genome.fa.s1.2.7.7.80.10.50.1000.278.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  278  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92118392--92118561	40	4.3	40	90	0	234	26	28	21	23	1.99
92126220--92126253	5	6.8	5	87	12	52	58	0	0	41	0.98
92129118--92129240	58	2.1	57	81	11	144	33	17	20	29	1.95
92137933--92137986	26	2.0	27	83	16	69	33	12	9	44	1.75
92142324--92142354	16	1.9	16	93	0	53	35	22	0	41	1.54
92142321--92142360	20	2.0	20	85	0	53	37	22	0	40	1.54
92142547--92142801	55	4.8	54	73	9	188	21	23	16	37	1.94
92146480--92146517	4	9.2	4	91	2	58	52	21	0	26	1.47
92146662--92146785	9	14.6	9	66	25	65	55	16	2	25	1.53
92146716--92146775	23	2.6	23	89	0	84	51	20	3	25	1.62
92146744--92146787	18	2.4	19	92	7	74	54	18	2	25	1.55
92146668--92146834	82	2.0	80	80	6	183	56	16	3	23	1.56
92155198--92155296	45	2.2	45	92	3	164	39	19	20	21	1.93
92155274--92155298	12	2.1	12	100	0	50	40	20	24	16	1.91
92156678--92156744	3	23.0	3	71	17	52	61	0	1	37	1.05
92156676--92156744	20	3.0	23	77	18	81	59	0	1	39	1.06
92157677--92157726	21	2.4	21	96	0	91	34	4	32	30	1.76
92164980--92165130	70	2.2	70	88	7	218	39	9	6	45	1.63
92165076--92165174	51	1.9	52	89	6	157	41	10	9	39	1.70
92171258--92171305	10	4.6	10	80	10	51	35	0	4	60	1.16
92202427--92202493	33	2.0	33	100	0	134	44	22	14	17	1.86
92205428--92205515	6	14.7	6	80	10	92	77	0	4	18	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92220908--92220948	21	2.0	21	95	0	73	31	21	19	26	1.97
92224299--92224344	6	7.5	6	82	2	56	15	6	0	78	0.95
92226781--92226887	44	2.4	44	87	1	142	29	24	14	31	1.94
92228698--92228823	65	1.9	65	100	0	252	29	15	15	40	1.87
92229068--92229094	13	2.1	13	100	0	54	14	33	37	14	1.88
92234831--92234864	14	2.4	14	85	0	50	32	26	26	14	1.95
92236259--92236288	2	15.0	2	100	0	60	50	50	0	0	1.00
92238102--92238160	30	2.0	30	89	0	91	32	13	25	28	1.94
92238491--92238707	46	4.7	46	79	12	212	27	19	29	23	1.98
92279177--92279306	47	2.8	47	89	2	190	32	28	16	23	1.96
92287012--92287063	18	2.9	18	91	0	68	44	3	3	48	1.39
92289838--92289864	2	13.5	2	100	0	54	48	0	0	51	1.00
92291765--92292029	69	3.8	69	81	4	300	35	20	22	21	1.96
92301325--92301436	56	2.0	56	100	0	224	30	12	16	41	1.85
92305656--92305681	3	8.7	3	100	0	52	34	30	34	0	1.58
92305683--92305725	6	7.0	6	84	5	50	48	48	0	2	1.14
92305876--92305930	24	2.3	24	78	15	60	45	10	38	5	1.63
92311152--92311177	2	13.0	2	100	0	52	0	50	0	50	1.00
92314472--92314539	34	2.0	34	100	0	136	38	20	5	35	1.77
92325741--92325775	17	2.1	17	100	0	70	17	28	14	40	1.88
92326387--92326431	21	2.1	21	100	0	90	44	4	13	37	1.64
92327927--92327991	32	2.0	32	100	0	130	30	6	24	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92334727--92334761	17	2.1	17	88	0	52	40	2	0	57	1.14
92334713--92334779	23	2.9	22	82	6	62	38	5	0	55	1.25
92334767--92334844	8	9.5	8	72	22	56	33	2	0	64	1.08
92334774--92334834	12	5.2	12	74	23	51	32	1	0	65	1.02
92334767--92334831	28	2.3	30	77	20	77	32	1	0	66	1.01
92334768--92334824	18	3.2	18	79	20	75	33	1	0	64	1.04
92334791--92334854	26	2.4	27	84	10	78	35	1	0	62	1.05
92340495--92340567	36	2.0	36	100	0	146	38	10	19	31	1.86
92343476--92343535	20	3.0	19	80	11	68	45	13	8	33	1.73
92349773--92349825	26	2.0	26	100	0	106	33	0	22	43	1.54
92350577--92350626	26	1.9	26	88	8	75	22	14	4	60	1.51
92353116--92353143	7	4.0	7	100	0	56	28	28	14	28	1.95
92355552--92355576	7	3.6	7	100	0	50	44	0	0	56	0.99
92363322--92363354	4	8.2	4	93	0	57	27	3	24	45	1.68
92365979--92366037	25	2.4	25	100	0	118	45	6	11	35	1.67
92374439--92374529	19	4.9	19	88	8	143	36	15	10	37	1.83
