genome.fa.s1.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  205  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66769986--66770127	40	3.6	40	92	2	225	24	23	26	25	2.00
66773330--66773359	15	2.1	15	93	6	53	30	6	26	36	1.82
66775386--66775424	18	2.2	18	86	9	53	61	7	20	10	1.52
66777176--66777209	17	2.0	17	88	11	52	29	14	11	44	1.81
66780945--66780997	21	2.5	21	84	3	70	32	15	9	43	1.78
66784234--66784278	12	2.9	17	69	30	55	15	24	26	33	1.95
66793266--66793329	31	2.1	31	87	0	92	25	21	14	39	1.91
66793543--66793620	25	3.2	24	90	3	113	32	20	19	28	1.97
66793694--66793749	11	5.5	11	71	16	57	33	21	10	33	1.88
66793694--66793760	20	3.3	20	91	4	109	34	20	10	34	1.87
66799318--66799502	40	4.7	40	83	10	220	25	28	23	23	2.00
66799320--66799502	79	2.3	79	82	10	221	25	27	23	23	2.00
66817451--66817738	146	2.0	146	98	0	558	28	23	20	27	1.99
66829041--66829218	27	6.6	27	84	5	180	29	28	15	26	1.96
66829062--66829217	82	1.9	81	88	3	233	29	28	15	26	1.96
66829215--66830093	438	2.0	439	99	0	1733	30	22	11	35	1.89
66837662--66837812	27	5.6	27	86	3	169	30	29	15	24	1.96
66837662--66837812	55	2.8	54	85	2	187	30	29	15	24	1.96
66837809--66838679	436	2.0	434	99	0	1724	30	22	11	35	1.90
66849940--66849991	27	2.0	26	84	3	68	17	26	21	34	1.95
66852224--66852267	21	2.1	21	95	0	79	31	25	15	27	1.96
66854010--66854043	17	2.1	17	88	5	52	17	29	8	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66858777--66858890	43	2.7	43	83	5	149	28	21	26	23	1.99
66861229--66861406	99	1.8	99	85	8	260	23	30	19	27	1.98
66861376--66861500	46	2.7	45	86	6	162	22	31	19	27	1.98
66863675--66863712	18	2.1	18	95	0	67	42	47	2	7	1.46
66863689--66863713	13	1.9	13	100	0	50	40	48	0	12	1.40
66863743--66863780	20	1.9	20	88	0	58	73	7	0	18	1.06
66863798--66863856	9	6.6	9	80	7	66	30	11	16	40	1.85
66863798--66863856	18	3.3	18	81	9	75	30	11	16	40	1.85
66863797--66863856	27	2.2	27	87	0	84	31	11	16	40	1.85
66866643--66866723	40	2.0	41	90	2	128	34	24	12	28	1.92
66867772--66867836	18	3.6	18	95	0	112	26	36	21	15	1.93
66868999--66869358	200	1.8	200	88	1	551	32	18	12	36	1.88
66877997--66878113	50	2.3	50	82	2	137	22	27	20	29	1.98
66877998--66878092	25	3.8	25	81	5	111	20	27	21	31	1.97
66878004--66878127	25	5.0	24	72	13	72	23	25	20	29	1.99
66879519--66879691	46	3.7	46	80	11	210	21	20	27	29	1.98
66879516--66879686	93	1.8	93	93	2	299	21	21	28	28	1.98
66887102--66887274	46	3.7	46	80	10	217	21	21	27	28	1.99
66887099--66887269	93	1.8	93	94	0	306	21	21	28	28	1.99
66888659--66888724	30	2.0	34	83	13	86	37	10	18	33	1.85
66891278--66891326	26	2.0	24	88	8	71	63	6	0	30	1.19
66891297--66891355	21	2.8	21	78	12	59	69	8	0	22	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66903146--66903197	17	3.1	17	80	0	59	46	7	0	46	1.31
66903152--66903203	17	3.1	17	80	2	61	48	7	0	44	1.31
66906753--66906781	15	1.9	15	100	0	58	27	3	20	48	1.66
66908519--66908568	24	2.1	23	82	10	57	36	2	2	60	1.20
66908553--66908705	59	2.7	56	80	10	168	42	1	3	52	1.25
66909284--66909335	26	2.0	26	100	0	104	26	26	23	23	2.00
66912896--66913094	51	3.9	51	92	0	335	27	25	15	31	1.95
66913118--66913209	28	3.4	27	81	13	118	26	22	15	35	1.94
66915509--66915558	25	2.0	25	92	0	82	20	20	12	48	1.80
66917497--66917631	60	2.2	61	87	5	186	48	8	5	38	1.55
66934257--66934293	19	2.0	19	89	5	58	24	62	8	5	1.44
66936412--66936478	34	2.0	34	82	11	84	38	23	8	28	1.85
66936493--66936521	15	1.9	15	100	0	58	13	6	44	34	1.71
66937626--66937662	18	2.1	18	89	0	56	29	10	10	48	1.72
66939033--66939059	11	2.5	11	100	0	54	62	0	0	37	0.95
66939238--66939270	15	2.2	15	100	0	66	72	0	27	0	0.85
