genome.fa.s1.2.7.7.80.10.50.1000.305.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  305  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100315325--100315405	27	2.9	27	81	17	94	20	32	23	23	1.98
100315325--100315413	29	3.1	28	82	6	108	22	32	22	22	1.98
100315331--100315435	29	3.7	29	82	5	106	19	30	26	23	1.98
100317460--100317491	15	2.1	15	94	0	55	84	0	0	15	0.63
100319280--100319438	45	3.7	44	77	9	132	27	20	22	30	1.98
100319557--100319690	52	2.6	51	86	4	178	30	17	16	35	1.92
100319328--100319633	141	2.2	137	81	9	343	28	20	18	32	1.96
100325703--100325800	49	2.0	49	95	0	178	39	19	7	33	1.79
100329481--100329593	55	2.1	55	86	3	156	18	25	21	34	1.96
100331462--100331633	18	9.6	18	74	14	133	35	16	13	34	1.87
100331382--100331645	18	14.3	18	70	11	122	35	15	13	35	1.86
100331809--100331833	6	4.2	6	100	0	50	52	16	16	16	1.76
100332712--100332880	27	6.3	27	81	1	187	43	23	5	27	1.75
100332725--100332907	54	3.4	53	80	3	206	43	21	6	29	1.76
100332729--100332880	81	1.9	81	84	2	207	44	23	4	27	1.72
100332728--100332910	27	6.8	27	79	7	158	43	21	5	29	1.75
100332725--100332907	81	2.3	81	79	5	192	43	21	6	29	1.76
100332893--100332979	27	3.2	26	84	12	113	37	17	19	25	1.93
100333375--100333474	6	16.3	6	75	15	89	20	17	14	49	1.80
100333375--100333490	37	3.2	37	82	3	137	19	16	13	50	1.78
100334114--100334248	45	3.0	44	94	2	225	40	22	18	19	1.92
100334644--100334693	15	3.2	16	75	13	52	38	22	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100335055--100335115	21	2.9	21	79	13	63	47	18	0	34	1.49
100355043--100355142	29	3.4	29	72	10	105	29	31	18	22	1.97
100355006--100355174	58	2.9	58	97	0	313	28	28	19	23	1.98
100355015--100355171	29	5.5	28	69	12	104	29	27	20	22	1.99
100355340--100355461	43	2.8	43	89	0	199	32	32	22	12	1.91
100358081--100358204	26	4.8	26	89	3	180	29	21	20	27	1.98
100358254--100358320	20	3.3	21	87	8	88	34	19	10	35	1.86
100358356--100358403	25	1.9	25	82	0	60	25	18	25	31	1.98
100358826--100358853	8	3.5	8	100	0	56	14	21	21	42	1.88
100359701--100359735	15	2.4	15	90	4	54	82	0	17	0	0.66
100365931--100366001	25	2.8	25	84	2	88	28	25	19	26	1.99
100366059--100366107	9	5.0	9	79	16	53	38	20	8	32	1.82
100366051--100366117	20	3.3	20	91	4	109	35	19	10	34	1.86
100366051--100366106	11	5.5	11	73	16	57	35	19	10	33	1.87
100366153--100366200	25	1.9	25	82	0	60	29	18	20	31	1.97
100366623--100366650	8	3.5	8	100	0	56	14	21	21	42	1.88
100367499--100367533	16	2.2	16	90	5	54	85	0	14	0	0.59
100388849--100388936	35	2.6	34	87	7	126	30	4	3	61	1.32
100389033--100389072	20	1.9	20	85	10	53	40	5	0	55	1.22
100391087--100391152	29	2.2	29	83	2	78	43	10	9	36	1.71
100392809--100392883	36	2.1	36	92	0	123	44	8	20	28	1.79
100407107--100407155	24	2.0	25	92	4	82	36	14	12	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100409423--100409460	19	2.0	20	85	10	53	34	18	13	34	1.89
100410736--100410774	17	2.2	18	86	4	53	53	0	2	43	1.14
100416479--100416536	30	1.9	30	82	6	73	17	24	32	25	1.96
100419308--100419368	30	2.0	30	84	6	79	62	3	1	32	1.21
100419324--100419359	16	2.2	16	95	0	63	66	0	2	30	1.06
100419450--100419503	25	2.2	25	80	9	67	46	0	7	46	1.31
100422653--100422695	18	2.4	18	96	0	77	51	0	2	46	1.13
100422715--100422753	19	2.1	19	100	0	78	38	25	10	25	1.87
100422793--100422835	19	2.2	20	95	4	79	48	9	11	30	1.71
100442153--100442205	26	2.0	26	96	0	97	56	7	9	26	1.57
100442430--100442482	20	2.7	20	90	0	79	13	32	35	18	1.90
100458804--100458861	30	1.9	30	82	6	73	17	24	32	25	1.96
100461634--100461694	30	2.0	30	84	6	79	62	3	1	32	1.21
100461650--100461685	16	2.2	16	95	0	63	66	0	2	30	1.06
100461775--100461827	24	2.2	24	80	6	63	47	0	7	45	1.31
