genome.fa.s1.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  117  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37023427--37023558	27	4.9	27	83	8	153	35	16	21	25	1.95
37023424--37023561	54	2.6	55	81	9	169	35	17	21	26	1.95
37023976--37024187	6	34.3	6	71	17	132	19	17	13	49	1.80
37023976--37024068	25	3.7	25	91	0	150	19	19	13	47	1.82
37023998--37024164	62	2.7	62	90	0	271	19	18	13	47	1.82
37024066--37024130	25	2.6	25	92	0	103	18	18	15	47	1.82
37024085--37024178	37	2.5	37	87	0	125	19	18	12	50	1.78
37025899--37025967	21	3.1	21	68	15	59	23	13	24	39	1.90
37025903--37025990	45	2.0	45	93	0	149	23	12	23	39	1.89
37028347--37028392	15	2.8	17	83	12	69	47	2	2	47	1.26
37054583--37054714	40	3.3	40	85	5	144	26	28	21	24	1.99
37054611--37054714	39	2.6	40	86	4	140	26	28	19	25	1.98
37055577--37055621	23	2.0	22	83	12	56	40	15	8	35	1.79
37057922--37058014	27	3.5	26	82	8	107	36	12	21	29	1.91
37064600--37065020	48	8.8	48	71	8	275	26	27	19	26	1.99
37064605--37065029	96	4.4	97	81	4	439	26	27	19	26	1.99
37065729--37065760	15	2.1	15	94	0	55	43	18	3	34	1.66
37065735--37065768	15	2.3	15	89	0	50	52	23	2	20	1.60
37068143--37068271	46	2.8	46	92	2	206	19	20	29	31	1.97
37075203--37075378	46	3.8	46	77	14	191	19	19	30	30	1.97
37075200--37075371	93	1.8	93	92	2	292	20	20	30	29	1.97
37077948--37077989	21	2.0	21	86	4	59	54	0	7	38	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37080556--37080865	138	2.2	138	81	4	340	25	19	31	23	1.98
37080697--37080870	94	1.9	94	83	5	230	25	19	31	23	1.98
37084236--37084386	43	3.6	41	75	11	126	27	19	26	26	1.99
37085471--37085562	6	14.8	6	69	22	57	47	16	19	16	1.82
37085471--37085562	25	3.7	25	88	5	141	47	16	19	16	1.82
37085680--37085760	27	3.0	27	82	8	94	38	19	22	19	1.94
37085804--37085851	20	2.4	20	96	0	87	35	35	20	8	1.83
37085847--37085905	22	2.7	22	86	0	82	37	23	23	15	1.93
37086441--37086651	27	8.0	27	77	9	184	25	21	21	31	1.98
37092956--37093158	40	5.1	40	86	4	268	25	28	22	23	1.99
37097578--37097603	13	2.0	13	100	0	52	53	15	0	30	1.42
37102755--37102797	22	2.0	22	90	4	70	9	25	32	32	1.88
37108730--37108848	57	2.1	57	100	0	238	51	11	6	30	1.64
37109250--37109297	17	2.8	17	96	0	87	12	37	35	14	1.84
37123365--37123676	40	7.8	40	94	0	525	25	26	22	25	2.00
37124765--37124930	47	3.5	47	91	1	244	26	28	10	33	1.90
37124830--37124901	22	3.1	22	64	24	58	23	29	13	33	1.93
37128799--37129230	40	10.8	40	94	0	729	24	27	21	25	2.00
37129249--37129285	14	2.6	14	100	0	74	51	21	5	21	1.68
37130485--37130941	40	11.4	40	92	0	725	25	27	21	24	1.99
37130926--37131019	45	2.1	45	93	0	161	34	24	9	31	1.88
37132257--37132430	37	4.7	37	91	0	258	24	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37132588--37132769	48	3.8	48	88	4	285	30	25	7	36	1.83
37132585--37132768	98	1.9	97	92	4	309	30	26	7	36	1.83
37132739--37132911	47	3.7	47	90	0	265	26	28	12	32	1.92
37132832--37132903	22	3.1	22	67	18	65	25	29	13	31	1.94
37132739--37132932	47	4.1	45	82	6	208	26	29	10	32	1.90
37147038--37147096	26	2.3	25	80	8	66	57	1	3	37	1.25
37155116--37155183	9	7.6	9	86	0	91	45	16	8	29	1.77
37155116--37155183	27	2.5	27	90	0	109	45	16	8	29	1.77
37155203--37155249	6	7.5	6	86	9	67	17	2	2	78	0.94
37155181--37155273	32	2.9	31	73	16	84	26	1	4	67	1.16
37160521--37160812	49	6.1	49	91	4	470	28	30	8	31	1.88
37160521--37160812	96	3.0	96	95	0	503	28	30	8	31	1.88
37164339--37164599	40	6.5	40	82	4	296	24	27	22	24	2.00
37164905--37164983	29	2.7	29	84	5	97	26	32	16	24	1.96
37164965--37165067	43	2.4	43	100	0	206	26	35	15	22	1.94
37167094--37167385	49	6.1	49	91	4	470	28	30	8	31	1.88