66940824--66940895	5	14.4	5	74	0	54	40	18	5	36	1.74
66940833--66940895	25	2.5	25	86	0	81	41	19	6	33	1.76
66941120--66941169	7	7.3	7	73	13	50	44	14	0	42	1.44
66943472--66943583	29	4.0	27	73	13	91	28	13	32	25	1.94
66947978--66948056	37	2.1	37	90	0	122	25	31	18	24	1.98
66948175--66948656	47	10.2	47	90	3	734	29	31	8	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66948175--66948656	96	5.1	94	89	3	725	29	31	8	30	1.87
66952042--66952445	40	10.0	40	77	11	186	24	28	21	26	1.99
66952064--66952153	45	2.0	45	97	0	171	28	30	20	21	1.98
66952192--66952604	40	10.3	41	85	6	546	23	27	20	28	1.99
66952950--66953028	29	2.7	29	86	5	106	27	32	15	24	1.95
66953010--66953155	43	3.4	43	97	0	274	28	34	15	21	1.94
66955009--66955088	37	2.2	37	83	0	106	28	31	16	23	1.96
66955207--66955688	47	10.2	47	90	3	734	29	31	8	31	1.87
66955207--66955688	96	5.1	94	89	3	725	29	31	8	31	1.87
66955425--66955498	22	3.3	22	65	10	60	29	31	9	29	1.89
66958345--66958408	19	3.3	20	65	14	53	40	3	7	48	1.48
66963934--66963964	12	2.6	12	94	0	53	6	29	41	22	1.78
66965469--66965498	15	2.0	15	100	0	60	33	6	0	60	1.23
66968741--66968898	24	6.6	24	64	7	79	25	12	27	34	1.92
66973958--66974050	34	2.8	34	83	4	100	33	24	23	18	1.97
66980053--66980214	24	6.8	24	66	6	87	26	13	26	33	1.94
66990574--66990739	46	3.6	46	78	13	196	21	20	29	28	1.98
66990569--66990740	93	1.8	93	93	0	299	20	20	29	29	1.98
66996217--66996288	34	2.2	33	87	7	101	30	18	23	27	1.97
67004772--67004841	27	2.6	27	90	2	106	42	27	15	14	1.86
67004772--67004850	27	3.0	27	88	1	97	41	24	13	20	1.88
67018319--67018557	119	2.0	119	93	0	406	54	10	11	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67018919--67018963	22	2.0	22	91	0	72	48	15	2	33	1.57
67023520--67023564	22	2.0	22	91	0	72	48	15	2	33	1.57
67024669--67025082	207	2.0	207	100	0	828	29	18	14	37	1.90
67028729--67028753	12	2.1	12	100	0	50	44	16	0	40	1.47
67032236--67032337	30	3.4	29	90	5	159	11	19	46	22	1.82
67065363--67065576	40	5.3	40	96	0	392	25	20	26	27	1.99
67065604--67065714	57	1.9	57	90	0	177	24	20	27	27	1.99
67065608--67065705	28	3.5	28	75	8	99	22	22	26	28	1.99
67065636--67065725	28	3.2	27	70	16	67	24	20	27	27	1.99
67069137--67069256	58	2.1	58	100	0	240	30	1	22	45	1.62
67070118--67070249	49	2.7	49	81	8	151	25	25	17	31	1.97
67073777--67073855	20	4.0	20	77	12	90	11	26	17	44	1.83
67078241--67078440	35	5.7	35	87	1	267	31	10	25	33	1.89
67078241--67078440	105	1.9	105	88	0	301	31	10	25	33	1.89
67085697--67085861	70	2.4	70	86	2	215	31	11	24	32	1.91
67085697--67085863	35	4.8	34	82	3	190	31	11	24	32	1.91
67087194--67087364	93	1.8	93	89	0	270	29	26	20	22	1.98
67087189--67087361	46	3.7	46	74	10	172	30	26	20	23	1.98
67089191--67089231	21	2.0	21	100	0	82	53	7	4	34	1.50
67094870--67095086	46	4.7	45	82	11	235	23	29	19	26	1.98
67094870--67095094	94	2.4	92	84	11	282	24	30	19	26	1.98
67111030--67111104	31	2.5	29	79	10	80	40	1	5	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67117056--67117101	24	1.9	24	82	8	58	23	13	17	45	1.83
67121051--67121261	40	5.3	40	89	4	239	23	20	27	28	1.99
67131593--67131681	24	3.8	23	75	10	83	31	12	25	30	1.92
67137589--67137642	25	2.2	25	82	0	63	25	20	18	35	1.95
67148164--67148223	25	2.4	25	88	0	75	31	25	11	31	1.91
67148216--67148272	25	2.3	25	81	3	62	29	22	21	26	1.99
67150643--67150749	20	5.8	18	70	22	62	53	2	2	41	1.30
67150638--67150736	17	5.8	17	68	21	64	53	4	3	39	1.35
67166303--67166477	46	3.8	46	80	15	207	28	29	20	21	1.98
67166311--67166481	93	1.8	93	93	0	297	28	29	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316