genome.fa.s1.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  167  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53186861--53187088	40	5.7	40	97	0	420	21	26	20	31	1.98
53195508--53195655	40	3.7	40	97	0	269	21	27	20	31	1.98
53203054--53203112	30	2.0	30	100	0	118	25	6	16	50	1.70
53208662--53208690	14	2.1	14	100	0	58	55	13	6	24	1.63
53211946--53212035	28	3.2	28	84	12	130	27	31	11	30	1.91
53215559--53215617	16	3.7	16	90	0	91	49	13	22	15	1.79
53215559--53215617	8	7.4	8	75	7	57	49	13	22	15	1.79
53215714--53215750	19	1.9	19	94	0	65	35	13	32	18	1.90
53215829--53215945	28	4.1	30	78	12	115	26	13	32	27	1.94
53215836--53215946	57	1.9	57	92	0	186	24	14	35	26	1.94
53219708--53219935	40	5.7	40	97	0	420	31	20	26	21	1.98
53224088--53224124	19	1.9	19	94	0	65	35	18	35	10	1.86
53224214--53224348	29	4.7	29	84	8	172	25	15	34	24	1.95
53224214--53224348	57	2.4	58	85	9	172	25	15	34	24	1.95
53229541--53229713	46	3.8	45	78	10	188	21	18	30	30	1.97
53229534--53229705	93	1.8	93	93	0	299	20	19	30	29	1.97
53235345--53235398	24	2.2	24	84	12	67	29	37	16	16	1.91
53242207--53242431	40	5.7	40	82	6	224	25	27	21	25	1.99
53250001--53250225	40	5.7	40	82	6	224	25	27	21	25	1.99
53254073--53254126	24	2.2	24	84	12	67	29	37	16	16	1.91
53260860--53260921	32	2.0	31	87	3	88	58	6	19	16	1.59
53261552--53261591	21	2.0	20	90	5	62	35	0	22	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53261557--53261599	21	2.1	21	83	12	54	32	2	20	44	1.65
53278355--53278476	43	2.9	42	81	7	156	30	14	25	29	1.95
53284018--53284059	20	2.0	21	82	13	52	33	2	21	42	1.66
53301932--53302022	40	2.3	40	84	0	119	27	17	23	31	1.97
53301951--53302080	41	3.2	41	80	5	115	28	19	21	30	1.97
53307976--53308145	44	3.9	44	75	8	161	31	26	15	27	1.96
53310137--53310312	46	3.8	46	75	12	189	19	19	29	30	1.97
53310134--53310305	93	1.8	93	92	0	290	20	20	29	29	1.97
53313292--53313357	34	1.9	34	81	0	78	28	21	22	27	1.99
53319408--53319633	40	5.7	40	87	4	271	26	21	26	25	2.00
53327198--53327423	40	5.7	40	85	6	273	26	22	26	24	2.00
53343049--53343254	40	5.2	40	85	5	249	27	25	19	27	1.99
53343075--53343307	40	5.8	40	86	4	258	26	27	20	26	1.99
53350913--53351138	40	5.7	40	85	4	235	26	26	20	25	1.99
53359151--53359230	39	2.1	39	97	0	151	28	15	25	31	1.95
53365326--53365368	19	2.3	19	80	15	54	16	25	37	20	1.93
53365985--53366038	28	1.9	28	88	0	81	27	22	24	25	2.00
53366014--53366077	33	1.9	33	90	0	101	28	18	26	26	1.98
53373692--53373771	28	2.9	29	72	12	78	17	20	21	41	1.91
53373933--53374002	33	2.1	34	94	2	124	27	22	27	22	1.99
53374862--53374891	16	1.9	15	93	6	51	33	23	0	43	1.54
53375092--53375375	49	5.7	49	75	5	230	29	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53378390--53378440	20	2.3	23	80	12	63	31	7	13	47	1.72
53382136--53382182	20	2.4	21	82	10	64	65	10	6	17	1.43
53384409--53384585	81	2.2	81	96	1	327	27	10	26	35	1.89
53396814--53396956	43	3.3	43	79	5	146	30	23	14	31	1.94
53399570--53399594	13	1.9	13	100	0	50	24	24	20	32	1.98
53405308--53405341	8	4.2	8	92	0	50	82	0	0	17	0.67
53410142--53410181	21	1.9	21	100	0	80	55	5	7	32	1.50
53410269--53410300	17	2.0	17	88	11	50	31	3	3	62	1.26
53422549--53422812	39	6.8	39	91	0	429	30	28	21	19	1.97
53426151--53426407	55	4.8	54	74	14	196	36	17	24	21	1.94
53430046--53430407	45	7.7	45	75	13	336	25	17	29	26	1.98
53430031--53430506	95	5.0	95	86	3	611	26	17	30	25	1.97
53436617--53436662	23	2.0	24	87	12	69	32	15	2	50	1.56
53436867--53436967	42	2.3	44	81	3	116	34	26	16	21	1.95
53436867--53436982	44	2.7	42	82	2	124	32	25	18	23	1.97
53440613--53440891	50	5.5	50	79	5	301	26	17	26	30	1.97
