genome.fa.s1.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  312  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102238603--102238708	34	3.1	34	82	10	126	24	22	33	19	1.97
102244034--102244078	21	2.1	21	83	0	54	44	15	20	20	1.87
102254875--102254920	23	2.0	23	82	0	56	17	17	17	47	1.83
102260170--102260216	21	2.2	22	92	3	78	21	19	38	21	1.94
102268525--102268586	7	8.9	7	78	15	58	20	3	0	75	0.94
102268522--102268596	27	2.7	27	80	19	84	20	4	0	76	0.95
102268524--102268598	37	2.1	34	87	7	105	21	2	0	76	0.92
102268524--102268598	10	6.9	10	74	17	53	21	2	0	76	0.92
102268705--102268809	42	2.5	42	85	0	129	28	34	11	25	1.91
102276558--102276641	44	1.9	44	95	0	150	36	21	11	29	1.89
102277817--102277853	19	2.0	19	89	5	58	54	0	5	40	1.24
102278570--102278594	13	1.9	13	100	0	50	28	0	0	72	0.86
102279429--102279473	23	2.0	23	81	0	54	57	2	2	37	1.23
102279486--102279520	13	2.7	13	86	0	52	68	0	0	31	0.90
102288920--102288969	19	2.5	20	90	3	75	38	2	10	50	1.48
102299590--102299631	16	2.6	16	77	11	50	35	11	7	45	1.69
102301753--102301794	18	2.2	20	87	8	61	33	21	2	42	1.66
102306912--102306959	15	3.3	15	77	13	55	39	2	10	47	1.49
102307592--102307632	19	2.2	19	87	12	59	46	0	24	29	1.53
102309971--102310134	84	2.0	82	95	2	292	32	14	15	37	1.88
102337339--102337379	19	2.2	19	87	12	59	46	0	24	29	1.53
102339626--102339782	83	1.9	79	91	5	251	29	14	16	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102355951--102355995	22	2.0	23	86	4	65	46	2	4	46	1.35
102358341--102358400	29	2.1	29	100	0	120	20	26	6	46	1.75
102367564--102367624	28	2.0	29	84	12	79	37	14	9	37	1.80
102373329--102373392	26	2.5	26	87	5	85	42	14	10	32	1.80
102374611--102374656	22	2.1	22	96	4	85	19	4	4	71	1.20
102374617--102374664	22	2.2	22	88	3	71	27	4	4	64	1.30
102376122--102376168	11	4.4	11	75	5	51	63	12	8	14	1.50
102383898--102383957	25	2.4	25	100	0	120	43	16	0	40	1.48
102391390--102391417	5	5.6	5	100	0	56	78	0	21	0	0.75
102392461--102392526	21	3.2	20	76	6	78	60	1	4	33	1.26
102392461--102392541	42	2.0	41	82	7	101	62	2	4	29	1.29
102392624--102392661	19	2.0	19	89	0	58	50	5	5	39	1.48
102392624--102392689	20	3.3	20	80	2	71	46	3	3	46	1.33
102392857--102392900	22	2.0	23	81	4	54	31	2	9	56	1.43
102393161--102393235	36	2.1	36	97	0	141	34	17	8	40	1.79
102394690--102394728	14	2.9	13	80	3	51	48	2	0	48	1.15
102398155--102398189	17	2.1	17	100	0	70	28	22	11	37	1.89
102413063--102413091	12	2.5	12	94	5	51	37	0	20	41	1.53
102416532--102416615	12	6.8	12	80	9	80	59	2	8	29	1.39
102416532--102416616	3	28.3	3	74	9	66	60	2	8	29	1.39
102434771--102434854	42	2.0	42	97	0	159	11	13	14	60	1.59
102442614--102442652	17	2.2	19	86	9	55	41	12	0	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102449958--102450039	31	2.7	31	80	14	84	41	9	8	40	1.69
102451304--102451344	21	1.9	22	95	5	75	26	2	14	56	1.51
102454384--102454434	3	17.3	3	75	4	50	33	1	3	60	1.26
102454558--102454584	3	9.0	3	100	0	54	33	0	0	66	0.92
102466572--102467861	132	9.8	132	94	0	2190	27	17	25	29	1.97
102469594--102469645	3	17.7	3	76	4	52	34	1	3	59	1.27
102469766--102469795	3	10.0	3	100	0	60	33	0	0	66	0.92
102472707--102472769	30	2.1	30	88	2	92	50	6	6	36	1.53
102473509--102473666	78	2.0	78	91	2	255	36	19	10	34	1.86
102490050--102490092	16	2.5	16	81	11	50	30	0	11	58	1.34
102491076--102491126	24	2.1	25	88	3	77	43	17	3	35	1.68
102499597--102499654	26	2.3	26	82	11	75	37	1	0	60	1.07
102499678--102499721	22	2.0	22	86	0	61	52	0	0	47	1.00
102499898--102499942	23	1.9	24	81	4	56	24	15	6	53	1.66
102503300--102503329	13	2.2	14	94	5	53	60	0	3	36	1.14
102503491--102503541	26	2.0	25	84	7	66	47	0	7	45	1.32
