genome.fa.s1.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  282  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93448382--93448445	24	2.7	24	85	0	92	48	6	6	39	1.54
93452179--93452380	41	4.9	41	86	3	237	33	23	22	21	1.98
93452545--93452596	14	3.7	14	76	0	50	28	0	23	48	1.51
93452649--93452748	7	14.0	7	73	12	78	22	0	40	38	1.54
93452653--93452745	36	2.6	34	77	9	96	22	0	39	37	1.54
93456114--93456204	29	3.1	29	98	1	173	29	8	13	48	1.72
93457877--93457961	43	2.0	43	90	0	134	24	17	31	25	1.97
93466524--93466560	12	3.1	13	81	18	53	62	0	0	37	0.96
93466951--93466993	22	2.0	22	90	9	70	30	2	0	67	1.03
93475017--93475082	27	2.4	27	82	5	80	33	22	28	15	1.94
93481028--93481085	24	2.4	24	75	13	64	20	20	15	43	1.88
93485089--93485145	30	1.9	30	88	0	87	29	24	8	36	1.86
93504952--93504987	2	18.0	2	100	0	72	50	50	0	0	1.00
93505662--93505707	21	2.3	21	88	7	69	0	26	2	71	0.97
93505673--93505714	15	2.8	15	75	13	50	0	21	4	73	1.01
93505701--93505747	24	2.0	24	83	8	60	4	17	4	74	1.14
93511626--93511803	27	6.6	27	81	3	169	30	27	14	26	1.95
93519721--93519788	21	3.2	21	73	8	75	27	27	27	16	1.97
93519729--93519807	21	3.8	21	75	6	79	25	25	29	20	1.99
93519728--93519820	42	2.2	42	88	0	132	24	24	31	19	1.98
93523525--93523632	29	3.8	29	84	6	130	25	29	16	27	1.97
93523856--93523890	16	2.2	16	89	0	52	11	22	17	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93525002--93525033	16	2.0	16	100	0	64	12	6	31	50	1.65
93536463--93536510	24	2.0	24	100	0	96	25	29	8	37	1.85
93545515--93545626	25	4.5	25	75	8	77	20	22	19	37	1.94
93552108--93552148	14	2.7	15	88	7	57	56	2	0	41	1.13
93552168--93552223	28	2.0	28	100	0	112	35	10	14	39	1.81
93558721--93558760	20	2.0	21	90	5	64	47	0	7	45	1.31
93560480--93560678	100	2.0	100	92	1	328	36	4	8	51	1.52
93561463--93561532	31	2.3	31	89	0	104	44	14	11	30	1.80
93564281--93564319	13	2.9	13	88	11	53	30	15	12	41	1.85
93578863--93578925	28	2.2	28	85	0	81	33	6	26	33	1.82
93580525--93580555	14	2.2	14	94	0	53	61	12	6	19	1.53
93583217--93583297	40	2.0	40	97	0	153	27	28	13	30	1.94
93590388--93590431	18	2.4	18	85	10	63	38	2	2	56	1.24
93590915--93590963	25	2.0	25	88	8	73	46	6	0	46	1.27
93591316--93591376	18	3.3	18	72	16	54	75	1	0	22	0.89
93598910--93598959	18	2.7	19	78	12	59	62	0	2	36	1.07
93600978--93601239	129	2.0	130	90	0	418	28	11	19	41	1.85
93601661--93601691	15	2.1	15	93	0	53	35	12	9	41	1.76
93604584--93604616	15	2.2	15	94	0	57	27	9	12	51	1.69
93612201--93612263	27	2.5	26	82	12	71	31	25	0	42	1.55
93612280--93612318	20	2.1	19	90	9	62	38	20	0	41	1.53
93612607--93612692	43	2.0	43	100	0	172	34	25	0	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93613069--93613137	5	13.6	5	75	13	61	59	0	1	39	1.06
93613075--93613138	13	5.1	13	75	11	62	60	0	1	37	1.06
93613075--93613135	16	3.7	16	82	10	70	60	0	1	37	1.07
93617515--93617671	43	3.7	43	78	10	151	29	15	22	31	1.95
93617558--93617679	42	2.9	43	76	11	126	30	16	23	29	1.96
93620976--93621014	20	2.1	19	90	9	62	38	20	0	41	1.53
93621729--93621811	5	16.2	5	74	13	71	57	2	1	38	1.19
93621728--93621775	24	1.9	26	87	8	73	56	2	0	41	1.11
93621726--93621800	29	2.5	29	81	10	80	57	2	1	38	1.21
93621735--93621805	16	4.6	16	76	15	69	59	2	1	36	1.21
93621735--93621814	16	4.9	16	69	14	56	60	2	1	36	1.18
93629120--93629176	22	2.6	22	80	0	78	38	15	10	35	1.82
93633083--93633137	26	2.1	26	100	0	110	47	7	3	41	1.49
93634373--93634409	12	2.9	13	92	8	67	21	8	29	40	1.82
93634337--93634409	13	5.5	13	73	15	69	28	8	26	36	1.85
93636427--93636665	72	3.3	72	88	1	365	54	15	6	23	1.64
