genome.fa.s1.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  149  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47331292--47331349	16	3.6	16	90	0	89	31	29	0	39	1.57
47331283--47331349	32	2.1	32	88	0	98	32	26	0	40	1.57
47334880--47334974	27	3.5	27	80	5	102	42	22	7	28	1.80
47334979--47335279	27	11.3	27	89	2	419	29	21	8	39	1.83
47335283--47335425	27	5.3	27	82	5	128	43	20	6	28	1.78
47335262--47335450	54	3.5	52	75	7	148	41	19	7	30	1.80
47335273--47335449	81	2.2	81	82	2	212	43	18	7	30	1.78
47335300--47335508	27	7.8	27	81	5	174	40	20	10	29	1.84
47335383--47335684	134	2.3	134	83	5	362	35	19	17	27	1.94
47335469--47335710	27	9.0	27	88	1	335	33	19	21	24	1.97
47335469--47335710	80	3.0	79	86	4	324	33	19	21	24	1.97
47336140--47336201	22	2.9	21	80	7	70	20	22	22	33	1.97
47336360--47336461	27	3.8	26	88	5	132	18	24	20	36	1.95
47336606--47336678	31	2.4	31	93	2	121	20	15	15	49	1.79
47336621--47336698	6	12.8	6	77	12	70	20	16	15	47	1.83
47337542--47337569	3	9.3	3	100	0	56	67	0	0	32	0.91
47343945--47343979	16	2.2	16	89	0	52	14	5	17	62	1.49
47347071--47347152	26	3.2	26	89	0	137	34	24	8	32	1.86
47353270--47353413	37	3.9	37	82	0	162	31	15	15	36	1.90
47353274--47353419	74	2.0	74	84	0	193	30	15	16	37	1.89
47357478--47357647	41	4.2	40	72	18	143	22	21	27	28	1.99
47359272--47359377	48	2.2	48	100	0	212	28	17	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47359363--47359467	46	2.3	44	84	9	140	26	20	29	23	1.99
47359271--47359488	48	4.7	47	83	8	198	26	19	28	24	1.99
47366203--47366370	43	3.9	43	89	4	259	13	23	32	30	1.93
47366687--47366794	45	2.5	42	83	8	119	24	24	25	25	2.00
47368347--47368432	43	2.0	43	97	0	163	38	13	17	30	1.89
47376082--47376146	16	4.1	16	80	11	62	60	1	3	35	1.22
47376741--47376809	31	2.4	27	79	13	75	39	11	11	37	1.78
47378133--47378161	13	2.3	13	94	5	51	68	0	0	31	0.89
47378240--47378270	16	1.9	16	93	0	53	48	0	0	51	1.00
47379910--47379939	3	10.3	3	92	7	53	30	0	0	70	0.88
47392032--47392069	18	2.2	16	90	9	58	71	0	7	21	1.11
47392180--47392260	41	2.0	41	100	0	162	43	14	9	32	1.79
47394221--47394260	18	2.2	19	86	13	57	37	0	12	50	1.41
47394889--47394919	14	2.2	14	100	0	62	48	19	6	25	1.72
47396472--47396688	46	4.7	44	75	14	170	28	20	28	23	1.99
47399942--47400035	47	2.0	49	85	4	129	35	25	8	30	1.86
47405027--47405065	3	13.0	3	100	0	78	33	0	0	66	0.92
47418969--47419038	10	6.5	11	70	22	51	47	1	0	51	1.09
47418988--47419027	20	2.0	21	85	14	57	50	2	0	47	1.14
47418979--47419031	21	2.5	21	80	17	65	50	1	0	47	1.12
47420670--47420716	16	2.9	16	78	15	53	65	2	8	23	1.31
47421429--47421462	18	1.9	18	94	5	61	55	5	11	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47422177--47422223	16	2.9	16	78	15	53	65	2	8	23	1.31
47423683--47423729	16	2.9	16	78	15	53	65	2	8	23	1.31
47425425--47425462	20	1.9	20	94	0	67	68	0	2	28	1.03
47425400--47425487	33	2.7	33	80	15	85	70	1	4	23	1.13
47425447--47425498	24	2.2	24	86	3	70	76	0	7	15	0.99
47429187--47429233	16	2.9	16	78	15	53	65	2	8	23	1.31
47430958--47431003	15	3.2	15	76	17	53	60	2	6	30	1.34
47430972--47431020	21	2.3	21	85	0	71	65	2	4	28	1.22
47431005--47431060	28	2.1	26	87	9	78	78	0	8	12	0.96
47433987--47434020	18	1.9	18	94	5	61	55	5	11	26	1.58
47434737--47434783	16	2.9	16	78	15	53	65	2	8	23	1.31
47439730--47439901	61	2.8	60	82	10	199	53	2	1	42	1.23
47439767--47439895	58	2.2	57	80	11	156	54	3	0	41	1.21
47441663--47441706	17	2.6	17	96	0	79	38	15	18	27	1.91
47443693--47443738	19	2.4	19	77	0	56	63	2	4	30	1.26
47445313--47445347	16	2.2	16	95	5	63	45	22	5	25	1.74
