genome.fa.s1.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  158  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50132505--50132537	16	2.0	17	88	5	50	45	0	3	51	1.16
50133103--50133172	33	2.2	33	97	2	133	60	8	2	28	1.41
50136114--50136153	21	1.9	21	85	10	55	32	5	5	57	1.42
50136114--50136160	21	2.5	18	78	18	51	34	6	4	55	1.45
50142284--50142546	40	6.4	40	81	11	320	22	23	28	25	1.99
50142288--50142525	83	2.9	83	95	1	415	22	22	29	25	1.99
50142284--50142546	123	2.1	121	82	11	322	22	23	28	25	1.99
50144978--50145211	48	4.9	48	88	3	330	25	17	29	26	1.98
50151998--50152036	15	2.6	15	100	0	78	15	30	38	15	1.88
50152386--50152431	22	2.2	22	84	7	60	19	41	19	19	1.91
50161967--50162081	43	2.7	43	82	5	126	33	26	13	26	1.93
50165155--50165338	48	3.8	48	85	0	251	27	31	17	23	1.97
50166854--50166913	28	2.2	26	77	11	66	26	26	11	35	1.91
50166868--50166939	28	2.6	28	88	0	99	29	27	12	30	1.93
50169815--50170122	141	2.2	141	90	1	474	36	17	11	34	1.85
50173872--50173919	21	2.3	22	82	10	64	72	6	8	12	1.26
50173998--50174056	31	1.9	30	86	3	82	27	16	5	50	1.66
50181062--50181099	20	1.9	20	89	10	60	65	7	2	23	1.32
50194101--50194324	40	5.6	40	85	5	272	25	23	25	25	2.00
50194105--50194324	83	2.7	80	87	5	293	24	24	26	25	2.00
50202274--50202497	40	5.6	40	87	3	306	24	23	26	25	2.00
50202278--50202497	83	2.7	80	88	5	302	23	24	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50210488--50210711	40	5.6	40	87	3	306	24	23	26	25	2.00
50210492--50210711	83	2.7	80	88	5	302	23	24	27	25	2.00
50218680--50218903	40	5.6	40	87	3	306	24	23	26	25	2.00
50218684--50218903	83	2.7	80	88	5	302	23	24	27	25	2.00
50221146--50221179	17	2.0	17	94	0	59	52	2	11	32	1.53
50223451--50223668	108	2.0	108	98	0	418	33	11	16	38	1.85
50224668--50224804	58	2.4	58	83	2	177	44	1	2	51	1.25
50224762--50224789	14	2.0	14	100	0	56	42	0	0	57	0.99
50224937--50225003	12	5.6	12	79	10	75	44	0	0	55	0.99
50224950--50225004	10	5.9	10	73	26	50	47	0	0	52	1.00
50224930--50225039	36	3.1	36	89	7	154	47	0	0	51	1.06
50224949--50225039	24	3.8	25	75	15	84	47	0	1	51	1.07
50224938--50225039	12	8.7	11	76	15	66	47	0	0	51	1.07
50225224--50225313	44	2.0	46	84	4	121	35	26	5	32	1.80
50225299--50225337	16	2.4	16	82	0	51	33	25	5	35	1.78
50238533--50238572	21	2.0	21	85	5	55	52	10	2	35	1.48
50239239--50239281	22	2.0	22	100	0	86	37	16	4	41	1.69
50244584--50244650	30	2.3	29	92	5	116	31	29	1	37	1.67
50246680--50246720	21	2.0	21	90	0	64	31	41	19	7	1.79
50253125--50253154	10	2.8	11	90	10	53	36	0	26	36	1.57
50256807--50256882	37	2.1	37	83	14	95	25	7	22	44	1.79
50258788--50258850	15	4.2	15	79	0	72	15	15	15	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50262452--50262487	17	2.1	17	100	0	72	25	5	19	50	1.69
50263141--50263216	37	2.1	37	83	14	95	25	7	23	43	1.80
50275422--50275471	27	1.9	26	84	8	66	42	10	14	34	1.78
50279597--50279641	17	2.6	17	92	0	72	35	8	17	37	1.81
50281530--50281889	45	8.1	45	90	2	512	23	20	28	28	1.99
50283505--50283821	46	6.7	46	74	12	225	27	19	29	24	1.98
50289332--50289377	23	2.0	23	100	0	92	30	13	17	39	1.87
50294548--50294754	53	3.8	53	77	3	216	37	18	24	19	1.94
50300708--50300885	27	6.6	27	84	3	205	29	28	15	26	1.96
50300729--50300884	82	1.9	81	88	3	233	29	28	15	26	1.96
50308741--50308918	27	6.6	27	84	3	205	29	28	15	26	1.96
50308762--50308917	82	1.9	81	88	3	233	29	28	15	26	1.96
50323157--50323358	108	1.9	110	88	4	311	24	24	17	33	1.96
50323111--50323365	55	4.8	54	78	6	227	23	24	17	34	1.95
50323464--50323491	14	2.0	14	100	0	56	42	7	7	42	1.59
