genome.fa.s1.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  207  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67467123--67467165	22	1.9	23	95	4	79	23	0	53	23	1.46
67479780--67479952	46	3.8	45	79	10	190	23	17	26	32	1.97
67479777--67479948	93	1.8	93	91	2	283	23	18	27	31	1.97
67487268--67487434	91	1.8	91	91	5	275	21	19	28	29	1.98
67492504--67492558	28	2.0	28	82	7	67	30	16	10	41	1.83
67492995--67493055	25	2.4	25	80	0	68	40	29	18	11	1.85
67493046--67493151	42	2.5	42	80	7	128	43	22	18	15	1.87
67493046--67493160	20	5.6	20	69	16	74	42	22	20	14	1.88
67494635--67494739	26	4.0	26	94	0	192	31	6	25	36	1.82
67495911--67495940	8	3.8	8	90	0	51	43	26	26	3	1.70
67496329--67496487	27	5.9	27	82	10	184	19	25	22	33	1.97
67496326--67496487	54	3.0	54	90	2	247	19	25	22	33	1.97
67500053--67500180	61	2.1	61	95	0	229	28	25	8	38	1.85
67505734--67505799	30	2.3	29	77	12	73	33	7	3	56	1.43
67507519--67507891	180	2.1	180	100	0	746	39	6	15	39	1.73
67514518--67514595	31	2.5	31	85	2	86	34	6	10	48	1.63
67514531--67514595	31	2.1	31	91	0	103	33	7	9	49	1.63
67521723--67521831	39	2.8	39	91	0	164	26	21	27	24	1.99
67526018--67526172	82	1.9	82	85	5	215	38	13	10	38	1.79
67527941--67528030	27	3.3	27	80	6	101	41	12	21	25	1.87
67528022--67528093	27	2.7	27	77	0	72	37	9	20	31	1.85
67527941--67528047	54	2.0	54	83	0	133	38	11	21	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67527966--67528094	54	2.4	54	76	0	123	37	11	20	30	1.89
67529241--67529327	43	2.0	43	84	4	113	51	2	21	24	1.59
67530213--67530251	17	2.3	17	95	0	69	30	20	7	41	1.80
67531293--67531392	36	2.8	36	89	0	146	28	12	16	44	1.83
67538428--67538495	19	3.5	19	71	13	59	35	2	2	58	1.28
67538467--67538506	19	2.1	19	85	0	53	42	0	0	57	0.98
67538612--67538649	9	4.2	9	86	0	58	31	10	10	47	1.72
67539507--67539560	24	2.2	24	78	12	65	44	0	1	53	1.11
67539734--67539788	26	2.1	26	86	0	74	38	5	5	50	1.48
67545080--67545117	18	2.1	19	85	5	51	47	18	2	31	1.62
67545404--67545562	42	3.6	43	77	6	124	26	25	18	28	1.98
67545456--67545576	42	2.9	42	82	0	125	28	27	17	26	1.97
67547739--67547801	30	2.1	30	88	5	92	23	3	14	58	1.50
67552014--67552234	47	4.7	46	75	9	164	21	28	20	28	1.98
67553690--67553907	40	5.5	40	92	1	332	24	28	23	23	2.00
67556378--67556402	12	2.1	12	100	0	50	60	16	8	16	1.58
67560433--67560520	6	14.3	6	75	17	83	47	15	18	18	1.83
67560433--67560520	19	4.8	18	75	18	83	47	15	18	18	1.83
67560442--67560520	31	2.5	31	93	0	131	48	15	18	17	1.82
67560447--67560493	25	1.9	24	95	4	85	44	17	21	17	1.86
67560640--67560699	27	2.3	26	82	2	66	35	20	21	23	1.96
67562064--67562290	40	5.7	40	94	0	391	22	29	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67570376--67570649	40	6.8	40	91	0	442	24	29	21	24	1.99
67578772--67578819	20	2.3	20	78	3	60	50	12	12	25	1.75
67585346--67585492	47	3.1	47	86	0	195	33	8	29	28	1.87
67585699--67585807	37	2.9	37	94	0	182	23	19	30	26	1.98
67586794--67586966	46	3.7	47	76	10	176	30	25	20	23	1.98
67586799--67586969	93	1.8	93	87	2	254	29	26	20	23	1.99
67587389--67587448	30	2.0	30	86	0	84	33	25	5	36	1.78
67596203--67596244	22	2.1	19	86	13	57	45	0	0	54	0.99
67596203--67596241	16	2.5	15	83	8	51	46	0	0	53	1.00
67597276--67597333	29	2.0	29	96	0	107	34	8	22	34	1.85
67599638--67599678	18	2.3	18	91	0	64	36	4	24	34	1.77
67603849--67603894	19	2.5	18	82	6	56	45	4	10	39	1.59
67603855--67603894	19	2.1	19	90	0	62	42	2	12	42	1.56
67608815--67608990	46	3.8	45	78	10	194	21	19	29	29	1.98
67608813--67608982	93	1.8	93	92	0	286	21	20	29	28	1.98
67618150--67618202	26	2.0	26	85	7	70	16	18	30	33	1.94
