genome.fa.s1.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  181  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58388191--58388366	54	3.3	54	77	8	171	40	23	7	28	1.82
58388343--58388807	27	17.2	27	88	0	570	30	22	7	39	1.81
58389134--58389193	27	2.3	26	82	2	66	23	21	20	35	1.96
58389312--58389391	31	2.6	31	85	0	106	20	17	13	48	1.80
58389312--58389399	6	14.3	6	71	17	65	19	17	14	48	1.81
58391060--58391193	43	3.1	43	82	3	155	33	17	21	27	1.96
58392253--58392285	16	2.0	17	88	5	50	30	6	18	45	1.73
58398273--58398329	22	2.5	22	81	10	71	28	22	17	31	1.97
58398268--58398329	23	2.7	22	80	11	72	27	24	16	32	1.96
58402868--58402906	10	3.8	10	93	6	69	30	17	17	33	1.94
58402868--58402907	21	1.9	21	100	0	80	30	17	17	35	1.93
58406948--58407026	39	2.0	39	100	0	158	39	15	22	22	1.91
58424456--58424552	26	3.7	26	80	1	95	31	27	11	28	1.91
58424663--58424760	49	2.0	50	81	2	117	27	26	15	30	1.96
58426199--58426317	47	2.5	48	81	6	129	30	18	27	23	1.98
58429493--58429543	25	2.0	25	92	0	84	39	9	21	29	1.85
58433676--58433847	46	3.7	45	78	10	177	27	18	29	24	1.98
58433682--58433897	46	4.6	45	75	14	152	27	18	29	25	1.98
58433678--58433942	94	2.8	95	81	10	255	27	17	29	24	1.98
58433678--58433944	47	5.7	46	75	13	149	27	17	29	24	1.98
58437494--58437547	21	2.6	21	72	0	54	42	1	1	53	1.22
58437932--58438053	58	2.1	56	83	5	147	22	17	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58437932--58438085	56	2.7	58	81	5	161	25	16	16	42	1.88
58441454--58441502	26	2.0	26	92	8	84	28	0	8	63	1.23
58443492--58443841	140	2.5	139	81	7	370	52	10	13	24	1.71
58446589--58446773	79	2.3	81	84	7	236	25	22	27	24	2.00
58446590--58446773	40	4.6	40	80	9	198	25	22	27	24	2.00
58446590--58446806	79	2.7	79	81	7	192	26	22	26	24	2.00
58453613--58453780	40	4.2	40	82	8	148	27	27	20	24	1.99
58453648--58453833	80	2.3	80	83	9	229	27	27	20	23	1.99
58453650--58453833	40	4.6	40	83	7	205	27	27	21	23	1.99
58457671--58457855	79	2.3	81	84	7	236	25	22	27	24	2.00
58457671--58457855	40	4.6	41	81	7	213	25	22	27	24	2.00
58457724--58457888	79	2.1	79	80	6	183	27	21	26	24	1.99
58461964--58462151	40	4.7	40	96	0	340	21	27	20	31	1.98
58470616--58470803	40	4.7	40	96	0	340	21	27	20	31	1.98
58473368--58473518	28	5.4	28	91	1	214	25	12	28	33	1.92
58476061--58476244	27	6.8	27	86	4	201	27	24	10	37	1.88
58476061--58476244	82	2.3	81	88	4	275	27	24	10	37	1.88
58476061--58476244	55	3.4	53	89	3	262	27	24	10	37	1.88
58476223--58476391	27	6.3	27	84	3	180	40	20	8	31	1.82
58476237--58476388	81	1.9	80	88	1	232	42	19	7	29	1.80
58476380--58476619	27	8.9	27	81	6	245	36	17	20	25	1.94
58476376--58476619	54	4.5	54	85	3	305	36	18	19	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58476376--58476603	81	2.8	81	80	4	273	36	19	18	25	1.95
58476763--58476793	16	1.9	16	93	0	53	29	22	12	35	1.91
58476826--58476919	25	3.8	25	92	1	145	24	25	21	28	1.99
58476826--58476932	25	4.4	24	89	3	126	27	23	21	28	1.99
58482542--58482759	40	5.5	40	86	4	266	25	27	22	23	2.00
58484959--58485006	15	3.2	15	80	11	62	58	14	14	12	1.64
58487932--58488102	93	1.8	93	92	0	288	28	27	21	22	1.99
58487927--58488099	46	3.7	46	74	13	183	29	26	21	22	1.99
58499463--58499669	3	67.3	3	68	21	60	60	3	6	28	1.40
58500159--58500211	18	3.3	18	65	29	55	24	7	52	15	1.68
58500733--58501740	87	11.7	87	85	6	1173	19	22	20	36	1.95
58500819--58501657	43	19.6	44	67	15	287	19	22	20	37	1.95
58501743--58501990	44	5.7	43	72	10	189	27	25	15	32	1.96
58501741--58502659	132	7.1	132	89	3	1407	27	23	16	32	1.96
58502011--58502672	44	15.0	43	72	11	448	26	22	17	32	1.97