50324979--50325007	11	2.6	11	100	0	58	31	27	6	34	1.83
50326393--50326579	6	30.3	6	72	17	125	49	13	17	19	1.80
50326414--50326535	37	3.3	37	78	6	124	50	14	17	18	1.79
50326419--50326575	62	2.5	62	93	0	260	48	14	17	19	1.81
50326481--50326557	37	2.1	37	90	0	118	48	16	18	16	1.82
50326419--50326579	25	6.5	25	77	9	104	48	14	18	19	1.81
50326697--50326756	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50326725--50326861	67	2.0	67	87	5	193	29	20	28	21	1.98
50326796--50326846	27	1.9	26	84	4	66	35	21	25	17	1.95
50327048--50327113	27	2.5	26	78	7	69	40	19	19	19	1.91
50327091--50327207	27	4.3	27	79	8	130	25	18	17	37	1.93
50327090--50327205	54	2.1	54	80	3	144	25	18	18	37	1.94
50327159--50327503	27	12.8	26	78	7	235	31	9	20	38	1.85
50327297--50327503	27	7.7	27	86	3	247	31	8	20	40	1.82
50329104--50329163	29	2.1	29	93	0	102	41	30	0	28	1.56
50329110--50329157	15	3.3	15	73	5	53	43	27	0	29	1.55
50329379--50329414	13	2.7	13	86	4	54	80	5	2	11	0.98
50329379--50329415	14	2.7	14	91	4	58	78	5	2	13	1.03
50329390--50329440	15	3.1	17	80	8	52	74	5	3	15	1.16
50330466--50330521	30	1.9	28	85	7	76	53	3	30	12	1.55
50333659--50333764	48	2.2	48	85	9	137	14	24	1	59	1.45
50333740--50333824	18	4.6	17	71	16	62	17	28	2	51	1.58
50334790--50334871	29	2.9	29	82	8	89	8	14	4	71	1.26
50334809--50334859	15	3.5	15	78	10	61	3	13	5	76	1.11
50334790--50334859	29	2.4	30	85	7	90	8	14	5	71	1.29
50334864--50334888	11	2.3	11	100	0	50	16	0	8	76	1.02
50336373--50336419	20	2.3	20	81	0	58	23	12	34	29	1.92
50339621--50339680	29	2.1	29	93	0	102	41	30	0	28	1.56
50339627--50339674	15	3.3	15	73	5	53	43	27	0	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50351196--50351315	25	4.8	25	93	4	206	25	21	26	26	2.00
50351523--50351763	27	8.9	27	83	8	285	25	22	17	34	1.95
50351546--50351763	81	2.7	81	87	5	325	25	22	17	35	1.95
50351698--50351908	27	7.9	27	82	6	162	28	14	19	36	1.91
50351783--50351960	27	6.6	27	84	2	214	28	10	21	40	1.85
50351808--50351992	27	6.9	26	83	3	163	29	8	22	38	1.84
50351792--50351960	81	2.1	81	87	2	241	28	10	21	40	1.85
50351835--50351985	81	1.9	81	84	2	205	29	7	23	39	1.81
50351953--50352136	27	6.8	27	87	0	224	41	5	20	31	1.76
50351962--50352161	81	2.5	83	88	1	264	41	6	21	31	1.78
50351953--50352161	27	7.7	27	84	0	220	40	6	21	32	1.78
50354763--50354868	43	2.5	43	81	6	117	33	23	14	29	1.94
50356102--50356130	14	2.0	15	93	6	51	75	0	10	13	1.04
50358846--50359049	40	5.1	40	80	8	220	25	27	22	25	2.00
50358867--50359047	79	2.3	80	81	7	208	25	27	22	24	2.00
50360289--50360342	23	2.3	23	84	6	65	3	20	1	74	1.07
50362761--50362861	24	4.2	24	93	2	150	32	1	41	23	1.66
50364266--50364376	54	2.1	53	86	1	150	17	20	21	40	1.91
50364266--50364376	27	4.2	26	82	5	123	17	20	21	40	1.91
50366834--50366997	31	5.3	31	96	0	301	29	25	15	29	1.96
50367021--50367154	42	3.2	42	94	0	241	34	20	13	32	1.91
50367302--50367371	25	2.8	26	84	4	90	28	24	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50368181--50368246	27	2.4	27	80	5	80	19	24	18	37	1.93
50368296--50368505	27	7.7	27	75	8	124	30	10	19	39	1.86
50368524--50368635	27	4.1	27	83	0	116	38	6	22	33	1.79
50373933--50374033	24	4.2	24	94	0	157	32	1	40	24	1.67
50375357--50375467	27	4.1	27	79	5	100	16	22	22	38	1.92
50375357--50375467	54	2.1	53	83	5	134	16	22	22	38	1.92
50378614--50378652	19	2.1	19	85	9	53	28	10	2	58	1.44
50380247--50380303	30	2.0	28	86	6	78	52	3	28	15	1.59
50384675--50384825	39	3.9	39	89	0	239	23	20	27	28	1.99
50389684--50389820	46	3.0	46	82	2	168	25	30	7	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316