genome.fa.s1.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  101  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31392348--31392394	5	9.6	5	95	4	87	80	0	0	19	0.70
31393113--31393172	6	10.0	6	87	7	50	55	18	6	20	1.65
31393132--31393182	18	2.8	18	77	11	59	52	23	7	15	1.68
31397144--31397200	30	1.9	30	96	0	105	40	3	36	19	1.69
31398532--31398743	111	1.9	111	82	1	264	51	17	9	21	1.74
31408307--31408407	41	2.5	41	98	0	193	27	26	23	21	1.99
31415437--31415472	18	2.0	18	100	0	72	22	16	27	33	1.95
31417579--31417841	40	6.6	39	82	6	226	25	20	27	25	1.99
31417699--31417876	79	2.2	80	81	2	198	24	21	28	24	1.99
31426044--31426270	40	5.7	40	95	0	409	29	20	28	22	1.98
31429460--31429722	40	6.6	39	82	6	226	25	20	27	25	1.99
31429580--31429757	79	2.2	80	81	2	198	24	21	28	24	1.99
31435402--31435453	24	2.2	24	79	3	61	28	30	13	26	1.94
31435420--31435465	24	1.9	24	86	0	65	28	32	13	26	1.93
31436030--31436093	18	3.6	17	75	8	56	20	14	25	40	1.89
31438078--31438189	43	2.6	42	85	1	143	33	33	13	20	1.91
31440388--31440505	42	2.8	42	85	5	166	29	23	18	27	1.98
31440824--31440856	13	2.6	13	90	4	50	48	12	0	39	1.40
31448984--31449016	13	2.6	13	90	4	50	42	12	6	39	1.67
31454533--31454681	63	2.3	63	81	10	174	24	25	16	33	1.96
31457070--31457241	46	3.7	46	78	7	152	23	28	21	26	1.99
31457113--31457240	47	2.7	47	79	14	133	23	28	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31459471--31459655	40	4.7	40	80	7	200	24	22	27	25	2.00
31459525--31459688	79	2.1	79	84	6	208	26	20	26	26	1.99
31474340--31474420	34	2.3	34	78	4	90	27	23	28	20	1.99
31477863--31477944	39	2.1	39	93	0	137	23	30	24	21	1.99
31481094--31481194	17	5.5	17	69	20	62	67	2	26	2	1.19
31481152--31481201	21	2.4	22	71	21	54	68	0	32	0	0.90
31482850--31482878	1	29.0	1	100	0	58	0	0	0	100	0.00
31484183--31484490	40	7.7	40	96	0	535	21	26	20	30	1.98
31496618--31496703	27	3.3	27	64	26	76	36	4	15	44	1.67
31496930--31497102	46	3.8	46	75	6	172	23	19	28	28	1.98
31497652--31497715	33	1.9	33	100	0	128	28	12	18	40	1.87
31500281--31500398	46	2.6	44	80	9	121	29	19	26	24	1.98
31523954--31524003	26	1.9	26	91	0	82	58	2	8	32	1.39
31524532--31524662	43	3.0	43	77	8	115	24	16	26	32	1.96
31524827--31524877	21	2.4	21	96	0	93	37	17	29	15	1.91
31524853--31524911	29	2.0	29	96	0	109	42	16	27	13	1.86
31526172--31526276	47	2.2	47	96	0	192	27	30	7	34	1.85
31526895--31526934	20	2.0	21	85	5	55	40	5	5	50	1.46
31527406--31527540	40	3.4	39	81	5	137	39	22	17	20	1.93
31527580--31527774	41	4.8	41	94	0	327	19	23	27	29	1.98
31528061--31528110	14	3.6	14	74	15	50	22	0	40	38	1.54
31528047--31528107	28	2.2	27	85	5	77	19	0	36	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31528077--31528129	21	2.5	22	81	9	65	20	0	39	39	1.53
31528109--31528137	15	1.9	15	100	0	58	13	0	51	34	1.42
31528372--31528429	28	2.1	28	87	6	82	24	0	41	34	1.55
31529433--31529471	21	1.9	20	89	5	60	28	38	5	28	1.78
31532862--31533043	42	4.3	43	78	9	187	21	17	29	32	1.96
31541976--31542051	37	2.1	37	83	14	95	43	22	7	26	1.80
31545864--31545985	46	2.6	47	84	5	147	26	22	14	36	1.93
31555112--31555178	34	2.0	34	90	0	107	28	8	19	43	1.81
31560642--31560742	53	1.9	53	85	0	139	34	20	25	18	1.96
31564718--31564859	53	2.6	53	80	2	149	36	18	23	21	1.95
31567659--31567755	48	2.0	48	93	0	167	20	26	13	39	1.90
31577586--31577655	27	2.6	27	81	4	88	37	12	17	32	1.87
31578006--31578084	27	3.0	27	79	1	79	22	21	17	37	1.94
31579538--31579731	24	8.0	24	87	4	273	27	22	21	29	1.99
31579781--31579847	20	3.3	20	93	0	116	32	20	11	34	1.90
31579781--31579836	11	5.5	11	71	16	57	32	19	12	35	1.89