58502662--58502984	88	3.7	87	93	2	522	27	27	17	27	1.98
58502781--58502918	41	3.2	41	63	22	102	31	26	16	24	1.96
58502790--58502939	47	3.3	47	64	20	129	28	26	17	28	1.98
58504841--58504908	8	7.6	8	73	20	55	0	4	11	83	0.78
58506923--58506962	21	2.0	20	90	5	62	27	2	22	47	1.64
58508294--58508383	43	2.1	43	97	0	171	31	6	17	44	1.75
58510679--58510723	21	2.1	21	87	0	63	44	24	4	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58514000--58514038	21	1.9	20	89	5	60	25	2	25	46	1.66
58515958--58516277	48	6.7	48	75	11	271	25	29	18	26	1.98
58515968--58516290	96	3.4	96	87	0	450	26	29	18	26	1.98
58521685--58521948	40	6.7	40	86	7	310	25	27	22	25	2.00
58529799--58530062	40	6.7	40	86	7	310	25	27	22	25	2.00
58533544--58533591	21	2.3	21	96	0	87	18	22	41	16	1.90
58535144--58535391	48	5.2	48	85	0	309	29	16	27	27	1.97
58541273--58541459	48	3.9	48	89	2	277	27	20	26	25	1.99
58545873--58546044	79	2.2	79	84	3	220	25	21	27	25	1.99
58545820--58546042	40	5.6	39	81	8	209	25	21	27	25	1.99
58545900--58546067	79	2.1	80	79	4	180	25	21	27	25	1.99
58549313--58549346	9	3.7	9	96	4	59	44	0	32	23	1.54
58553665--58553834	40	4.3	39	87	5	207	25	21	27	25	1.99
58553692--58553859	79	2.1	80	79	4	180	25	21	27	25	1.99
58555296--58555517	48	4.6	48	77	5	171	26	27	18	27	1.98
58556260--58556300	21	2.0	21	85	0	55	12	34	29	24	1.91
58558784--58558808	13	1.9	13	100	0	50	8	0	16	76	1.02
58562624--58562791	47	3.6	45	75	15	171	27	18	28	25	1.98
58562617--58562788	94	1.8	94	89	2	274	27	18	29	25	1.98
58563860--58563886	13	2.1	13	100	0	54	40	22	37	0	1.54
58569345--58569493	67	2.2	66	83	8	176	30	18	30	21	1.97
58573529--58573896	94	3.9	95	74	12	319	27	19	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58573534--58573899	49	7.7	49	76	8	301	28	19	27	24	1.99
58585460--58585595	73	1.9	73	88	0	209	44	15	11	28	1.82
58594027--58594159	48	2.8	48	87	0	194	25	19	25	29	1.99
58594064--58594239	42	4.0	42	70	12	97	26	17	26	30	1.97
58596819--58596860	19	2.2	19	100	0	84	40	0	4	54	1.21
58597364--58597411	24	2.0	22	84	11	60	60	4	0	35	1.16
58597605--58597740	51	2.7	50	80	5	132	24	24	2	49	1.62
58599457--58599584	64	2.0	64	98	0	247	42	5	6	46	1.52
58600852--58600888	11	3.5	11	78	14	51	35	0	13	51	1.41
58600849--58600889	20	2.0	20	100	0	82	34	0	17	48	1.47
58605254--58605583	46	7.0	48	73	13	206	24	26	17	31	1.97
58605310--58605576	92	2.9	91	78	12	278	23	27	18	30	1.98
58605315--58605583	46	5.8	47	77	10	220	24	27	17	30	1.97
58615814--58615838	13	1.9	13	100	0	50	24	32	32	12	1.91
58617159--58617246	45	2.0	45	93	0	149	38	23	12	25	1.90
58619837--58619888	22	2.4	21	84	12	61	34	7	23	34	1.83
58623530--58623576	22	2.2	21	81	11	51	53	6	0	40	1.27
58630728--58630964	48	4.9	48	78	2	217	23	29	18	28	1.98
58631095--58631157	31	2.0	31	100	0	126	38	22	9	30	1.86
58632753--58632777	12	2.1	12	100	0	50	40	0	8	52	1.31
58639978--58640079	37	2.7	39	83	3	127	40	23	16	19	1.91
58644598--58644634	14	2.4	16	82	8	51	45	0	24	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58648564--58648663	50	2.0	50	92	0	164	34	19	19	28	1.95
58649066--58649156	40	2.3	40	94	0	155	42	12	12	32	1.79
58650693--58650761	34	2.0	34	97	0	129	30	11	10	47	1.73
58654378--58654436	28	2.1	28	100	0	118	30	10	20	38	1.86
58658062--58658096	10	3.4	11	88	11	56	68	5	0	25	1.11
58666721--58667155	229	1.9	230	93	0	746	22	28	24	23	1.99
58668304--58668545	124	2.0	124	96	0	448	29	25	16	28	1.97
58673231--58674527	650	2.0	650	98	0	2486	30	20	13	35	1.91
58675195--58675236	22	2.1	19	86	13	57	45	0	0	54	0.99
58675195--58675233	16	2.5	15	83	8	51	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316