genome.fa.s1.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  151  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47876386--47876420	18	1.9	18	88	0	52	17	25	17	40	1.90
47883575--47883697	47	2.6	45	82	13	144	26	17	30	25	1.97
47885112--47885163	26	2.0	26	100	0	104	30	7	26	34	1.85
47885450--47885527	32	2.5	32	89	4	115	37	10	12	39	1.78
47885887--47885948	25	2.5	25	84	7	74	33	20	24	20	1.97
47889221--47889266	23	2.0	23	84	12	60	45	10	4	39	1.59
47889228--47889272	23	2.0	23	82	8	56	40	13	6	40	1.71
47894024--47894126	39	2.7	38	86	1	134	50	6	2	39	1.44
47895470--47895496	14	1.9	14	100	0	54	37	25	7	29	1.83
47895631--47895697	34	1.9	35	93	3	118	47	13	4	34	1.63
47898519--47898583	29	2.2	29	78	5	78	49	0	1	49	1.10
47900822--47900888	26	2.6	26	100	0	134	22	25	25	26	2.00
47905182--47905658	171	2.8	169	86	2	650	35	15	12	37	1.85
47908500--47908594	48	2.0	47	84	10	122	56	6	3	33	1.40
47909556--47909589	17	2.1	17	88	5	52	61	0	0	38	0.96
47911456--47911507	27	2.0	26	85	7	70	42	0	0	57	0.98
47912415--47912459	21	2.1	21	100	0	90	42	11	8	37	1.72
47916927--47916952	3	8.7	3	100	0	52	30	0	0	69	0.89
47917335--47917461	7	17.6	7	68	12	51	26	2	25	45	1.65
47917262--47917457	102	1.9	102	83	8	256	25	2	25	46	1.65
47917270--47917439	51	3.3	50	70	16	134	24	2	25	47	1.66
47917421--47917533	51	2.2	51	81	7	131	27	0	27	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47917402--47917506	22	4.8	22	73	13	83	26	1	26	44	1.64
47917337--47917512	73	2.4	74	82	3	214	26	2	25	45	1.65
47917850--47918023	40	4.3	40	85	0	213	27	21	18	32	1.97
47917850--47918023	80	2.2	81	87	3	244	27	21	18	32	1.97
47929379--47929462	26	3.3	26	68	26	79	20	2	33	44	1.64
47929363--47929462	51	2.0	51	97	0	191	20	3	32	45	1.66
47939356--47939482	46	2.7	47	83	10	172	28	18	28	24	1.98
47943982--47944075	10	9.7	10	71	17	56	58	2	2	37	1.22
47944042--47944120	19	4.2	20	70	16	78	60	1	5	32	1.26
47943998--47944073	9	8.1	9	71	12	55	57	2	2	36	1.26
47944037--47944166	29	4.6	29	71	18	94	56	0	6	36	1.30
47943982--47944120	57	2.4	56	80	11	147	58	2	3	35	1.27
47944112--47944166	21	2.6	21	82	5	67	52	0	9	38	1.33
47945649--47945691	22	1.9	23	90	4	70	25	4	4	65	1.32
47947452--47947623	93	1.8	93	94	0	308	27	30	21	20	1.98
47947445--47947620	46	3.8	46	80	10	205	28	30	21	20	1.98
47947453--47947639	46	4.0	46	72	19	138	27	29	20	21	1.98
47950009--47950088	15	5.4	15	75	7	74	57	13	17	11	1.65
47950020--47950097	15	5.2	15	74	9	61	55	15	16	12	1.70
47953016--47953193	46	3.8	46	80	4	214	28	29	21	21	1.98
47953023--47953194	93	1.8	93	93	0	299	27	29	21	21	1.99
47955083--47955147	33	2.0	33	81	0	76	38	20	20	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47957669--47957746	18	4.3	18	78	0	66	32	35	16	15	1.90
47959500--47959724	81	2.8	80	79	5	193	41	22	20	16	1.90
47959539--47959733	81	2.4	80	79	7	214	44	18	20	16	1.87
47960387--47960457	35	2.0	35	100	0	142	54	14	2	28	1.53
47960403--47960459	18	3.2	18	66	14	55	57	14	3	24	1.52
47968533--47968606	29	2.6	29	86	4	96	27	16	31	25	1.96
47970412--47970629	40	5.5	40	92	2	334	24	27	23	23	2.00
47977648--47977677	14	2.1	14	93	0	51	46	36	0	16	1.47
47979624--47979856	49	4.7	50	78	4	247	26	18	26	28	1.98
47979631--47979866	101	2.4	98	80	9	255	26	17	26	29	1.98
47993659--47993718	30	2.0	30	100	0	120	26	16	26	30	1.97
48001564--48001627	33	1.9	33	90	0	101	35	14	20	29	1.92
48001783--48001837	27	2.0	27	96	0	101	41	12	14	30	1.83
48003220--48003283	33	1.9	33	87	0	92	34	14	20	31	1.92
48003439--48003492	27	2.0	27	96	0	99	40	12	14	31	1.84
