genome.fa.s1.2.7.7.80.10.50.1000.307.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  307  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100881920--100882018	9	10.4	9	69	14	65	51	2	1	45	1.19
100881910--100881972	29	2.2	29	91	2	101	55	3	0	41	1.16
100881950--100881995	19	2.4	19	82	13	58	41	2	2	54	1.25
100881988--100882076	34	2.7	34	80	13	105	53	1	1	43	1.15
100881988--100882076	33	2.7	33	80	16	103	53	1	1	43	1.15
100885519--100885641	30	4.1	30	88	0	174	29	28	19	22	1.98
100885519--100885641	60	2.0	60	90	0	192	29	28	19	22	1.98
100888628--100888685	27	2.1	28	83	3	73	44	0	0	55	0.99
100888781--100888824	22	2.1	21	84	16	56	61	0	2	36	1.09
100888878--100888946	33	2.1	32	82	12	79	72	2	8	15	1.21
100888945--100889013	26	2.5	27	79	9	77	47	1	2	47	1.25
100889488--100889574	22	4.0	21	68	24	63	57	2	0	40	1.11
100889488--100889561	23	3.4	22	80	9	71	56	2	0	40	1.13
100889486--100889576	23	4.1	21	72	17	60	56	2	0	41	1.12
100889645--100889678	9	3.8	9	100	0	68	82	0	8	8	0.85
100892801--100892858	30	2.0	29	86	10	82	50	0	3	46	1.18
100892813--100892870	18	3.0	19	80	14	57	51	1	1	44	1.21
100893371--100893428	29	2.0	28	83	9	73	51	6	13	27	1.66
100895866--100895938	4	18.5	4	77	8	60	19	2	27	50	1.61
100903028--100903237	42	5.0	42	70	11	131	41	17	16	24	1.89
100903074--100903220	43	3.4	43	74	10	131	42	17	18	21	1.89
100903023--100903237	85	2.5	84	83	2	277	40	17	17	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100903336--100903365	7	4.4	7	95	4	53	33	26	10	30	1.89
100904581--100904706	39	3.2	39	95	0	216	21	21	30	26	1.98
100904581--100904744	78	2.1	78	83	5	199	21	23	29	26	1.99
100909113--100909156	22	2.0	21	86	4	61	31	2	9	56	1.43
100912207--100912251	2	22.5	2	95	0	81	0	51	0	48	1.00
100913081--100913132	15	3.5	15	78	0	59	42	0	46	11	1.40
100913072--100913118	24	2.0	24	87	8	69	40	0	48	10	1.38
100913071--100913133	30	2.1	30	87	0	90	44	0	46	9	1.36
100922203--100922701	166	3.0	166	97	0	944	40	15	13	30	1.86
100924973--100925026	27	2.0	27	100	0	108	29	11	22	37	1.89
100926623--100926664	16	2.6	16	77	7	50	45	0	4	50	1.23
100927764--100927832	30	2.3	30	94	2	120	33	14	11	40	1.82
100929195--100929237	20	2.2	19	83	4	50	4	30	4	60	1.37
100930126--100930177	20	2.5	20	84	3	59	55	1	36	5	1.35
100930606--100930811	79	2.7	78	91	6	323	50	5	10	33	1.59
100932659--100932683	8	3.1	8	100	0	50	12	0	0	88	0.53
100943846--100943910	9	6.7	9	78	16	67	73	1	3	21	1.05
100943845--100943888	10	4.4	11	85	8	51	77	2	0	20	0.88
100943845--100943910	20	3.3	21	79	6	66	74	1	3	21	1.04
100950028--100950055	3	9.3	3	100	0	56	67	0	32	0	0.91
100951611--100952039	3	142.3	3	65	17	81	60	2	8	28	1.38
100951764--100951902	20	6.7	20	66	17	61	61	1	8	28	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100951748--100951823	37	2.1	35	85	4	98	63	1	5	30	1.25
100951855--100951908	20	2.7	20	88	2	81	62	1	9	25	1.35
100955306--100955346	20	2.0	20	85	0	55	58	9	7	24	1.55
100955723--100955771	20	2.7	18	84	12	64	32	2	2	63	1.17
100956556--100956691	69	2.0	69	86	0	191	38	10	8	42	1.70
100959566--100959621	19	2.9	20	76	7	62	14	1	14	69	1.27
100964941--100964974	3	11.3	3	87	0	50	29	2	35	32	1.73
100965446--100965495	19	2.6	19	87	3	64	54	12	0	34	1.38
100965963--100966008	3	15.3	3	100	0	92	34	0	0	65	0.93
100975093--100975122	12	2.4	13	94	5	53	70	0	6	23	1.11
100976632--100976688	29	1.9	30	85	3	80	43	14	3	38	1.62
100982088--100982115	14	2.0	14	100	0	56	57	0	0	42	0.99
100987033--100987072	17	2.3	18	91	4	64	67	0	0	32	0.91
100989855--100989929	31	2.5	30	82	10	82	29	6	17	46	1.73
100989918--100989977	31	1.9	32	86	3	86	35	15	8	41	1.77
100990423--100990461	19	2.0	20	85	9	55	53	2	5	38	1.37
