Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  99  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30691783--30691936
82
1.9
79
85
6
211
29
27
15
26
1.96
30705606--30705667
10
5.9
10
74
10
52
33
32
3
30
1.74
30705606--30705668
21
3.0
21
88
2
90
33
33
3
30
1.74
30705984--30706015
12
2.7
12
100
0
64
81
0
6
12
0.87
30706783--30706816
15
2.3
15
89
0
50
35
29
32
2
1.73
30710465--30710526
10
5.9
10
74
10
52
33
32
3
30
1.74
30710465--30710527
21
3.0
21
88
2
90
33
33
3
30
1.74
30711631--30711664
15
2.3
15
89
0
50
35
29
32
2
1.73
30715204--30715261
10
5.7
10
76
11
64
29
27
13
29
1.94
30715204--30715264
20
3.0
20
83
9
79
27
26
13
32
1.93
30716618--30716643
12
2.2
12
100
0
52
76
7
0
15
0.99
30716647--30716696
14
3.6
14
71
15
50
74
8
12
6
1.22
30716636--30716714
27
2.8
27
83
9
88
72
5
13
8
1.26
30717588--30717622
18
1.9
18
88
11
54
57
0
20
22
1.41
30719692--30719749
10
5.7
10
76
11
64
29
27
13
29
1.94
30719692--30719752
20
3.0
20
83
9
79
27
26
13
32
1.93
30722879--30722927
22
2.2
23
82
10
66
30
8
18
42
1.79
30723759--30723804
23
2.0
24
86
4
67
76
2
10
10
1.12
30732329--30732358
10
2.9
10
95
5
51
80
6
3
10
1.01
30733538--30733645
6
17.7
6
68
10
58
71
4
17
6
1.25
30733542--30733600
18
3.3
18
82
0
73
74
6
13
5
1.19
30733607--30733656
14
3.6
14
80
17
59
72
2
18
8
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30733606--30733667
27
2.3
27
86
10
83
67
1
19
11
1.29
30733649--30733680
12
2.7
12
95
0
55
59
0
21
18
1.38
30738231--30738273
17
2.6
16
82
10
50
6
18
2
72
1.19
30739231--30739271
14
3.1
14
82
10
59
4
4
7
82
0.93
30739237--30739278
22
1.9
22
85
0
57
4
7
4
83
0.91
30756906--30757077
40
4.3
40
88
2
213
26
27
20
25
1.99
30756908--30757130
40
5.6
39
82
5
207
26
27
21
25
1.99
30756906--30757130
80
2.8
79
80
7
231
26
27
20
25
1.99
30757062--30757139
40
1.9
41
82
10
97
26
28
20
24
1.99
30760059--30760217
24
6.5
24
71
7
115
32
31
12
23
1.92
30765337--30765393
30
1.9
30
88
0
87
28
22
8
40
1.84
30768714--30768891
27
6.6
27
84
3
205
29
28
15
26
1.96
30768735--30768890
82
1.9
81
88
3
233
29
28
15
26
1.96
30776786--30776963
27
6.6
27
84
3
205
29
28
15
26
1.96
30776807--30776962
82
1.9
81
88
3
233
29
28
15
26
1.96
30793017--30793055
18
2.3
16
82
8
51
53
0
5
41
1.23
30793942--30794097
43
3.6
42
71
13
111
26
17
27
28
1.97
30796593--30796634
22
1.9
22
95
0
75
28
38
9
23
1.86
30797784--30797988
43
4.9
41
75
14
184
27
25
20
26
1.99
30797784--30797988
85
2.4
84
90
3
320
27
25
20
26
1.99
30805717--30805817
34
3.0
34
77
1
105
26
20
24
27
1.99
30810531--30810693
43
3.8
43
81
7
172
33
24
18
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30830773--30830802
14
2.1
15
93
6
53
63
13
10
13
1.52
30842884--30842926
5
8.2
5
82
17
52
79
0
2
18
0.85
30842884--30842928
11
4.2
11
78
21
51
77
0
2
20
0.87
30848858--30849114
47
5.5
47
91
0
397
31
8
30
28
1.87
30849232--30849310
37
2.1
37
83
4
97
25
20
29
25
1.99
30859063--30859323
46
5.6
46
71
7
195
29
29
19
21
1.98
30859108--30859268
47
3.5
46
75
12
184
29
29
18
22
1.97
30859062--30859327
93
2.9
93
91
0
424
29
29
19
21
1.98
30860737--30860832
47
2.0
47
100
0
192
40
8
20
30
1.82
30864745--30864800
8
6.9
8
97
2
103
12
0
12
75
1.06
30867335--30867369
15
2.3
15
95
0
61
51
8
14
25
1.70
30868347--30868372
13
2.0
13
100
0
52
15
30
38
15
1.88
30871183--30871227
22
2.0
22
83
8
56
33
20
4
42
1.72
30872468--30872737
47
5.8
46
81
7
271
23
29
18
28
1.98
30872466--30872731
140
1.9
141
86
5
378
23
29
18
28
1.98
30876977--30877037
31
1.9
32
86
3
88
37
16
22
22
1.93
30877053--30877104
