genome.fa.s1.2.7.7.80.10.50.1000.303.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  303  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99792452--99792492	17	2.4	17	91	0	64	19	43	2	34	1.64
99797298--99797356	11	5.4	10	78	11	55	37	47	1	13	1.53
99797298--99797356	22	2.7	22	83	0	82	37	47	1	13	1.53
99797674--99797707	12	2.8	12	95	0	59	38	0	32	29	1.58
99803603--99803728	48	2.5	51	91	8	204	30	26	19	23	1.98
99805936--99806007	19	3.1	24	77	18	82	36	19	6	37	1.79
99805959--99806021	19	3.3	19	93	0	108	36	19	7	36	1.81
99811094--99811151	22	2.6	22	80	0	80	24	22	27	25	2.00
99813196--99813265	27	2.6	27	95	2	113	31	28	12	27	1.93
99813196--99813293	28	3.5	28	90	2	135	31	28	13	26	1.94
99818755--99818793	20	2.0	20	85	5	53	41	10	5	43	1.61
99823678--99823712	15	2.3	15	95	0	61	34	14	20	31	1.92
99824763--99824811	22	2.2	22	81	0	62	30	24	22	22	1.99
99835573--99835888	46	6.7	46	75	12	227	23	30	18	27	1.98
99835569--99835888	140	2.3	142	80	9	343	23	30	18	27	1.98
99842693--99842735	19	2.3	19	84	8	52	2	27	0	69	1.00
99842949--99842979	16	2.0	15	93	6	53	19	9	0	70	1.14
99852994--99853150	41	3.7	44	80	14	177	29	28	17	23	1.97
99867132--99867329	89	2.2	88	88	3	290	24	23	18	34	1.96
99867444--99867469	13	2.0	13	100	0	52	23	0	53	23	1.46
99868283--99868508	67	3.4	66	75	5	179	35	18	21	24	1.96
99872102--99872130	14	2.0	15	93	6	51	13	0	3	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99873866--99873949	11	7.6	11	76	0	60	16	4	8	70	1.30
99875228--99875280	22	2.4	22	87	3	70	11	11	15	62	1.55
99881052--99881098	22	2.2	21	88	3	67	61	2	4	31	1.27
99882037--99882086	6	8.3	6	95	0	91	18	16	16	50	1.79
99883916--99883998	41	2.0	40	88	6	123	39	1	13	45	1.51
99884117--99884203	29	2.9	29	77	6	75	49	13	16	20	1.79
99885699--99885850	37	3.9	37	81	13	173	26	21	15	36	1.94
99885767--99886035	46	5.6	46	84	10	331	28	21	14	35	1.93
99885810--99886021	52	4.2	52	85	7	292	28	22	13	35	1.92
99885767--99886035	98	2.7	98	92	0	448	28	21	14	35	1.93
99888410--99888488	39	2.0	40	92	2	133	60	8	5	25	1.47
99889583--99889645	19	3.3	19	80	10	74	39	0	7	52	1.31
99892420--99892472	26	2.0	26	96	0	97	30	15	7	47	1.73
99894132--99894204	35	2.1	35	100	0	146	46	8	13	31	1.73
99894279--99894340	3	20.7	3	100	0	124	32	0	0	67	0.91
99900333--99900375	22	2.0	22	90	0	68	37	6	0	55	1.27
99904266--99904329	32	2.0	31	88	8	94	53	0	17	29	1.44
99904811--99904874	17	3.6	17	89	6	83	40	10	12	35	1.78
99904836--99904883	19	2.5	20	77	16	64	43	8	14	33	1.75
99904803--99904874	19	3.9	19	85	10	96	40	9	13	36	1.78
99904829--99904880	17	2.9	17	81	15	61	42	11	11	34	1.77
99911608--99911740	41	3.3	41	73	17	152	30	26	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99911554--99911921	84	4.4	84	85	7	489	31	24	20	23	1.98
99911975--99912057	43	1.9	43	85	2	112	33	16	24	25	1.96
99912054--99912970	207	4.4	207	91	0	1460	30	17	23	29	1.97
99913337--99913462	19	6.9	18	75	18	84	38	10	15	36	1.81
99913336--99913462	17	6.9	19	83	12	176	38	10	14	36	1.81
99913344--99913462	35	3.3	35	92	4	184	38	10	14	36	1.81
99914437--99914516	24	3.3	24	75	5	72	50	0	28	21	1.49
99916766--99916797	16	1.9	17	93	6	57	25	18	0	56	1.42
99917170--99917230	30	2.0	30	100	0	122	32	9	13	44	1.76
99917857--99917923	33	2.0	34	85	2	91	29	2	19	47	1.64
99918474--99918510	18	2.1	18	89	0	56	51	0	27	21	1.48
99918482--99918556	24	3.1	24	86	0	87	52	0	28	20	1.47
99932644--99932669	7	3.7	7	100	0	52	57	0	0	42	0.98
99932849--99932891	20	2.2	19	88	12	61	58	2	0	39	1.11
99932952--99933001	12	3.9	13	71	12	50	60	0	6	34	1.21
99933040--99933087	20	2.3	20	85	7	60	58	0	2	39	1.10
