690--41280753	18	3.4	18	67	12	56	32	21	26	18	1.97
41280692--41280948	39	6.6	40	92	4	384	35	22	29	12	1.91
41290983--41291030	17	2.9	16	88	11	78	68	0	0	31	0.90
41291805--41291908	54	1.9	54	84	3	138	26	1	19	51	1.57
41291816--41292349	128	4.2	128	87	1	732	28	6	19	45	1.75
41296249--41296293	22	2.0	22	91	0	72	48	15	2	33	1.57
41300022--41300066	22	2.0	22	91	0	72	48	15	2	33	1.57
41302552--41302861	161	1.9	161	90	0	494	50	5	8	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41319566--41319605	20	2.0	20	100	0	80	50	0	0	50	1.00
41319561--41319605	20	2.4	18	85	7	54	46	2	0	51	1.13
41324805--41325138	171	1.9	170	84	8	446	48	10	29	12	1.73
41335665--41335740	34	2.2	34	86	4	100	32	23	21	22	1.98
41340951--41341027	38	2.0	38	100	0	154	40	10	7	41	1.68
41342329--41342427	28	3.5	28	84	2	135	20	9	8	62	1.50
41342329--41342445	28	4.1	27	76	10	101	21	11	6	60	1.53
41342329--41342445	57	2.1	57	85	3	155	21	11	6	60	1.53
41342976--41343190	90	2.4	90	88	2	335	20	19	21	38	1.94
41342994--41343190	45	4.4	45	78	6	213	20	19	21	38	1.94
41343775--41343815	20	2.0	20	100	0	82	41	24	4	29	1.75
41346461--41346668	46	4.4	46	79	8	163	25	29	18	26	1.98
41350237--41350352	29	4.0	29	81	1	144	28	30	14	26	1.95
41350564--41350614	24	2.1	24	96	0	93	13	23	13	49	1.78
41351284--41351308	4	6.2	4	100	0	50	76	0	0	24	0.80
41363522--41363579	28	2.0	28	83	9	73	17	41	18	22	1.90
41364584--41364700	46	2.5	46	84	6	139	24	29	17	28	1.98
41367035--41367166	46	2.8	47	84	8	164	25	29	15	28	1.96
41366987--41367161	92	1.9	94	85	11	245	25	29	17	28	1.98
41367037--41367208	46	3.7	47	82	7	158	26	29	15	29	1.96
41374164--41374243	29	2.8	28	85	7	108	27	33	15	23	1.94
41374164--41374243	28	2.8	28	85	7	108	27	33	15	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41377166--41377212	21	2.2	21	85	7	60	57	12	4	25	1.54
41379707--41379791	40	2.1	41	86	6	120	51	4	23	20	1.65
41379704--41379834	41	3.2	41	80	4	131	49	6	23	20	1.71
41387109--41387137	13	2.1	14	93	6	51	51	0	3	44	1.18
41388172--41388218	15	3.1	15	75	0	58	38	2	10	48	1.50
41393356--41393478	55	2.2	56	82	2	142	17	30	26	26	1.97
41403720--41403758	16	2.4	16	83	12	53	35	2	15	46	1.60
41405149--41405230	25	3.3	25	91	1	130	59	2	21	15	1.48
41405199--41405339	40	3.5	40	85	0	183	52	6	22	18	1.68
41405469--41405508	21	1.9	21	89	0	62	37	5	12	45	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316