genome.fa.s1.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  175  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56318645--56318868	95	2.3	95	84	5	283	23	30	18	27	1.98
56318541--56318874	144	2.3	144	86	6	453	24	29	18	26	1.98
56328739--56328788	20	2.7	18	77	22	59	50	2	2	46	1.24
56330248--56330287	21	2.0	20	90	5	62	17	27	35	20	1.95
56338439--56338463	13	1.9	13	100	0	50	88	4	8	0	0.64
56339540--56339801	39	6.7	40	87	7	337	25	22	27	24	2.00
56347559--56347820	39	6.7	40	87	7	337	25	22	27	24	2.00
56360244--56360298	8	6.9	8	78	0	65	41	21	23	12	1.88
56360244--56360306	16	3.9	16	87	0	81	42	20	23	12	1.86
56360240--56360298	24	2.5	24	85	0	73	45	20	22	11	1.83
56360240--56360306	8	8.4	8	77	0	62	46	19	22	11	1.82
56360530--56360635	29	3.7	29	96	2	187	26	17	28	27	1.98
56360530--56360660	29	4.6	28	87	8	151	26	17	29	26	1.98
56360944--56360997	27	2.0	27	85	3	74	46	24	16	12	1.82
56373070--56373121	24	2.0	28	85	14	76	36	5	11	46	1.64
56374166--56374197	15	2.0	17	88	11	50	25	0	31	43	1.55
56375505--56375553	22	2.2	22	85	7	64	20	6	0	73	1.04
56375520--56375544	13	1.9	13	100	0	50	16	8	0	76	1.02
56377203--56377247	6	7.2	6	81	18	56	15	0	4	80	0.87
56378771--56378878	43	2.5	43	87	3	146	32	24	17	25	1.97
56382147--56382292	37	3.9	37	94	0	238	26	30	19	24	1.98
56382455--56382687	47	5.0	47	94	0	385	26	28	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56395331--56395510	49	3.8	47	72	22	153	28	19	28	23	1.98
56402915--56403228	46	6.6	46	73	13	176	26	19	31	22	1.98
56406147--56406187	19	2.0	21	86	9	59	29	36	0	34	1.58
56406814--56406886	34	2.1	34	89	0	110	28	23	21	26	1.99
56415803--56415863	24	2.5	24	86	5	79	19	16	29	34	1.94
56418292--56418343	27	1.9	27	84	7	70	36	15	15	32	1.89
56431126--56431238	43	2.7	41	79	5	127	27	24	15	31	1.96
56432224--56432268	20	2.2	20	88	0	63	35	13	2	48	1.54
56433352--56433398	18	2.7	18	90	3	69	12	42	29	14	1.83
56440451--56440489	18	2.2	18	85	0	51	12	33	35	17	1.88
56445412--56445464	13	4.0	13	72	13	54	58	1	0	39	1.09
56445621--56446019	90	4.4	90	89	4	618	30	10	10	49	1.69
56445634--56445999	187	2.0	186	94	0	642	30	10	10	48	1.70
56449517--56449543	13	2.1	13	100	0	54	14	18	22	44	1.86
56453797--56453830	17	2.0	17	88	11	52	52	11	17	17	1.73
56453797--56453831	18	2.0	17	88	5	52	54	11	17	17	1.71
56455594--56455766	46	3.7	46	76	10	181	30	26	20	23	1.98
56455599--56455769	93	1.8	93	89	0	270	29	27	20	22	1.99
56460448--56460569	47	2.6	48	85	6	153	29	14	28	27	1.95
56480633--56480694	31	2.1	30	82	17	76	30	17	8	43	1.78
56480845--56480929	25	3.4	25	78	12	77	30	18	22	28	1.97
56488013--56488054	12	3.5	12	83	0	57	19	28	4	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56491720--56491790	24	3.0	24	95	0	124	35	1	38	25	1.65
56491720--56491813	48	1.9	48	81	10	111	35	4	37	23	1.75
56492973--56493083	27	4.1	27	88	5	154	16	24	21	37	1.93
56498356--56498522	39	4.3	38	83	3	199	21	26	19	32	1.97
56506388--56506552	39	4.2	38	87	2	213	22	26	20	31	1.98
56514449--56514500	26	2.0	26	96	0	95	34	21	11	32	1.89
56515645--56515822	42	4.3	42	86	2	216	22	19	21	35	1.96
56515645--56515822	82	2.1	83	83	2	214	22	19	21	35	1.96
56520914--56521140	48	4.7	48	88	2	305	24	17	30	27	1.97
56528356--56528553	51	3.9	51	92	1	326	28	24	13	32	1.94
56528578--56528676	28	3.7	27	82	13	132	25	25	14	35	1.93
56538434--56538490	3	19.0	3	96	0	96	29	0	3	66	1.08
56551484--56551538	8	7.1	8	82	12	53	70	3	1	23	1.12
56551486--56551528	21	2.0	23	86	9	63	72	2	2	23	1.08
56552934--56552982	20	2.5	19	80	9	53	51	8	6	34	1.57
56561041--56561225	40	4.7	40	76	9	155	24	20	27	27	1.99
