Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  14  of  316  ( 37835 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4263108--4263169
30
2.1
30
93
3
90
58
11
3
27
1.48
4263715--4263761
19
2.6
19
81
15
55
65
2
0
31
1.04
4269108--4269159
22
2.7
20
75
18
56
69
9
1
19
1.26
4272273--4272340
27
2.4
29
80
7
77
16
33
8
41
1.79
4272990--4273023
17
2.0
17
88
0
50
61
0
2
35
1.11
4273320--4273419
28
3.6
27
76
14
98
31
3
1
65
1.15
4273525--4273686
85
1.9
82
81
10
193
31
9
20
38
1.85
4276161--4276186
13
2.0
13
100
0
52
38
46
0
15
1.46
4276664--4276701
10
3.8
10
86
6
51
23
5
0
71
1.07
4276717--4276757
21
2.0
21
90
9
66
36
0
0
63
0.95
4283204--4283330
64
2.0
64
92
0
209
29
19
15
35
1.93
4283435--4283678
133
1.8
134
86
4
359
28
19
20
32
1.96
4283442--4283718
133
2.1
133
81
6
321
29
18
21
31
1.97
4283533--4284196
355
1.9
355
90
1
1053
29
18
22
29
1.97
4283533--4284196
178
3.7
178
91
1
1021
29
18
22
29
1.97
4284068--4284464
134
3.0
134
92
0
632
30
17
21
30
1.96
4283709--4284640
311
3.0
311
76
10
1065
29
18
21
29
1.97
4284335--4284708
177
2.1
178
82
4
443
30
18
21
29
1.97
4284913--4284947
17
2.1
17
94
0
61
31
54
0
14
1.40
4284965--4284990
13
2.0
13
100
0
52
38
46
0
15
1.46
4285519--4285561
22
2.0
22
86
9
61
34
0
0
65
0.93
4292643--4292688
23
2.0
23
84
12
60
45
10
6
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4292650--4292699
23
2.2
22
82
10
57
40
14
8
38
1.75
4296075--4296113
6
6.5
6
96
0
69
46
15
20
17
1.84
4297344--4297386
14
3.0
14
80
16
52
51
2
0
46
1.13
4299884--4300126
132
1.8
132
87
3
364
38
18
16
26
1.92
4323654--4323714
27
2.3
26
83
8
77
29
3
4
62
1.32
4331247--4331289
17
2.6
16
76
16
52
44
6
0
48
1.29
4331227--4331289
32
1.9
33
87
3
92
42
7
1
47
1.42
4331232--4331286
16
3.4
17
73
16
53
43
9
1
45
1.46
4336236--4336296
19
3.0
19
74
11
59
67
3
3
26
1.22
4336236--4336294
20
2.8
20
75
14
66
67
3
3
25
1.21
4344089--4344131
11
3.9
11
76
11
52
46
0
0
53
1.00
4344762--4344813
23
2.3
23
86
0
68
28
1
1
67
1.12
4353773--4354304
266
2.0
266
96
0
974
33
18
25
23
1.97
4359280--4359682
132
3.1
132
94
0
675
28
16
26
28
1.97
4359253--4359678
44
9.8
45
76
7
387
28
16
25
29
1.97
4359834--4360149
40
7.8
40
77
10
309
31
25
20
22
1.98
4359835--4360165
82
4.0
82
87
4
452
32
25
19
22
1.97
4369753--4369799
21
2.2
22
92
3
78
21
19
38
21
1.94
4386754--4386820
5
12.8
5
77
17
57
77
0
2
19
0.89
4386761--4386822
23
2.6
24
76
16
67
77
0
4
17
0.94
4393951--4394160
104
2.0
104
100
0
420
31
19
16
33
1.93
4396003--4396029
13
2.1
13
100
0
54
29
18
7
44
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4404420--4404474
21
2.7
20
82
5
65
41
21
9
27
1.83
4404420--4404474
20
2.7
21
85
5
76
41
21
9
27
1.83
4407060--4407092
13
2.5
13
95
0
57
63
3
0
33
1.10
4407063--4407101
18
2.0
20
85
9
55
61
2
0
35
1.10
4408397--4408449
21
2.5
22
81
12
65
32
1
5
60
1.31
4409151--4409221
36
2.0
36
91
0
115
50
5
9
33
1.59
4409228--4409271
20
2.2
20
83
0
52
43
2
2
52
1.26
4413050--4413092
15
2.7
15
78
7
50
65
0
0
34
0.93
4413042--4413087
24
2.0
24
86
4
67
65
0
0
34
0.93
4420658--4420690
15
2.3
15
90
10
52
60
0
0
39
0.97
4437830--4438066
73
3.2
72
84
8
314
29
17
18
33
1.95
4438046--4438080
14
2.5
14
95
0
61
20
20
2
57
1.54
4437992--4438154
89
1.8
88
90
1
263
30
17
19
33
1.95
4438060--4438382
75
4.3
76
82
5
379
30
17
18
33
1.95
4438075--4438371
153
2.0
147
86
5
416
30
17
20
31
1.96