100990776--100990804	15	1.9	15	100	0	58	65	0	0	34	0.93
101001198--101001246	24	2.0	24	96	0	89	22	20	6	51	1.69
101001876--101001935	31	1.9	32	89	3	95	36	21	16	25	1.94
101006420--101006464	18	2.7	16	82	6	54	64	2	2	31	1.18
101007200--101007234	14	2.4	14	90	4	52	34	0	11	54	1.37
101007521--101007582	24	2.6	23	75	14	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101007567--101007603	16	2.3	16	86	13	58	59	0	0	40	0.97
101007562--101007686	13	8.4	15	68	23	61	50	3	0	45	1.23
101008877--101008925	25	2.0	25	91	0	80	22	16	14	46	1.82
101010425--101010467	22	1.9	23	85	4	61	51	20	13	13	1.76
101012903--101012933	16	1.9	16	93	0	53	41	0	0	58	0.98
101014759--101015474	154	4.6	156	77	5	678	37	17	15	29	1.91
101014762--101015472	312	2.3	309	85	2	931	37	17	16	28	1.91
101024544--101024605	31	2.1	30	87	6	90	43	12	9	33	1.76
101026617--101026666	3	16.7	3	78	0	55	0	10	34	56	1.33
101026622--101026665	12	3.7	12	93	0	61	0	9	34	56	1.31
101026625--101026665	18	2.3	18	91	0	64	0	9	34	56	1.32
101028384--101028438	16	3.2	18	75	15	62	40	7	3	49	1.48
101032264--101032431	47	3.5	47	84	6	194	31	30	16	21	1.95
101042951--101043046	49	2.0	49	97	0	183	53	8	6	32	1.56
101043423--101043553	66	2.0	66	90	3	210	34	11	10	43	1.75
101047206--101047393	94	2.0	93	97	1	358	42	10	28	19	1.84
101055953--101055993	22	1.9	21	90	5	64	14	21	0	63	1.30
101057374--101057423	26	1.9	26	83	0	64	40	22	2	36	1.65
101057354--101057423	13	5.3	13	68	1	50	37	24	2	35	1.70
101058051--101058101	23	2.2	24	85	3	68	33	25	29	11	1.91
101060168--101060216	21	2.5	18	73	20	53	48	4	0	46	1.20
101061886--101061932	21	2.1	22	84	7	60	48	0	4	46	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101064219--101064293	24	3.2	24	63	30	61	42	14	24	18	1.88
101064111--101064324	93	2.3	92	85	4	270	42	14	23	19	1.88
101064121--101064324	46	4.4	46	89	2	268	42	14	23	19	1.88
101066415--101066596	46	4.0	46	86	4	242	21	22	14	41	1.89
101066420--101066596	92	1.9	91	89	4	275	21	22	14	41	1.89
101066920--101066968	23	2.1	23	84	3	62	34	26	22	16	1.95
101066933--101067048	23	5.0	23	68	12	83	29	25	28	16	1.97
101070830--101070901	19	3.9	18	87	10	103	36	13	11	38	1.81
101070823--101070901	35	2.2	37	86	13	121	35	15	10	39	1.81
101070844--101070899	17	3.5	15	88	9	60	35	16	10	37	1.83
101071107--101071155	21	2.5	18	73	20	53	48	4	0	46	1.20
101084815--101084866	7	7.6	7	76	2	52	55	23	1	19	1.53
101084815--101084866	21	2.5	21	87	3	70	55	23	1	19	1.53
101086707--101086888	46	4.0	46	91	1	267	21	23	14	40	1.90
101089019--101089061	11	3.7	11	82	11	50	60	2	0	37	1.10
101089024--101089102	30	2.6	30	75	13	72	54	5	0	40	1.22
101091500--101091547	25	1.9	25	82	0	60	31	18	0	50	1.48
101091703--101091884	46	4.0	46	91	1	267	21	23	14	40	1.90
101094012--101094054	11	3.7	11	82	11	50	60	2	0	37	1.10
101094017--101094095	30	2.6	30	75	13	72	54	5	0	40	1.22
101095430--101095533	53	2.0	53	98	0	199	34	23	5	36	1.79
101102967--101102999	16	2.1	16	88	5	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101108088--101108155	34	2.0	34	91	0	109	44	7	23	25	1.79
101110231--101110301	35	2.0	36	97	2	135	36	14	11	38	1.81
101110233--101110288	17	3.5	15	88	9	60	35	16	10	37	1.83
101110219--101110306	19	4.8	19	90	8	146	36	14	10	38	1.80
101110703--101110764	29	2.1	30	87	3	90	16	32	11	40	1.83
101110871--101111154	78	3.6	78	95	0	480	25	25	17	31	1.97
101119686--101119761	22	3.7	21	78	11	59	40	18	6	34	1.76
101119715--101119809	35	2.6	37	87	12	144	35	15	10	37	1.82
101119736--101119791	17	3.5	15	88	9	60	35	16	10	37	1.83
101119722--101119809	19	4.8	19	91	8	155	36	14	11	37	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316