56561041--56561223	79	2.3	81	83	4	221	24	20	27	27	1.99
56561041--56561258	79	2.8	80	79	4	192	25	20	27	26	1.99
56568906--56569090	40	4.7	40	76	9	155	24	20	27	27	1.99
56568906--56569088	79	2.3	81	83	4	221	24	20	27	27	1.99
56568906--56569123	79	2.8	80	79	4	192	25	20	27	26	1.99
56575288--56575506	93	2.3	95	80	4	228	25	28	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56575284--56575553	49	5.7	49	78	6	196	25	28	19	27	1.99
56575526--56575645	46	2.6	45	84	7	154	21	29	20	28	1.98
56577763--56577836	28	2.6	28	95	0	130	33	22	12	31	1.91
56577823--56577916	28	3.4	28	73	7	84	34	23	10	31	1.89
56577941--56578012	22	3.2	22	69	7	63	30	30	12	26	1.93
56577935--56578005	24	3.0	24	66	13	58	30	29	15	23	1.95
56578070--56578220	57	2.6	57	91	1	230	35	28	9	26	1.88
56588099--56588166	35	1.9	36	93	3	120	26	19	16	38	1.92
56588597--56588674	28	2.8	28	76	1	86	29	26	14	29	1.95
56588694--56588760	28	2.4	28	73	14	66	25	16	13	44	1.84
56592388--56592780	50	7.8	50	78	3	349	25	16	26	31	1.97
56592537--56592812	150	1.8	150	81	3	340	25	16	27	30	1.97
56598560--56598591	3	10.7	3	93	0	55	0	65	34	0	0.93
56599560--56599602	22	2.0	22	95	0	77	60	6	0	32	1.23
56601241--56601317	25	3.1	24	73	17	68	70	0	3	25	1.05
56601263--56601302	16	2.5	17	80	12	57	80	0	2	17	0.83
56601613--56601676	26	2.5	26	78	19	71	26	1	7	64	1.30
56605193--56605221	5	5.8	5	100	0	58	82	0	0	17	0.66
56605582--56605646	35	1.9	33	84	6	85	38	3	3	55	1.31
56605631--56605681	26	2.0	26	88	3	77	31	0	7	60	1.25
56609254--56609294	21	2.0	21	90	0	64	29	21	29	19	1.98
56612649--56612712	33	2.0	32	81	9	76	46	14	6	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56616577--56616759	79	2.3	81	84	7	232	25	27	22	24	2.00
56616556--56616759	40	5.1	40	82	8	238	25	27	22	24	2.00
56635694--56635722	14	2.0	15	93	6	51	27	0	20	51	1.47
56636802--56637020	45	5.0	45	82	6	236	22	16	26	34	1.95
56643646--56643731	45	1.9	45	92	0	145	25	13	24	36	1.93
56648768--56648951	40	4.7	40	82	8	209	26	22	26	25	2.00
56648820--56648984	79	2.1	79	82	8	194	26	21	27	24	1.99
56656715--56656976	39	6.7	40	87	7	337	25	22	27	24	2.00
56661706--56661823	43	2.7	43	80	0	137	26	15	24	33	1.95
56665254--56665313	27	2.3	26	85	2	75	35	20	23	21	1.96
56665281--56665422	67	2.1	67	82	5	167	30	20	27	21	1.98
56668881--56668913	18	1.9	17	88	11	50	30	15	12	42	1.83
56673785--56673851	33	2.0	33	94	0	116	25	20	11	41	1.87
56676540--56676591	27	2.0	26	84	3	68	36	19	26	17	1.94
56676844--56676891	19	2.5	19	96	0	87	6	35	27	31	1.82
56680645--56680812	43	4.0	43	79	4	162	33	24	13	28	1.93
56684191--56684288	39	2.5	40	86	1	135	18	29	17	34	1.94
56687882--56687920	20	2.0	20	85	10	53	20	5	2	71	1.17
56692093--56692226	27	5.0	27	79	0	142	26	13	17	41	1.87
56692093--56692228	54	2.5	54	87	0	182	27	13	17	41	1.86
56694141--56694297	78	2.0	78	100	0	314	28	24	22	24	1.99
56701317--56701356	21	1.9	21	85	10	55	27	5	7	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56703007--56703074	34	2.0	34	88	0	100	30	23	20	25	1.98
56705849--56705923	39	1.9	39	86	0	105	32	2	29	36	1.72
56708660--56708835	96	1.8	96	88	0	271	34	19	13	33	1.90
56711098--56711254	47	3.4	46	80	4	145	43	12	10	33	1.77
56715425--56715529	28	3.8	27	74	13	97	28	16	29	25	1.97
56721434--56721465	16	2.0	16	93	0	55	50	34	6	9	1.60
56722942--56723053	28	4.0	28	77	6	111	26	16	31	25	1.96
56722941--56723050	56	1.9	57	83	8	145	27	16	31	24	1.96
56728066--56728181	52	2.2	52	95	0	205	34	14	24	26	1.94
56728066--56728181	24	4.4	27	82	15	154	34	14	24	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316