4438419--4438475
29
2.0
29
86
6
80
21
19
33
26
1.97
4440113--4440160
25
2.0
24
87
4
69
33
4
2
60
1.27
4440327--4440356
9
3.3
9
90
0
51
40
0
0
60
0.97
4440620--4440675
21
2.6
21
86
10
78
26
7
1
64
1.29
4440701--4440744
3
14.7
3
100
0
88
31
0
0
68
0.90
4440765--4440805
21
2.0
21
90
0
64
39
4
2
53
1.35
4440954--4441042
39
2.2
39
82
9
99
30
2
10
57
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4441007--4441041
17
2.1
16
89
5
52
37
0
8
54
1.31
4445183--4445220
20
1.9
20
100
0
76
31
5
31
31
1.80
4447364--4447391
6
4.7
6
100
0
56
50
17
0
32
1.47
4457999--4458041
22
2.0
21
82
17
52
44
20
0
34
1.52
4458440--4458646
35
6.0
35
85
4
267
35
22
13
28
1.92
4458452--4458646
69
2.8
69
89
1
284
36
23
12
28
1.91
4460299--4460342
6
7.2
6
92
2
70
2
61
0
36
1.09
4460397--4460450
25
2.1
26
86
3
74
3
33
3
59
1.33
4460658--4460715
29
2.0
29
100
0
116
31
10
10
48
1.71
4462544--4462568
11
2.3
11
100
0
50
56
28
8
8
1.57
4463870--4463930
31
2.0
31
83
6
79
36
18
6
39
1.76
4475779--4475829
3
17.3
3
75
4
50
33
1
3
60
1.26
4475954--4475980
3
9.0
3
100
0
54
33
0
0
66
0.92
4487194--4488046
132
6.5
132
95
1
1359
28
16
25
28
1.97
4487204--4488046
44
19.1
45
73
8
446
28
16
25
29
1.97
4489651--4489701
3
17.3
3
75
4
50
35
1
1
60
1.19
4489826--4489858
3
11.0
3
100
0
66
33
0
0
66
0.92
4492827--4492932
53
2.0
53
98
0
203
48
20
14
16
1.81
4499255--4499931
226
3.0
226
94
1
1140
35
11
16
36
1.85
4499959--4500017
31
1.9
31
96
0
109
37
10
10
42
1.73
4503857--4503889
15
2.2
15
94
0
57
39
6
15
39
1.72
4511877--4511956
42
1.9
42
97
0
151
52
7
13
26
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4514365--4514430
35
2.0
32
82
11
80
39
10
4
45
1.59
4524217--4524288
19
3.8
19
66
14
51
61
2
0
36
1.11
4525096--4525144
21
2.3
21
89
0
71
32
26
20
20
1.97
4526550--4526614
24
2.7
24
81
9
62
26
13
20
40
1.89
4527875--4527917
5
8.8
5
94
5
79
81
0
0
18
0.69
4527875--4527916
14
2.9
14
96
3
75
80
0
0
19
0.70
4527875--4527917
19
2.2
20
95
4
79
81
0
0
18
0.69
4531958--4532028
16
4.4
16
87
0
97
36
7
25
30
1.83
4531957--4532028
32
2.2
32
90
0
117
37
6
25
30
1.82
4532014--4532103
44
2.0
46
89
8
141
32
5
26
35
1.80
4532182--4532232
26
2.0
25
88
3
75
45
0
3
50
1.20
4532193--4532371
58
3.1
58
76
11
134
53
3
1
41
1.27
4532340--4532382
21
2.0
21
86
9
59
62
2
0
34
1.08
4535718--4535750
17
1.9
17
88
11
50
69
0
21
9
1.15
4537723--4537763
5
7.8
5
84
10
55
80
2
2
14
0.92
4537721--4537763
22
2.0
21
90
4
68
79
2
2
16
0.95
4539575--4539602
12
2.3
12
100
0
56
25
14
0
60
1.34
4540882--4540922
6
7.2
6
91
8
68
82
0
0
17
0.66
4540882--4540922
11
3.6
11
93
6
73
82
0
0
17
0.66
4540882--4540922
17
2.4
17
92
8
66
82
0
0
17
0.66
4542577--4542611
18
1.9
18
88
0
52
42
2
11
42
1.55
4554159--4554208
24
2.1
23
82
14
57
44
2
0
54
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4554152--4554224
34
2.3
29
78
19
76
38
1
0
60
1.06
4554233--4554276
22
2.0
22
86
0
61
52
0
0
47
1.00
4554345--4554418
32
2.5
31
80
10
84
51
4
0
44
1.20
4554823--4554856
17
1.9
17
88
5
50
35
0
0
64
0.94
4554901--4554937
10
3.5
11
82
10
51
32
0
5
62
1.18
4554897--4554954
25
2.3
26
80
11
77
34
0
5
60
1.19
4554922--4554950
14
2.0
15
93
6
51
31
0
6
62
1.22
4555115--4555203
40
2.2
40
79
16
105
29
7
1
61
1.31
4561068--4561236
46
3.7
46
76
13
184
23
18
28
29
1.98
4561065--4561234
93
1.8
93
92
0
286
22
18
28
29
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316