27
2.0
26
84
3
68
34
21
26
17
1.95
30880612--30880643
14
2.4
13
90
10
55
18
6
12
62
1.50
30886845--30887020
46
3.8
46
73
16
157
23
19
27
29
1.98
30886841--30887010
93
1.8
93
89
2
270
23
20
28
28
1.99
30894743--30894833
44
2.1
43
83
6
112
31
26
17
24
1.97
30896933--30897040
50
2.2
48
83
11
130
30
20
20
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30896933--30897040
25
4.4
25
79
6
105
30
20
20
28
1.97
30904628--30904691
31
2.1
31
87
0
92
23
21
17
37
1.94
30904900--30905008
25
4.4
25
86
7
134
27
22
22
28
1.99
30905056--30905121
20
3.3
20
91
8
109
34
19
9
36
1.84
30905064--30905119
5
11.6
5
78
14
64
37
21
5
35
1.76
30905056--30905127
9
7.4
10
76
14
71
36
19
8
36
1.82
30907082--30907239
43
3.7
42
72
12
135
25
16
25
32
1.96
30917738--30917765
12
2.3
12
100
0
56
35
50
7
7
1.57
30925173--30925238
28
2.3
29
81
2
71
31
24
3
40
1.70
30936098--30936134
6
6.0
6
93
3
56
78
0
5
16
0.93
30941042--30941113
36
2.0
36
94
0
126
58
16
12
12
1.63
30946559--30946613
29
1.9
29
85
3
76
20
18
40
21
1.92
30950112--30950201
47
1.9
47
95
0
162
22
30
18
28
1.97
30950256--30950427
46
3.7
46
80
4
193
25
27
18
28
1.98
30950256--30950427
94
1.8
92
82
4
220
25
27
18
28
1.98
30956603--30956669
33
2.0
33
100
0
134
29
26
14
28
1.96
30964470--30964496
13
2.1
13
100
0
54
48
7
7
37
1.59
30970596--30970645
21
2.3
21
80
13
57
32
4
2
62
1.25
30970810--30970863
25
2.2
25
83
12
67
33
1
0
64
1.04
30980165--30980434
28
9.6
28
72
8
183
29
13
28
28
1.94
30980164--30980434
84
3.2
84
81
3
321
29
13
28
28
1.94
30980487--30980548
32
1.9
32
96
0
115
38
11
24
25
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30983573--30983672
24
4.1
25
74
8
80
39
17
21
23
1.92
30984304--30984360
29
2.0
29
92
0
96
24
24
22
28
2.00
30985514--30985571
18
3.2
18
78
9
73
39
15
20
24
1.91
30985833--30985879
23
2.0
23
84
15
62
42
19
12
25
1.86
30985941--30986003
27
2.3
27
86
0
90
19
17
23
39
1.92
30987932--30987963
12
2.6
13
90
9
50
50
25
6
18
1.70
30988421--30988567
42
3.4
42
75
11
129
27
24
21
27
1.99
30988413--30988572
86
1.9
85
86
3
232
27
25
21
26
1.99
30988452--30988578
44
2.9
43
75
14
118
29
24
19
26
1.99
30994417--30994671
44
5.6
44
81
8
282
29
16
28
25
1.97
30994408--30994671
139
1.9
138
86
6
378
29
17
28
25
1.97
30994464--30994674
90
2.3
89
84
6
248
29
17
28
24
1.97
30994408--30994701
136
2.1
139
84
9
381
29
17
28
24
1.97
31002813--31002844
16
2.0
16
93
0
55
34
18
0
46
1.49
31003025--31003365
50
6.8
50
74
6
312
30
24
18
26
1.98
31003135--31003368
101
2.3
100
79
5
240
31
24
16
26
1.96
31003025--31003370
151
2.3
151
87
1
514
30
24
18
27
1.98
31020155--31020426
80
3.4
80
84
4
327
27
21
26
25
1.99
31020208--31020452
120
2.1
118
81
6
280
28
20
25
25
1.99
31020155--31020426
40
6.8
40
82
5
293
27
21
26
25
1.99
31022338--31022510
46
3.7
46
74
11
165
22
18
27
31
1.97
31022335--31022505
93
1.8
93
88
2
263
22
18
28
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31022735--31022772
19
2.0
20
85
15
53
36
0
23
39
1.55
31025294--31025455
48
3.4
48
85
0
207
28
22
20
27
1.99
31039633--31039695
22
2.8
22
95
2
108
23
46
6
23
1.75
31049185--31049213
12
2.5
12
94
5
51
37
6
17
37
1.76
31050718--31050850
56
2.4
56
90
0
212
27
12
24
35
1.91
31050718--31050879
56
2.9
55
83
7
184
27
12
25
34
1.92
31055738--31055768
7
4.4
7
91
0
53
19
51
0
29
1.47
31056695--31056719
7
3.6
7
100
0
50
44
12
0
44
1.41
31065584--31065621
17
2.1
19
85
9
53
42
2
15
39
1.61
31066413--31066641
56
4.1
56
85
2
273
26
14
24
34
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316