genome.fa.s1.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  162  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51494685--51494760	31	2.5	31	93	0	125	32	19	5	42	1.74
51512606--51512803	27	7.3	27	83	4	229	28	24	7	39	1.82
51512606--51512803	81	2.4	81	89	1	290	28	24	7	39	1.82
51512795--51512984	27	7.1	27	76	9	149	38	21	10	30	1.86
51512793--51512984	54	3.6	53	78	9	194	39	20	9	30	1.85
51512807--51512959	80	1.9	80	93	0	261	40	20	8	30	1.82
51512825--51513050	27	8.3	27	76	4	186	38	18	11	32	1.86
51513973--51514042	25	2.8	25	93	0	113	27	25	22	24	2.00
51513972--51514055	25	3.4	24	83	8	98	29	22	22	25	1.99
51514262--51514344	31	2.7	31	92	3	134	30	15	25	28	1.96
51514372--51514440	33	2.1	34	83	2	86	21	17	26	34	1.95
51516618--51516815	27	7.3	27	81	4	202	28	24	7	39	1.82
51516632--51516815	54	3.4	54	85	1	235	29	23	6	39	1.80
51516618--51516815	81	2.4	81	84	3	254	28	24	7	39	1.82
51516807--51516997	27	7.1	27	77	10	169	39	21	9	29	1.85
51516814--51516970	54	2.9	53	86	4	208	40	19	8	31	1.83
51516814--51516972	81	2.0	81	91	0	255	39	20	8	31	1.83
51516819--51517060	27	8.9	27	77	8	114	40	19	9	31	1.82
51517114--51517205	27	3.4	27	87	3	123	32	20	26	20	1.97
51518013--51518082	25	2.8	25	93	0	113	27	25	22	24	2.00
51518012--51518107	25	3.9	24	81	9	95	28	23	22	25	2.00
51518013--51518107	50	1.9	50	80	8	113	28	24	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51519505--51519561	20	2.9	20	85	10	66	42	7	19	31	1.78
51519618--51519714	26	3.8	26	86	4	128	27	19	18	34	1.95
51520268--51520306	20	1.9	21	89	5	62	30	5	2	61	1.31
51522520--51522794	39	7.1	39	94	0	471	21	26	29	22	1.99
51531450--51531524	20	3.8	20	87	6	102	38	10	18	32	1.85
51531574--51531693	26	4.7	26	84	2	163	27	23	22	26	1.99
51531574--51531693	52	2.3	52	88	2	181	27	23	22	26	1.99
51533294--51533370	29	2.7	29	91	0	118	29	29	14	25	1.95
51533594--51533630	16	2.3	16	90	0	56	8	21	21	48	1.76
51534680--51534712	16	2.0	17	94	5	59	9	6	36	48	1.60
51540746--51540810	28	2.3	28	94	0	112	66	0	7	26	1.19
51556468--51556513	18	2.7	17	87	9	67	56	0	0	43	0.99
51556469--51556508	18	2.2	18	95	0	71	62	0	0	37	0.95
51560028--51560075	24	2.0	24	100	0	96	20	33	20	25	1.97
51565121--51565154	10	3.4	10	91	0	50	26	29	29	14	1.95
51571865--51572018	67	2.3	65	85	7	193	32	16	29	21	1.96
51585390--51585425	19	1.9	19	88	5	56	44	0	11	44	1.39
51585829--51585990	67	2.5	66	79	6	186	27	16	31	24	1.96
51589854--51589980	40	3.2	40	88	3	184	28	25	22	22	1.99
51592618--51592682	27	2.4	27	86	0	76	50	6	15	27	1.67
51597757--51597829	38	1.9	38	88	0	110	20	21	27	30	1.98
51597822--51597976	43	3.6	43	89	0	238	12	25	30	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51599523--51599626	48	2.2	48	81	6	113	30	22	29	17	1.96
51603246--51603318	38	1.9	38	88	0	110	20	21	27	30	1.98
51603290--51603474	43	4.3	43	84	4	232	15	24	31	29	1.95
51607877--51608015	29	4.8	29	82	4	140	28	15	30	25	1.96
51607882--51608015	28	4.7	27	75	8	97	29	16	29	24	1.96
51611058--51611207	27	5.5	27	81	1	147	26	16	28	28	1.97
51611058--51611207	82	1.8	81	84	4	203	26	16	28	28	1.97
51611057--51611207	55	2.8	53	79	4	158	26	16	28	28	1.97
51618024--51618118	27	3.6	25	83	10	91	38	20	24	16	1.92
51618024--51618136	55	2.1	54	83	11	142	36	21	24	17	1.95
51618048--51618136	27	3.2	28	80	6	110	34	23	23	17	1.96
51619685--51619716	16	2.0	16	100	0	64	31	25	18	25	1.98
51619686--51619725	16	2.6	15	88	11	55	30	22	22	25	1.99
51624797--51624909	27	4.1	27	82	8	131	36	21	24	17	1.95
51624797--51624909	55	2.1	54	86	5	156	36	21	24	17	1.95
51632403--51632514	27	4.1	26	84	8	134	36	23	22	17	1.95