53440660--53440841	101	1.8	101	90	0	292	27	19	24	28	1.99
53440613--53440905	151	1.9	152	90	1	471	26	18	25	29	1.98
53442011--53442275	133	2.0	132	94	0	467	26	12	19	41	1.87
53442985--53443156	43	4.0	43	72	15	149	23	18	26	31	1.97
53443268--53443340	33	2.2	33	97	2	137	31	8	23	36	1.84
53457005--53457044	19	2.1	19	85	0	53	65	7	20	7	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53457338--53457468	65	2.0	65	98	0	253	27	23	10	38	1.88
53458057--53458164	51	2.1	51	84	6	148	45	15	6	32	1.72
53458134--53458166	17	1.9	17	93	0	57	51	15	6	27	1.66
53463244--53463288	23	2.0	21	84	16	56	40	6	0	53	1.27
53463217--53463287	31	2.3	31	83	13	85	40	5	0	53	1.24
53465219--53465292	28	2.6	28	89	8	123	27	35	13	24	1.93
53488416--53488617	47	4.3	47	83	2	217	32	27	15	24	1.95
53488689--53488725	18	2.1	18	100	0	74	21	24	10	43	1.84
53489208--53489238	16	1.9	16	93	0	53	54	16	0	29	1.42
53491855--53491887	16	2.1	16	88	11	50	42	6	0	51	1.26
53492153--53492183	5	6.2	5	100	0	62	19	0	0	80	0.71
53498894--53498939	22	2.1	22	88	11	69	32	0	2	65	1.05
53498963--53499002	21	2.0	20	90	5	62	42	0	2	55	1.13
53498912--53499070	61	2.6	59	82	4	185	43	0	3	52	1.24
53499241--53499288	16	3.0	16	81	0	60	27	20	4	47	1.68
53499243--53499312	32	2.2	32	87	5	106	31	24	2	41	1.69
53502953--53502990	14	2.7	15	88	8	53	23	21	5	50	1.69
53508105--53508661	189	3.0	186	79	6	611	33	19	20	27	1.96
53510465--53510541	27	2.9	25	78	21	77	31	6	2	59	1.36
53510739--53510862	46	2.7	47	75	10	121	25	4	8	62	1.41
53515188--53515257	34	2.1	34	100	0	140	52	24	2	20	1.59
53516220--53516259	21	1.9	21	100	0	80	30	35	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53521037--53521071	17	2.0	18	88	5	54	14	31	0	54	1.40
53524006--53524159	28	5.5	28	95	0	256	33	27	12	26	1.92
53524006--53524184	56	3.2	56	89	1	261	33	27	12	26	1.92
53532229--53532378	28	5.6	27	91	5	232	32	28	12	26	1.93
53532229--53532378	55	2.8	55	91	3	234	32	28	12	26	1.93
53548653--53548681	13	2.2	13	100	0	58	55	13	0	31	1.39
53557996--53558039	22	2.0	22	90	0	70	75	2	2	20	1.03
53560725--53560811	40	2.2	41	81	6	106	31	21	17	29	1.96
53560764--53560849	34	2.5	34	83	3	102	32	20	19	26	1.97
53567512--53567564	23	2.3	24	78	12	58	60	0	30	9	1.28
53569187--53569356	41	4.2	40	72	18	143	27	27	22	23	1.99
53575248--53575374	40	3.2	39	89	4	191	29	26	19	24	1.99
53575358--53575391	17	2.0	17	94	0	59	38	29	14	17	1.90
53575318--53575431	57	2.0	57	98	0	219	30	28	18	22	1.97
53575375--53575476	39	2.6	40	92	1	161	26	28	20	24	1.99
53582630--53582893	40	6.7	40	87	5	333	26	26	21	25	1.99
53588113--53588274	41	3.9	40	68	20	109	28	26	21	23	1.99
53588151--53588254	42	2.5	40	80	10	111	26	25	21	25	1.99
53590532--53590580	10	4.7	10	85	9	53	61	6	0	32	1.21
53590543--53590586	22	2.0	22	90	0	70	56	4	0	38	1.20
53593465--53593515	25	1.9	27	84	11	70	19	13	13	52	1.73
53595853--53596041	49	3.9	49	81	2	211	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53595876--53596262	48	8.3	48	74	9	196	27	19	26	25	1.99
53596105--53596262	42	3.6	42	77	14	140	28	20	26	24	1.99
53596057--53596271	90	2.4	90	81	3	236	27	19	25	27	1.98
53604569--53604611	18	2.3	20	80	15	56	41	6	2	48	1.43
53607070--53607112	22	1.9	23	86	13	63	44	4	4	46	1.45
53615740--53615779	20	2.0	20	90	0	62	35	10	2	52	1.48
53618277--53618535	27	9.6	27	89	0	338	32	15	16	36	1.90
53618276--53618535	81	3.2	81	89	0	385	32	15	16	36	1.90
53618276--53618565	81	3.6	81	82	7	243	33	15	16	34	1.90
53618531--53618646	27	4.3	27	78	4	99	42	14	18	24	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316