100464984--100465026	18	2.4	18	96	0	77	51	0	2	46	1.13
100465105--100465147	19	2.2	20	95	4	79	48	9	11	30	1.71
100481573--100481598	9	2.9	9	100	0	52	11	19	23	46	1.82
100485139--100485191	26	2.0	26	96	0	97	56	7	9	26	1.57
100485416--100485468	20	2.7	20	90	0	79	13	32	35	18	1.90
100487291--100487327	17	2.2	16	90	4	56	0	29	0	70	0.88
100500945--100500993	20	2.5	20	89	0	71	12	28	38	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100519838--100519881	22	2.0	22	95	0	79	38	31	15	13	1.87
100532138--100532489	131	2.7	131	81	4	318	36	17	19	27	1.94
100532258--100532537	131	2.1	130	84	3	364	35	17	18	28	1.93
100535453--100535487	17	2.0	18	88	5	54	14	2	5	77	1.07
100535816--100536248	132	3.3	130	82	5	519	28	24	19	27	1.98
100536318--100536438	64	1.9	64	87	3	181	34	14	19	31	1.92
100544475--100544529	26	2.1	26	81	15	69	14	16	0	69	1.20
100550299--100550325	14	1.9	14	100	0	54	37	7	11	44	1.68
100551210--100551238	12	2.3	13	94	5	51	34	10	0	55	1.34
100562229--100562258	15	1.9	16	93	6	53	26	26	20	26	1.99
100562511--100562567	24	2.5	22	81	15	71	29	21	17	31	1.96
100564082--100564124	16	2.4	18	88	11	63	32	6	0	60	1.23
100564085--100564124	19	2.1	19	90	9	64	32	5	0	62	1.17
100564249--100564305	29	2.0	29	82	6	71	38	5	3	52	1.41
100564659--100564714	14	4.1	14	75	15	64	35	5	1	57	1.32
100564669--100564764	26	3.7	26	81	18	112	37	3	3	56	1.31
100564709--100564789	11	7.5	11	70	13	53	35	1	3	59	1.23
100564660--100564788	13	9.9	13	71	18	74	36	3	3	57	1.30
100564669--100564790	24	5.3	23	72	22	89	36	2	3	58	1.28
100564718--100564780	17	3.7	18	72	18	53	36	1	1	60	1.16
100577164--100577470	164	1.9	161	88	4	465	26	16	21	35	1.94
100577313--100577556	85	2.8	85	87	6	332	25	16	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100579214--100579250	16	2.3	16	90	0	56	32	0	0	67	0.91
100579748--100579803	14	4.1	14	75	15	64	35	5	1	57	1.32
100579758--100579853	26	3.5	27	82	17	110	38	3	3	55	1.32
100579807--100579873	15	4.3	16	74	12	68	37	1	1	59	1.16
100579798--100579885	41	2.1	42	79	6	99	36	1	3	59	1.22
100579837--100579874	14	2.7	14	80	11	51	34	0	0	65	0.93
100579807--100579876	19	3.6	19	71	17	54	37	1	1	60	1.15
100579772--100579882	9	11.8	9	69	17	57	36	1	3	57	1.27
100581983--100582022	6	6.7	6	91	8	64	35	0	0	65	0.93
100582701--100582755	17	2.9	19	73	15	60	38	1	0	60	1.08
100585517--100585637	50	2.4	51	88	2	181	38	15	21	24	1.93
100585621--100585707	31	2.8	31	89	0	138	27	20	27	24	1.99
100585807--100585905	49	2.0	48	94	5	173	26	16	26	31	1.96
100587781--100587851	25	3.0	25	72	22	64	46	1	1	50	1.18
100591830--100591886	24	2.4	24	75	19	64	63	5	3	28	1.33
100591838--100591875	15	2.5	16	79	12	53	63	7	0	28	1.23
100591842--100591875	8	4.5	8	89	10	54	61	8	0	29	1.26
100591837--100591882	16	2.9	16	80	9	58	63	6	2	28	1.31
100592000--100592055	20	2.8	21	73	13	64	55	5	7	32	1.50
100592034--100592098	25	2.8	24	83	6	80	52	6	7	33	1.55
100592117--100592250	25	5.6	25	70	11	84	58	2	3	35	1.31
100592729--100592903	30	5.8	30	93	0	296	22	3	49	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100592729--100592903	60	2.9	60	98	0	332	22	3	49	25	1.65
100593611--100593817	77	2.7	75	89	6	303	32	20	16	30	1.94
100593731--100593906	89	2.0	89	85	6	241	35	19	18	26	1.95
100593820--100593981	73	2.2	74	88	2	245	35	22	17	24	1.95
100593961--100593995	14	2.5	14	95	0	61	60	8	14	17	1.58
100593650--100594142	162	3.0	160	86	4	641	35	21	16	26	1.94
100593888--100594051	89	1.9	87	84	7	224	35	22	16	25	1.95
100594015--100594214	73	2.8	71	83	2	256	34	21	13	32	1.91
100594206--100594347	72	2.0	73	90	1	223	38	23	15	22	1.92
100594072--100594361	160	1.8	157	83	6	388	34	22	15	27	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316