93645163--93645199	5	7.4	5	88	11	58	81	0	2	16	0.81
93645628--93645676	21	2.3	22	85	7	73	44	14	4	36	1.64
93646475--93646569	35	2.7	35	77	11	95	42	1	4	52	1.27
93646764--93646818	21	2.6	21	88	0	83	29	30	9	30	1.88
93647292--93647472	89	2.0	89	98	0	353	44	6	2	46	1.40
93647312--93647455	44	3.2	45	70	20	149	45	5	2	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93647569--93647621	21	2.5	21	87	6	72	30	37	9	22	1.86
93647633--93647721	44	2.0	44	84	4	117	33	33	13	19	1.90
93647924--93647997	18	4.1	18	72	11	62	40	1	1	56	1.16
93648731--93648781	20	2.6	21	79	14	65	54	0	0	45	0.99
93657783--93657986	46	4.3	48	88	7	267	36	14	21	27	1.92
93657717--93657986	98	2.7	98	93	0	459	35	14	22	28	1.93
93657949--93658131	37	5.0	37	91	1	298	37	16	21	24	1.94
93657949--93658132	74	2.5	74	95	1	336	37	16	21	24	1.93
93660107--93660212	42	2.5	43	76	3	115	36	23	21	17	1.95
93660107--93660214	21	5.0	22	79	5	96	37	23	22	17	1.94
93660582--93660639	15	3.8	15	88	2	89	51	12	0	36	1.39
93662832--93662864	15	2.1	16	88	5	50	54	0	3	42	1.15
93664365--93664444	18	4.3	18	73	14	56	50	10	2	37	1.50
93664724--93664766	22	2.0	22	86	9	61	37	0	4	58	1.19
93669249--93669360	51	2.2	51	87	3	154	27	18	13	40	1.88
93671000--93671059	29	2.1	29	100	0	120	41	6	0	51	1.28
93673502--93673562	23	2.7	24	73	19	60	49	4	6	39	1.50
93677534--93677671	44	3.1	44	65	12	120	19	23	23	33	1.97
93677510--93677898	88	4.5	88	87	3	484	20	22	20	36	1.95
93677703--93677848	44	3.3	43	63	11	98	19	22	21	35	1.96
93684282--93684330	25	2.0	25	88	4	73	16	4	26	53	1.61
93684453--93684490	13	2.9	13	88	7	51	60	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93684637--93684679	22	2.0	22	86	9	61	32	4	9	53	1.53
93685493--93685522	7	4.1	7	95	4	51	60	0	0	40	0.97
93685433--93685513	19	4.2	19	70	20	60	58	1	0	40	1.06
93687551--93687597	17	2.7	18	81	15	62	57	2	2	38	1.23
93687893--93687951	23	2.4	25	77	8	68	44	0	5	50	1.24
93690427--93690469	11	4.0	11	84	3	61	30	2	46	20	1.63
93690427--93690469	21	2.0	21	90	4	68	30	2	46	20	1.63
93694514--93694588	18	4.2	18	84	6	107	33	16	22	28	1.95
93695121--93695163	11	4.0	11	84	3	61	30	2	46	20	1.63
93695121--93695163	21	2.0	21	90	4	68	30	2	46	20	1.63
93695778--93695883	42	2.5	42	98	0	203	34	5	24	34	1.79
93698739--93698877	62	2.2	62	96	0	251	48	7	6	37	1.58
93698798--93698832	14	2.5	14	90	0	52	42	2	5	48	1.41
93700971--93701008	18	2.1	18	85	9	51	21	26	10	42	1.85
93706229--93706381	62	2.5	62	86	2	218	23	30	22	23	1.99
93707561--93707730	10	17.9	10	66	24	59	61	2	0	34	1.15
93707588--93707798	28	7.5	27	73	15	83	62	3	0	33	1.18
93707606--93707770	67	2.4	67	95	2	294	61	3	0	34	1.16
93707660--93707770	10	11.4	10	68	26	62	61	2	0	36	1.10
93707582--93707799	67	3.3	64	79	11	235	61	3	0	33	1.18
93707659--93707810	48	3.2	46	77	16	148	61	3	0	34	1.17
93707486--93707799	9	33.6	9	66	20	114	61	2	1	33	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93708292--93708367	27	2.8	27	75	13	75	42	3	2	51	1.34
93708368--93708416	18	2.7	19	84	6	57	18	4	4	73	1.15
93708513--93708572	31	2.0	31	93	3	104	33	6	15	45	1.72
93709869--93709915	23	2.0	23	84	8	60	42	2	0	55	1.12
93717637--93717678	20	2.1	20	86	0	57	33	19	2	45	1.63
93718758--93718786	13	2.3	13	94	5	51	34	0	0	65	0.93
93718931--93718956	12	2.2	12	100	0	52	92	0	7	0	0.39
93726629--93726824	97	2.0	98	96	1	367	28	14	14	42	1.84
93732980--93733128	73	2.0	73	100	0	298	31	14	22	31	1.94
93742338--93742420	24	3.3	25	69	25	68	33	1	2	62	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316