92374439--92374529	35	2.5	37	89	8	141	36	15	10	37	1.83
92374453--92374508	17	3.5	15	88	9	60	35	16	10	37	1.83
92376474--92376518	24	2.0	22	82	8	54	35	2	4	57	1.31
92396552--92396817	132	2.0	132	85	5	360	22	20	15	41	1.90
92397291--92397359	19	3.5	19	72	16	61	42	13	11	33	1.80
92399003--92399049	19	2.4	20	85	3	60	44	2	6	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92399003--92399049	10	4.8	10	79	12	53	44	2	6	46	1.40
92401505--92401560	26	2.2	26	83	6	69	60	5	0	33	1.19
92414809--92415094	90	3.2	90	83	3	360	28	6	13	51	1.66
92417740--92417852	53	2.1	53	86	1	154	32	7	3	55	1.46
92417703--92418276	112	4.8	115	76	15	492	31	7	1	59	1.35
92417857--92417958	30	3.3	29	67	22	82	34	5	0	58	1.29
92417792--92418311	64	8.6	63	77	12	455	30	7	1	59	1.36
92418016--92418091	25	3.1	24	76	16	84	32	2	1	63	1.17
92417872--92418313	176	2.5	180	86	6	598	30	7	1	59	1.34
92417703--92418235	240	2.2	241	85	6	686	32	7	1	58	1.35
92420482--92420561	39	2.1	39	97	0	151	37	5	10	47	1.59
92423618--92423662	14	3.2	14	81	9	56	64	4	4	26	1.32
92423667--92423707	19	2.2	19	86	8	57	73	7	4	14	1.22
92426547--92426614	29	2.3	29	82	5	84	27	29	13	29	1.94
92426721--92426788	29	2.3	29	87	5	93	26	29	14	29	1.95
92426890--92426968	29	2.7	30	82	13	110	30	30	13	25	1.94
92426436--92426937	174	2.9	174	98	0	950	30	24	14	30	1.95
92434853--92434920	29	2.3	29	82	5	84	27	29	13	29	1.94
92435027--92435094	29	2.3	29	87	5	93	26	29	14	29	1.95
92435196--92435274	29	2.7	30	82	13	110	30	30	13	25	1.94
92434742--92435243	174	2.9	174	98	0	959	30	24	14	30	1.95
92442640--92442957	49	6.5	49	87	2	388	28	13	23	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92442632--92442957	147	2.2	147	86	2	449	28	12	23	35	1.92
92444815--92444857	20	2.2	20	82	0	50	41	6	0	51	1.29
92446523--92446651	53	2.4	54	84	7	165	23	19	21	35	1.96
92448113--92448146	17	1.9	18	88	5	52	47	2	0	50	1.16
92455210--92455239	15	1.9	16	93	6	53	13	6	6	73	1.24
92463912--92463981	31	2.3	31	82	0	86	28	25	20	25	1.99
92463936--92464027	46	2.0	46	89	0	139	27	23	22	26	2.00
92463982--92464040	31	1.9	31	100	0	118	25	25	20	28	1.99
92464020--92464246	50	4.5	50	93	0	373	25	22	16	35	1.94
92470407--92470437	13	2.3	14	94	5	55	64	6	0	29	1.18
92470433--92470479	17	2.8	17	83	6	51	63	0	4	31	1.13
92470532--92470588	24	2.4	25	80	11	66	54	3	3	38	1.35
92470651--92470702	25	2.1	24	82	3	59	65	0	5	28	1.16
92472829--92472915	29	3.1	29	69	18	67	52	8	20	18	1.70
92474824--92474887	29	2.2	28	83	2	74	76	4	3	15	1.08
92474831--92474878	17	2.8	16	75	25	53	77	6	4	12	1.11
92478056--92478384	44	7.6	44	80	9	327	27	25	16	31	1.96
92478085--92478384	86	3.5	84	77	8	309	27	25	15	31	1.96
92478065--92478398	128	2.6	127	79	8	379	27	24	16	31	1.96
92478067--92478555	215	2.3	212	80	8	544	29	24	15	30	1.96
92478470--92478686	44	5.0	44	70	16	137	29	22	15	32	1.95
92478473--92478718	131	1.9	131	86	1	350	29	21	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92478075--92478700	171	3.7	169	77	10	573	28	24	15	31	1.96
92490090--92490139	24	2.1	23	82	10	57	26	0	16	58	1.38
92490827--92490879	17	3.2	17	78	2	54	58	1	7	32	1.37
92492565--92492601	4	9.5	4	94	5	67	75	0	0	24	0.80
92507014--92507042	6	4.8	6	100	0	58	68	0	13	17	1.20
92517938--92517965	14	2.0	14	100	0	56	64	0	7	28	1.20
92518044--92518262	60	3.6	61	87	4	320	51	3	10	34	1.53
92525455--92525493	20	2.0	20	100	0	78	20	20	15	43	1.88
92531522--92531587	33	2.0	33	100	0	132	21	24	15	39	1.91
92538100--92538159	17	3.5	17	74	21	63	65	0	1	33	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316