67618163--67618219	26	2.2	26	83	0	69	10	17	36	35	1.84
67625287--67625472	80	2.3	81	83	9	222	27	27	20	24	1.99
67625289--67625472	40	4.6	40	83	7	196	27	27	21	24	1.99
67633051--67633236	80	2.3	81	83	9	222	27	27	20	24	1.99
67633053--67633236	40	4.6	40	83	7	196	27	27	21	24	1.99
67639860--67639886	14	1.9	14	100	0	54	51	0	14	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67641307--67641341	18	1.9	18	88	0	52	51	0	11	37	1.38
67641563--67641733	45	3.8	45	85	2	229	36	17	19	26	1.94
67641563--67641733	89	1.9	90	87	3	256	36	17	19	26	1.94
67641656--67641825	45	3.7	44	78	9	135	40	17	21	20	1.91
67641560--67641774	90	2.4	89	81	2	234	38	16	20	24	1.92
67641701--67641860	45	3.5	45	78	5	140	43	16	22	17	1.88
67641744--67641860	48	2.5	47	83	4	139	44	15	22	17	1.86
67642737--67642842	52	2.0	52	96	0	194	43	2	21	32	1.67
67644506--67644649	43	3.3	43	80	3	155	31	15	20	31	1.94
67644508--67644666	86	1.9	85	82	4	203	30	16	21	31	1.95
67658195--67658292	50	2.0	50	89	0	151	45	8	20	25	1.78
67660715--67660768	27	2.0	27	88	0	81	38	5	14	40	1.70
67663843--67663968	6	21.5	6	95	4	231	32	0	17	50	1.47
67664806--67664848	15	2.9	15	89	0	59	18	13	11	55	1.68
67667324--67667377	27	2.0	27	85	0	72	38	7	14	38	1.75
67670108--67670226	42	2.8	41	75	11	114	26	18	26	29	1.98
67677450--67677529	42	1.9	42	82	10	101	27	20	25	27	1.99
67689058--67689093	18	2.0	18	88	0	54	44	0	8	47	1.33
67697528--67697590	30	2.1	30	87	0	90	28	6	11	53	1.60
67697673--67697712	18	2.1	18	86	9	53	25	0	10	65	1.24
67700219--67700266	24	2.0	24	100	0	96	41	25	16	16	1.89
67700826--67700918	44	2.1	45	86	11	129	35	25	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67700900--67700969	16	4.4	16	85	3	97	28	27	7	37	1.83
67704423--67704464	20	2.0	22	86	9	61	45	0	0	54	0.99
67704477--67704507	15	2.0	16	93	6	55	61	0	0	38	0.96
67704531--67704601	15	4.6	15	74	16	65	50	1	0	47	1.09
67705393--67705481	44	2.0	44	100	0	178	50	11	13	24	1.74
67713489--67713537	20	2.5	20	86	0	71	51	0	4	44	1.20
67713624--67713663	20	2.0	20	95	0	71	45	12	10	32	1.75
67714097--67714143	23	2.0	23	95	0	85	4	31	8	55	1.49
67714995--67715084	45	2.0	45	100	0	180	22	11	20	46	1.81
67718101--67718134	12	2.7	13	86	4	52	64	0	2	32	1.08
67718379--67718441	32	2.0	32	87	0	90	20	22	22	34	1.96
67720562--67720615	22	2.5	22	96	0	99	25	51	7	14	1.68
67728075--67728283	41	5.2	40	86	3	116	25	26	23	23	2.00
67728098--67728283	41	4.6	41	89	3	252	24	25	24	25	2.00
67728098--67728281	81	2.3	82	83	5	248	23	26	25	25	2.00
67745315--67745523	41	5.2	40	86	3	116	25	26	23	23	2.00
67745338--67745523	41	4.6	41	89	3	252	24	25	24	25	2.00
67745338--67745521	81	2.3	82	83	5	248	23	26	25	25	2.00
67753299--67753507	41	5.2	40	87	3	125	25	27	23	23	2.00
67753322--67753507	41	4.6	41	89	3	261	24	26	24	24	2.00
67753322--67753505	81	2.3	82	84	5	257	23	26	25	24	2.00
67758591--67758623	9	3.7	9	91	0	57	9	18	3	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67758590--67758630	18	2.3	18	86	0	64	9	14	2	73	1.19
67759419--67759444	8	3.2	8	100	0	52	76	0	0	23	0.78
67775184--67775227	21	2.0	22	95	4	81	31	9	25	34	1.87
67775186--67775235	21	2.3	22	89	6	75	32	12	20	36	1.89
67779518--67779547	16	1.9	15	93	6	51	33	23	0	43	1.54
67779747--67780040	50	5.8	50	81	3	331	31	26	17	25	1.97
67779759--67779989	101	2.3	99	87	1	309	30	26	17	25	1.97
67788900--67788937	19	2.0	20	89	5	60	26	10	7	55	1.61
67797309--67797489	39	4.6	39	82	6	197	24	28	21	25	1.99
67797309--67797490	78	2.3	79	83	4	217	25	28	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316