99936328--99936560	48	5.0	48	77	9	207	27	19	28	24	1.99
99936338--99936560	91	2.4	94	81	11	255	27	20	28	22	1.99
99940614--99940671	30	1.9	30	86	6	82	17	31	32	18	1.94
99942498--99942604	29	3.5	29	72	14	106	50	17	9	22	1.74
99942474--99942602	64	2.0	64	96	0	240	48	19	8	23	1.76
99948367--99948410	2	22.0	2	83	0	52	43	2	2	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99950662--99950708	17	2.8	17	78	15	53	34	6	0	59	1.23
99951598--99951675	39	2.0	39	94	0	138	20	23	20	35	1.96
99953006--99953041	13	2.8	13	95	0	63	33	22	16	27	1.95
99955207--99955243	18	2.0	19	89	5	58	67	0	0	32	0.91
99955511--99955554	22	2.0	22	86	4	61	38	18	6	36	1.77
99955547--99955673	18	7.5	15	79	16	78	37	14	11	37	1.82
99955533--99955675	54	2.7	54	96	3	263	37	14	11	37	1.82
99955526--99955676	71	2.1	71	88	10	229	36	15	10	37	1.82
99955533--99955675	19	7.9	19	87	12	230	37	14	11	37	1.82
99956030--99956220	45	4.3	45	86	1	249	25	27	14	33	1.94
99956031--99956220	89	2.1	90	85	2	249	25	27	14	33	1.94
99956256--99956765	78	6.5	78	90	1	790	25	25	18	31	1.97
99956237--99956765	156	3.4	156	94	0	896	25	24	18	31	1.97
99956753--99956792	20	2.0	20	95	0	71	27	17	20	35	1.95
99965023--99965056	17	1.9	18	88	5	52	67	0	0	32	0.91
99965312--99965448	18	7.1	21	82	10	68	40	15	8	35	1.78
99965312--99965369	22	2.6	22	81	7	64	41	17	5	36	1.72
99965341--99965473	35	3.7	37	88	9	197	36	15	9	37	1.81
99965348--99965473	54	2.3	54	98	0	243	37	15	10	37	1.81
99965362--99965471	17	6.5	15	83	12	78	37	15	10	37	1.81
99965348--99965473	19	6.9	19	89	10	210	37	15	10	37	1.81
99969685--99969742	30	1.9	30	89	0	89	12	29	37	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99971715--99971836	6	20.3	6	75	16	53	68	0	2	28	1.08
99971787--99971838	21	2.5	21	81	9	70	76	0	0	23	0.78
99971787--99971838	27	1.9	27	88	7	79	76	0	0	23	0.78
99971787--99971839	5	10.2	5	80	15	63	75	0	0	24	0.80
99975515--99975571	24	2.2	27	81	18	93	47	14	24	14	1.80
99975521--99975571	24	2.1	24	100	0	102	49	13	25	11	1.76
99977356--99977382	7	3.9	7	100	0	54	44	0	25	29	1.54
99980487--99980539	24	2.2	25	93	6	92	26	7	3	62	1.39
99992222--99992264	22	2.0	22	95	0	77	34	9	6	48	1.62
99992399--99992427	10	3.0	10	95	5	51	51	0	6	41	1.28
99993771--99993795	12	2.1	12	100	0	50	24	36	24	16	1.94
99993958--99994050	9	10.3	9	88	0	132	34	24	9	31	1.88
99993958--99994050	27	3.4	27	92	0	159	34	24	9	31	1.88
99995185--99995218	15	2.4	14	90	5	50	67	5	20	5	1.33
100003496--100003585	45	2.0	45	97	0	171	41	8	21	28	1.83
100005051--100005300	100	2.6	96	86	6	328	41	14	16	28	1.87
100005257--100005416	59	2.8	58	75	12	170	28	15	21	34	1.94
100014628--100014733	54	2.0	53	96	1	194	33	13	12	41	1.81
100024301--100024344	20	2.3	19	84	11	54	40	9	13	36	1.76
100024378--100024421	20	2.2	20	87	0	61	40	4	11	43	1.61
100024331--100024421	40	2.3	40	80	3	103	40	4	13	41	1.64
100024514--100024564	20	2.5	20	84	6	68	31	3	17	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100024366--100024744	167	2.3	167	77	9	403	39	4	14	41	1.66
100024623--100024775	20	7.7	20	67	12	57	43	5	12	38	1.65
100024681--100024756	40	1.9	40	89	5	118	42	6	10	40	1.65
100024663--100024771	40	2.8	37	77	14	112	44	5	11	39	1.63
100025176--100025220	2	22.5	2	86	0	54	40	0	8	51	1.33
100025180--100025220	14	2.9	14	85	0	64	39	0	9	51	1.35
100029564--100029619	16	3.6	16	83	13	64	28	0	7	64	1.20
100033369--100033410	17	2.5	17	80	3	50	57	0	2	40	1.12
100037708--100037752	17	2.7	16	86	10	63	86	0	4	8	0.69
100037713--100037753	9	4.6	9	85	11	57	87	0	4	7	0.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316