47450881--47450922	15	2.6	16	82	17	52	30	2	0	66	1.04
47452220--47452274	24	2.3	23	76	11	58	54	0	1	43	1.10
47454781--47454807	7	3.9	7	100	0	54	74	11	0	14	1.08
47455133--47455179	20	2.3	20	85	7	60	59	2	8	29	1.39
47455123--47455170	20	2.6	18	75	18	53	64	2	6	27	1.28
47459846--47459939	46	2.0	47	85	2	127	29	22	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47462308--47462340	17	2.0	17	94	5	59	36	15	0	48	1.45
47462626--47463081	46	10.0	46	92	1	639	21	24	14	39	1.91
47465217--47465276	13	4.8	12	75	13	50	63	3	0	33	1.11
47469350--47469383	5	6.6	5	93	6	59	79	2	0	17	0.86
47469353--47469383	16	1.9	16	100	0	62	77	3	0	19	0.90
47472072--47472252	40	4.6	40	88	2	258	24	22	25	26	2.00
47472480--47472521	22	1.9	22	85	9	59	33	9	14	42	1.78
47473939--47473981	22	2.0	22	95	0	77	30	16	11	41	1.83
47489885--47489942	28	2.1	28	93	0	98	34	10	20	34	1.87
47493421--47493474	26	2.1	25	82	3	63	33	7	3	55	1.45
47498310--47498476	43	3.9	44	76	4	171	29	13	22	34	1.92
47504178--47504211	16	2.2	15	89	5	50	44	0	0	55	0.99
47504925--47504983	25	2.4	24	82	5	73	40	0	1	57	1.09
47507197--47507249	20	2.6	19	80	11	61	39	18	9	32	1.83
47507396--47507507	24	4.8	24	86	4	140	36	16	21	25	1.94
47507401--47507539	24	6.0	23	83	7	131	35	17	23	24	1.95
47507396--47507539	46	3.1	47	84	8	161	34	17	22	25	1.96
47513715--47513773	20	3.0	20	84	0	64	37	18	8	35	1.81
47513961--47514049	23	3.9	22	79	5	88	31	21	23	23	1.98
47513958--47514049	46	2.0	46	85	8	125	33	20	22	22	1.97
47516473--47516500	12	2.3	12	100	0	56	42	0	17	39	1.50
47519218--47519242	12	2.1	12	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47519929--47519953	12	2.1	12	100	0	50	68	8	0	24	1.16
47518675--47520799	711	3.0	711	99	0	4150	33	17	12	36	1.87
47520640--47520664	12	2.1	12	100	0	50	68	8	0	24	1.16
47526508--47526796	43	6.7	43	79	3	224	31	26	15	26	1.96
47527161--47527205	21	2.1	21	83	0	54	8	46	8	35	1.66
47528811--47528983	46	3.7	46	75	14	176	21	20	27	30	1.98
47528808--47528978	93	1.8	93	88	5	265	21	20	28	29	1.98
47535031--47535073	19	2.3	19	100	0	86	32	18	16	32	1.93
47549215--47549387	46	3.7	46	75	14	176	21	20	27	30	1.98
47549212--47549382	93	1.8	93	88	5	265	21	20	28	29	1.98
47556807--47556979	46	3.7	46	77	11	183	22	20	26	30	1.98
47556804--47556974	93	1.8	93	89	2	272	22	20	27	29	1.98
47558423--47558451	13	2.1	14	93	6	51	55	10	0	34	1.34
47564341--47564425	40	2.1	40	95	0	152	20	23	14	42	1.88
47564716--47564778	20	3.1	20	69	26	60	46	3	3	47	1.34
47564716--47564793	41	1.9	41	92	2	131	46	3	2	47	1.34
47566277--47566331	22	2.6	21	83	11	60	27	25	30	16	1.96
47570502--47570551	25	2.0	25	84	0	64	38	6	14	42	1.70
47576604--47577492	442	2.0	443	93	0	1528	37	9	18	33	1.84
47580216--47580303	35	2.5	35	81	5	106	35	21	18	25	1.95
47590420--47590466	20	2.3	20	100	0	94	36	10	19	34	1.86
47590515--47590586	25	2.9	24	85	6	99	27	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47590516--47590599	25	3.4	24	83	8	98	30	21	22	25	1.98
47590809--47590898	38	2.7	31	74	22	92	33	14	26	25	1.94
47591788--47591853	33	2.0	33	96	0	123	21	16	9	53	1.71
47598086--47598329	89	2.7	90	77	6	237	34	16	21	28	1.95
47599921--47599945	12	2.1	12	100	0	50	44	8	0	48	1.32
47600438--47600697	46	5.6	47	79	12	236	24	28	18	29	1.98
47600438--47600700	94	2.8	91	80	12	304	24	28	17	28	1.98
47605978--47606138	40	4.1	40	91	3	263	25	27	22	24	2.00
47605978--47606138	79	2.0	80	91	3	263	25	27	22	24	2.00
47610431--47610647	44	4.7	45	75	14	174	23	30	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316