37167094--37167385	96	3.0	96	95	0	503	28	30	8	31	1.88
37188912--37188938	14	1.9	14	100	0	54	62	0	0	37	0.95
37193358--37193395	18	2.1	18	90	9	60	52	0	15	31	1.43
37197179--37197232	14	3.9	14	80	0	63	22	0	33	44	1.53
37197298--37197388	29	3.2	28	78	12	105	23	1	37	38	1.62
37197300--37197400	14	7.1	14	77	12	91	23	0	37	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37197298--37197416	7	16.7	7	72	10	80	24	0	35	39	1.61
37197762--37197886	61	2.0	61	93	0	214	44	12	16	27	1.83
37197825--37198041	84	2.6	83	85	5	267	40	12	21	25	1.89
37215111--37215718	110	5.7	106	75	13	563	36	6	3	53	1.42
37215066--37215679	99	6.0	99	72	16	473	37	6	3	53	1.42
37215311--37215375	18	3.6	18	70	4	58	36	3	0	60	1.13
37215311--37215390	37	2.1	37	84	6	108	41	3	0	55	1.18
37215039--37215718	209	3.3	209	95	0	1225	36	6	3	54	1.42
37215738--37215890	9	16.8	9	70	17	93	47	14	1	36	1.56
37215746--37215896	16	9.4	16	71	13	80	47	14	1	35	1.56
37215764--37215875	30	3.6	30	72	17	111	46	14	2	36	1.59
37215733--37215893	64	2.5	64	92	0	268	47	15	1	35	1.57
37220971--37221002	13	2.4	14	94	5	57	37	0	9	53	1.34
37221805--37221895	43	2.1	43	95	0	164	34	19	20	25	1.97
37221831--37221966	43	3.2	43	82	6	143	33	26	17	22	1.96
37221835--37221964	42	3.1	42	82	5	129	32	26	17	23	1.97
37223954--37224175	46	4.8	45	78	11	148	23	28	19	27	1.98
37224006--37224222	46	4.7	46	77	13	178	23	29	19	27	1.98
37224006--37224225	94	2.4	90	82	10	241	23	30	20	26	1.98
37223956--37224222	140	1.9	141	81	7	328	23	29	19	28	1.98
37227313--37227354	21	2.0	21	90	0	66	28	19	28	23	1.98
37240393--37240431	20	2.0	20	89	0	60	46	5	12	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37241459--37241486	14	2.0	14	100	0	56	35	14	0	50	1.43
37241986--37242098	43	2.6	43	87	2	165	21	19	34	24	1.96
37243233--37243280	20	2.4	20	96	0	87	8	29	39	22	1.83
37250077--37250304	48	4.8	48	86	2	307	27	28	17	26	1.97
37251102--37251147	20	2.3	20	82	14	60	28	28	17	26	1.98
37251114--37251157	19	2.2	20	84	4	54	34	25	18	22	1.96
37253015--37253441	38	11.1	38	84	5	502	32	25	21	21	1.98
37263869--37263919	19	2.7	19	100	0	102	11	35	27	25	1.91
37265109--37265280	48	3.6	47	85	4	220	27	29	16	26	1.97
37269716--37269835	56	2.1	56	96	0	222	45	10	22	22	1.82
37270962--37271146	40	4.6	39	80	7	169	25	22	26	25	2.00
37271015--37271179	79	2.1	79	81	4	190	26	21	26	25	1.99
37271015--37271165	40	3.8	40	83	4	128	25	21	27	25	2.00
37278290--37278419	69	1.9	69	81	0	161	37	18	22	21	1.94
37279840--37279918	37	2.1	37	90	0	122	25	31	18	24	1.98
37280037--37280306	47	5.7	47	92	0	416	28	30	8	32	1.87
37286648--37286710	25	2.5	25	94	5	110	26	25	22	25	2.00
37286915--37287054	27	5.2	27	80	3	158	26	19	17	36	1.94
37286928--37287054	53	2.4	53	85	4	166	26	18	18	36	1.94
37287147--37287223	27	2.9	27	92	0	127	33	5	19	41	1.74
37287147--37287245	27	3.7	26	78	9	83	32	7	19	41	1.78
37298112--37298548	47	9.2	47	90	2	676	31	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37298112--37298548	96	4.6	94	91	1	676	31	8	30	29	1.87
37298112--37298548	143	3.1	142	90	3	691	31	8	30	29	1.87
37298666--37298744	37	2.1	37	90	0	122	24	18	31	25	1.98
37300595--37300783	43	4.4	43	97	0	351	23	15	34	25	1.95
37300765--37300838	29	2.6	29	89	4	105	25	16	32	25	1.96
37301132--37301399	40	6.7	40	82	6	242	26	20	28	23	1.99
37301132--37301399	120	2.2	120	79	7	276	26	20	28	23	1.99
37301333--37301409	40	1.9	40	86	0	109	22	22	29	25	1.99
37304685--37305121	47	9.2	47	89	2	658	31	8	30	29	1.86
37304685--37305121	96	4.6	94	91	1	658	31	8	30	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316