102507742--102507797	29	1.9	29	85	0	76	37	14	7	41	1.73
102507981--102508045	29	2.2	29	83	2	76	38	7	12	41	1.71
102511614--102511656	19	2.2	20	83	4	52	51	0	2	46	1.13
102530801--102530857	24	2.3	26	79	11	66	54	3	0	42	1.17
102531049--102531184	69	2.0	69	94	0	236	54	14	10	20	1.69
102536380--102536407	13	2.2	13	100	0	56	21	17	7	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102536730--102536763	11	3.0	11	87	8	50	17	0	5	76	0.98
102540796--102540829	16	2.1	16	88	0	50	52	20	0	26	1.46
102543886--102543952	18	3.9	18	71	15	61	49	0	5	44	1.27
102543926--102543968	21	2.1	20	82	4	50	48	0	2	48	1.14
102544941--102544989	23	2.1	23	88	0	71	48	14	12	24	1.77
102547721--102547848	39	3.3	39	93	0	220	15	25	21	37	1.93
102549945--102549989	22	2.0	22	91	0	72	31	2	6	60	1.35
102554000--102554282	18	15.3	18	70	11	151	36	15	12	35	1.85
102554000--102554282	36	7.6	36	70	12	187	36	15	12	35	1.85
102554081--102554282	72	2.8	71	80	5	219	37	15	11	35	1.85
102554387--102554423	6	6.2	6	96	0	65	48	16	18	16	1.81
102554462--102554650	45	4.2	45	90	0	279	40	20	19	19	1.91
102555061--102555094	5	6.8	5	89	0	50	26	32	0	41	1.56
102555060--102555094	10	3.5	10	92	0	61	28	31	0	40	1.57
102555060--102555096	15	2.5	15	86	0	56	32	29	0	37	1.58
102568223--102568265	20	2.1	21	86	4	61	41	0	0	58	0.98
102568800--102568829	15	1.9	16	93	6	53	73	0	3	23	0.98
102568800--102568830	16	1.9	16	93	0	53	74	0	3	22	0.96
102570024--102570076	16	3.2	16	91	2	88	24	1	37	35	1.67
102570295--102573197	120	24.2	120	99	0	5637	47	6	2	44	1.40
102571018--102571203	54	3.2	54	65	21	133	47	5	1	45	1.35
102579738--102579816	36	2.2	36	95	0	140	54	12	24	8	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102582139--102582178	21	2.0	20	85	14	55	37	0	10	52	1.35
102591719--102591752	15	2.2	16	89	5	52	67	2	2	26	1.19
102593036--102593113	35	2.2	35	82	6	95	47	17	10	24	1.79
102596805--102596837	16	2.1	16	88	5	50	42	0	3	54	1.15
102609680--102609712	14	2.4	14	94	0	57	48	6	3	42	1.43
102615575--102615635	31	2.0	31	93	0	104	54	19	1	24	1.54
102615932--102615976	23	2.0	23	87	12	67	44	26	8	20	1.80
102616613--102616692	31	2.6	30	86	6	97	57	8	0	33	1.30
102616622--102616661	18	2.2	19	86	8	57	60	10	0	30	1.30
102617463--102617495	14	2.4	14	94	0	57	69	6	0	24	1.10
102617466--102617521	22	2.5	22	76	0	67	67	10	1	19	1.29
102629829--102629890	29	2.1	29	100	0	124	37	19	12	30	1.89
102633696--102633730	2	18.0	2	88	5	54	45	0	2	51	1.16
102640918--102640955	18	2.1	18	90	0	58	39	10	28	21	1.86
102652963--102652995	16	2.1	16	100	0	66	51	18	6	24	1.68
102654680--102654716	16	2.3	16	100	0	74	27	16	21	35	1.94
102679592--102679652	27	2.2	27	82	8	70	45	1	1	50	1.21
102681428--102681502	24	3.1	24	86	5	89	52	13	2	32	1.54
102697244--102697315	19	3.7	19	90	3	108	34	1	8	55	1.39
102699607--102699670	31	2.0	32	85	11	87	42	12	9	35	1.75
102701780--102701806	12	2.2	12	100	0	54	48	14	0	37	1.45
102712432--102712461	13	2.2	14	94	5	53	20	10	30	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102714119--102714143	13	1.9	13	100	0	50	48	20	16	16	1.82
102722679--102722717	20	1.9	20	84	5	51	35	2	5	56	1.35
102724073--102724118	24	1.9	24	81	0	56	10	4	10	73	1.22
102723741--102724638	198	4.6	196	83	4	871	25	8	21	44	1.79
102729524--102729576	16	3.4	15	82	7	61	35	1	0	62	1.06
102735601--102735637	17	2.2	17	90	0	56	48	0	0	51	1.00
102737940--102737994	23	2.5	22	77	11	58	40	1	12	45	1.53
102738832--102738863	15	2.1	15	94	0	55	21	31	40	6	1.78
102741775--102741802	6	4.7	6	100	0	56	67	0	14	17	1.22
102747552--102747704	76	2.0	76	97	0	288	33	16	13	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316