48017653--48018622	483	2.0	485	89	2	1504	33	20	13	33	1.91
48019130--48019181	26	2.0	26	100	0	104	19	30	26	23	1.98
48020344--48020368	9	2.8	9	100	0	50	36	12	0	52	1.39
48023153--48023419	48	5.6	48	75	11	174	28	26	19	25	1.99
48030868--48030914	24	2.0	24	83	8	60	42	2	10	44	1.51
48032501--48032561	20	2.9	22	81	13	83	73	4	1	19	1.10
48033990--48034025	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48038684--48038726	23	2.0	23	86	9	63	44	0	23	32	1.54
48039384--48039433	23	2.2	23	82	7	57	18	20	14	48	1.82
48040134--48040171	20	1.9	20	89	10	60	42	0	2	55	1.14
48040182--48040218	18	1.9	18	89	10	56	54	0	5	40	1.24
48040476--48040528	18	2.8	18	77	5	52	52	0	1	45	1.11
48040983--48041022	13	2.9	14	85	7	55	62	2	10	25	1.39
48051510--48051570	30	2.0	30	100	0	122	37	0	26	36	1.57
48054263--48054296	5	6.8	5	100	0	68	58	0	0	41	0.98
48054785--48054841	23	2.3	26	88	8	84	42	0	0	57	0.98
48054795--48054835	18	2.3	19	79	8	50	46	0	0	53	1.00
48057976--48058003	14	2.0	14	100	0	56	71	0	14	14	1.15
48064135--48064183	25	2.0	25	83	0	62	46	22	2	28	1.63
48065449--48065483	16	2.1	17	89	5	54	17	11	0	71	1.14
48066857--48066890	8	4.4	8	88	7	52	38	0	0	61	0.96
48066858--48066900	7	5.9	7	81	8	50	39	0	2	58	1.11
48071089--48071138	19	2.6	19	93	0	91	16	40	22	22	1.91
48072957--48073280	48	6.8	48	85	1	400	26	29	16	27	1.97
48072957--48073280	96	3.4	96	86	1	445	26	29	16	27	1.97
48074511--48074682	46	3.7	46	83	9	183	27	19	31	21	1.97
48078288--48078332	23	1.9	24	86	4	65	20	24	13	42	1.87
48078458--48078655	55	3.7	54	79	10	210	22	24	17	35	1.95
48081563--48081615	21	2.5	21	87	0	70	16	32	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48081577--48081621	21	2.1	21	91	0	72	15	33	26	24	1.95
48111844--48111902	27	2.2	26	85	11	75	30	25	23	20	1.98
48115374--48115435	30	2.1	30	84	0	79	38	6	25	29	1.81
48116164--48116335	67	2.7	63	76	9	175	29	16	29	25	1.96
48117570--48117632	31	2.0	31	100	0	126	31	6	26	34	1.82
48118610--48118669	31	1.9	31	89	0	93	26	21	15	36	1.93
48118862--48119007	25	6.0	24	88	5	188	27	21	21	30	1.98
48119056--48119102	20	2.3	20	96	0	85	34	21	10	34	1.88
48130274--48130334	30	2.0	30	87	0	86	37	8	24	29	1.84
48131069--48131240	67	2.7	64	76	6	193	29	16	29	24	1.97
48133592--48133714	46	2.7	44	90	7	176	22	29	20	27	1.98
48133592--48133811	46	4.7	46	78	9	166	23	29	19	27	1.98
48133592--48133816	94	2.4	92	79	10	219	24	29	19	27	1.98
48135608--48135854	55	4.7	52	78	12	229	36	17	23	21	1.94
48135615--48135815	108	1.8	110	88	6	311	35	17	24	22	1.95
48143059--48143266	55	3.8	53	77	8	215	34	16	25	24	1.95
48143066--48143266	108	1.8	110	86	4	291	33	16	24	24	1.96
48148856--48148953	41	2.4	41	82	0	133	28	23	32	15	1.95
48153392--48153556	80	2.1	79	82	3	197	27	19	24	27	1.99
48153365--48153556	40	4.8	40	75	9	162	28	20	23	27	1.99
48154714--48154747	13	2.6	13	90	0	50	64	11	5	17	1.45
48157214--48157317	42	2.4	43	85	6	140	29	18	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48157182--48157334	43	3.6	43	75	7	132	29	17	22	30	1.97
48157670--48157695	13	2.0	13	100	0	52	15	30	38	15	1.88
48162728--48162899	46	3.7	46	79	13	199	20	20	28	30	1.98
48162725--48162895	93	1.8	93	91	0	279	21	20	29	29	1.98
48163124--48163161	19	2.0	20	85	15	53	36	0	23	39	1.55
48169174--48169198	13	1.9	13	100	0	50	32	20	16	32	1.94
48169746--48169923	27	6.6	26	82	6	178	26	15	27	29	1.96
48169747--48169902	82	1.9	81	87	6	226	26	16	27	29	1.96
48169743--48169923	82	2.2	81	82	4	222	27	16	27	29	1.96
48169828--48169934	27	3.9	27	77	10	74	27	14	27	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316