51632403--51632514	55	2.1	54	86	5	154	36	23	22	17	1.95
51636171--51636304	56	2.4	56	89	0	205	31	24	15	28	1.96
51640248--51640293	20	2.3	20	85	7	58	76	2	6	15	1.09
51640268--51640351	14	6.1	13	69	15	53	72	2	3	21	1.11
51640269--51640351	27	3.0	26	72	11	69	72	2	3	21	1.12
51640322--51640354	16	2.1	16	94	5	59	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51644450--51644506	30	1.9	30	85	7	80	15	28	36	19	1.92
51653363--51653437	9	7.9	9	72	11	60	77	4	2	16	1.03
51653363--51653444	23	3.5	23	74	15	69	76	3	2	17	1.03
51653407--51653444	7	5.7	7	84	12	53	76	0	0	23	0.79
51653519--51653594	14	5.1	15	71	21	52	72	1	3	22	1.09
51653519--51653564	20	2.2	20	84	11	56	76	2	2	19	1.00
51653537--51653578	17	2.5	17	80	3	50	73	0	2	23	0.94
51654336--51654469	60	2.2	63	78	9	152	29	25	17	27	1.98
51663530--51663644	42	2.8	42	80	4	108	30	11	26	31	1.91
51663543--51663644	42	2.5	42	77	7	109	31	11	27	29	1.92
51663543--51663664	42	2.9	42	74	12	106	31	11	27	30	1.91
51671282--51671409	39	3.3	38	78	3	130	25	22	18	33	1.97
51679134--51679258	39	3.2	39	84	0	178	22	26	21	29	1.99
51682141--51682213	35	2.1	35	97	0	137	32	30	10	26	1.90
51688741--51688892	67	2.3	67	79	9	166	32	15	28	23	1.95
51692385--51692427	17	2.6	17	81	3	52	41	20	4	32	1.73
51693661--51693791	50	2.6	51	82	12	173	27	28	16	27	1.97
51697314--51697488	47	3.7	47	92	0	251	33	29	13	23	1.93
51705497--51705544	25	2.0	24	84	12	62	25	22	20	31	1.98
51708502--51708656	27	5.7	27	93	3	247	25	13	29	31	1.94
51708502--51708656	55	2.8	55	95	0	265	25	13	29	31	1.94
51716510--51716661	27	5.6	27	93	3	241	26	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51716510--51716661	55	2.8	55	94	0	259	26	13	28	30	1.94
51724836--51724917	40	2.0	40	97	0	155	36	8	17	37	1.80
51725094--51725133	21	1.9	21	100	0	80	50	7	27	15	1.70
51725378--51725418	22	1.9	22	90	5	66	19	24	39	17	1.92
51740138--51740162	12	2.1	12	100	0	50	76	0	0	24	0.80
51741441--51741520	39	2.1	39	100	0	160	15	17	5	62	1.49
51743059--51743228	40	4.3	40	85	0	207	24	30	21	23	1.99
51750946--51751108	38	4.3	40	80	9	171	25	30	20	23	1.99
51750944--51751108	78	2.2	74	83	4	204	25	30	20	23	1.98
51750946--51751114	40	4.4	39	81	8	170	25	30	20	24	1.99
51763983--51764152	40	4.3	40	85	0	207	24	30	21	23	1.99
51771882--51772051	40	4.3	40	83	2	191	24	29	22	24	1.99
51776709--51777081	47	8.1	47	89	4	544	32	9	30	28	1.88
51777200--51777279	38	2.1	37	86	6	108	25	18	30	26	1.98
51777200--51777279	37	2.1	38	86	6	110	25	18	30	26	1.98
51780977--51781168	40	4.8	40	78	6	176	26	22	27	24	2.00
51781030--51781194	79	2.1	79	80	6	183	27	21	26	24	1.99
51784014--51784047	17	2.0	17	88	11	52	73	0	17	8	1.08
51786004--51786074	25	2.8	25	87	4	81	14	25	5	54	1.61
51786017--51786081	25	2.6	25	83	9	87	16	24	7	50	1.71
51786137--51786175	19	2.1	19	100	0	78	25	20	25	28	1.99
51788268--51788365	46	2.3	40	79	16	108	34	15	12	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51790638--51790797	32	5.0	32	89	0	248	33	13	10	43	1.77
51790638--51790797	64	2.5	64	93	0	275	33	13	10	43	1.77
51792814--51793241	213	2.0	213	98	0	829	37	20	15	25	1.92
51794247--51794584	180	1.9	180	89	0	523	37	10	21	31	1.86
51797385--51797429	15	3.1	14	83	6	54	15	20	13	51	1.76
51799932--51799985	27	2.0	27	88	0	81	29	14	27	27	1.95
51800571--51800899	180	1.8	181	92	2	554	38	7	19	34	1.81
51807318--51807365	21	2.2	21	85	10	62	33	14	20	31	1.93
51814237--51814377	55	2.6	54	81	2	165	41	19	19	19	1.91
51823171--51823304	6	21.8	6	73	13	103	50	13	16	19	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316