31580192--31580232	17	2.4	17	95	0	73	19	34	31	14	1.92
31581058--31581293	27	8.7	27	78	5	163	31	9	19	40	1.83
31581170--31581326	54	2.9	54	80	3	165	29	10	19	40	1.85
31581325--31581522	27	7.3	27	87	2	254	38	8	24	28	1.84
31581325--31581522	81	2.4	81	90	1	308	38	8	24	28	1.84
31595271--31595525	39	6.5	39	90	1	368	31	28	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31602909--31603127	45	4.9	45	91	2	311	25	28	22	22	1.99
31605615--31605689	37	2.0	37	94	0	132	20	14	20	45	1.85
31605619--31605681	20	3.3	20	69	13	69	20	15	15	47	1.82
31605630--31605689	17	3.4	17	73	13	57	20	16	18	45	1.86
31609840--31609868	10	2.9	10	100	0	58	10	41	10	37	1.73
31613252--31613415	46	3.5	46	73	15	140	21	17	29	31	1.96
31622144--31622187	6	7.3	6	85	10	63	81	0	2	15	0.78
31622133--31622187	18	3.1	17	82	10	65	80	0	5	14	0.89
31624551--31624812	40	6.6	40	77	5	239	25	23	26	24	2.00
31624551--31624812	80	3.3	80	81	3	296	25	23	26	24	2.00
31624551--31624775	120	1.9	121	84	2	310	24	23	27	24	2.00
31632731--31632955	40	5.6	40	82	4	265	26	24	26	23	2.00
31632731--31632991	80	3.3	80	81	4	287	26	23	25	24	2.00
31632731--31632991	120	2.2	120	81	7	300	26	23	25	24	2.00
31636497--31636668	79	2.2	79	84	3	220	25	21	27	25	1.99
31636444--31636666	40	5.6	39	81	8	209	25	21	27	25	1.99
31657814--31657991	27	6.6	27	85	3	214	30	28	14	26	1.95
31657835--31657990	82	1.9	81	89	3	242	30	28	14	26	1.95
31663252--31663429	27	6.6	27	85	3	214	30	28	14	26	1.95
31663273--31663428	82	1.9	81	89	3	242	30	28	14	26	1.95
31669478--31669553	22	3.5	22	78	1	82	14	31	25	28	1.95
31671697--31671741	18	2.4	18	88	3	63	37	4	35	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31671710--31671749	18	2.2	18	86	0	53	32	7	32	27	1.85
31672199--31672235	17	2.2	17	95	0	65	24	18	8	48	1.75
31677976--31678103	28	4.5	28	86	2	166	28	12	25	33	1.92
31677976--31678103	57	2.2	57	87	2	177	28	12	25	33	1.92
31692848--31692973	63	2.0	63	100	0	252	26	9	17	46	1.79
31695163--31695245	31	2.7	31	94	3	143	28	26	15	28	1.96
31695458--31695507	25	2.0	25	88	3	75	28	18	22	32	1.97
31695465--31695532	25	2.7	25	83	0	73	25	23	26	25	2.00
31696418--31696499	27	2.9	28	80	10	96	36	7	14	41	1.74
31696501--31696604	27	3.9	27	80	6	104	27	10	22	39	1.87
31696476--31696600	54	2.3	54	83	0	142	28	8	22	41	1.82
31696505--31696619	27	4.3	27	77	8	92	26	11	22	40	1.87
31696620--31696706	27	3.3	26	84	7	86	41	10	20	27	1.85
31696632--31696723	27	3.4	27	90	0	130	41	9	22	26	1.85
31698926--31699143	40	5.5	40	86	4	257	22	23	27	25	2.00
31702622--31702698	25	3.1	25	83	1	75	24	19	23	32	1.97
31702629--31702688	25	2.4	25	88	0	84	26	21	28	23	1.99
31703579--31703712	27	4.9	27	75	12	85	32	6	17	43	1.75
31703642--31703764	26	4.6	27	73	13	85	29	7	19	43	1.78
31703663--31703797	27	5.1	26	74	10	78	30	11	19	39	1.86
31703644--31703797	80	1.9	80	84	7	206	29	9	18	42	1.82
31703796--31703887	27	3.4	27	89	0	130	41	7	22	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31703654--31703833	80	2.2	80	76	7	186	30	10	20	38	1.85
31706665--31706781	46	2.5	46	90	0	180	30	19	26	23	1.98
31706659--31706791	46	2.9	45	85	4	176	30	19	27	22	1.98
31707615--31707654	21	2.0	20	85	5	53	12	35	25	27	1.92
31713468--31713784	47	6.7	47	94	0	519	31	9	30	28	1.88
31713903--31713981	37	2.1	37	83	0	95	25	20	27	26	1.99
31715982--31716006	13	1.9	13	100	0	50	16	24	40	20	1.91
31728491--31728535	24	1.9	23	86	13	65	33	8	24	33	1.86
31732684--31732716	11	3.0	11	95	0	57	39	0	0	60	0.97
31740231--31740400	46	3.7	46	76	7	141	26	20	29	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316