genome.fa.s1.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Length:  104050246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   

This is table  146  of  316  ( 37835 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46546431--46546699	24	11.0	24	90	3	396	29	21	20	28	1.98
46549070--46549160	27	3.4	28	82	11	100	38	18	9	32	1.84
46549094--46549173	27	3.0	26	82	14	74	37	18	12	31	1.88
46549168--46549376	27	7.7	27	85	2	249	27	24	7	40	1.82
46549354--46549492	27	5.1	27	78	3	136	39	22	7	30	1.82
46549283--46549387	54	1.9	54	84	0	138	32	20	6	40	1.79
46549219--46549395	81	2.2	81	80	2	185	29	23	7	39	1.83
46549354--46549492	54	2.6	54	83	4	181	39	22	7	30	1.82
46549369--46549523	81	1.9	81	81	2	186	40	20	8	30	1.82
46549368--46549492	27	4.7	26	82	5	142	41	20	8	29	1.81
46549327--46549521	27	7.2	27	79	5	108	38	21	7	32	1.81
46549417--46549521	54	1.9	54	83	7	133	40	20	8	31	1.82
46549637--46549728	27	3.4	26	87	3	121	33	20	25	20	1.97
46549624--46549728	27	3.9	27	81	8	117	34	21	21	21	1.97
46550355--46550396	14	3.1	14	80	12	52	35	16	26	21	1.94
46550985--46551040	11	5.5	11	71	16	57	35	12	19	32	1.89
46550974--46551040	20	3.3	20	93	0	116	34	11	20	32	1.90
46551089--46551356	24	11.0	24	89	3	369	30	21	21	27	1.98
46552781--46552877	28	3.5	27	78	10	106	29	29	15	24	1.96
46552779--46552887	56	1.9	57	85	9	152	31	28	14	25	1.95
46558412--46558462	25	2.0	25	88	7	77	29	19	17	33	1.95
46558506--46558550	10	4.4	10	83	5	54	33	17	15	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46558594--46558656	25	2.6	24	89	2	90	25	28	22	23	1.99
46558602--46558656	24	2.2	25	90	3	85	23	30	20	25	1.98
46566255--46566299	10	4.4	10	86	5	63	35	20	15	28	1.93
46566255--46566299	21	2.2	20	88	4	63	35	20	15	28	1.93
46566345--46566412	25	2.7	25	86	0	91	27	25	22	25	1.99
46568297--46568339	20	2.1	21	83	12	54	53	25	0	20	1.46
46569984--46570146	65	2.5	66	75	9	163	23	29	26	19	1.98
46573156--46573724	48	12.0	48	77	12	481	35	6	26	32	1.81
46573323--46573372	24	2.1	24	100	0	100	34	8	26	32	1.85
46573285--46573584	72	4.0	72	91	7	417	35	6	25	33	1.80
46573411--46573453	11	3.7	11	82	11	59	39	0	20	39	1.53
46573339--46573584	83	3.1	79	87	12	371	35	5	24	34	1.79
46573407--46573456	24	2.1	24	100	0	100	40	0	22	38	1.54
46573416--46573456	13	3.3	13	80	13	59	39	0	21	39	1.54
46573195--46573501	120	2.6	118	79	11	415	34	6	25	32	1.82
46573483--46573536	11	4.7	11	84	8	72	38	0	20	40	1.53
46573488--46573539	24	2.2	24	92	0	86	38	0	21	40	1.53
46573518--46573715	98	2.0	98	96	0	360	34	6	26	32	1.81
46573514--46573734	98	2.3	96	87	6	336	34	5	27	32	1.80
46573865--46573973	37	2.9	37	91	0	173	22	18	32	26	1.97
46575032--46575087	27	2.1	27	86	6	78	25	16	23	35	1.94
46576573--46576721	40	3.7	40	94	0	262	26	26	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46576729--46576770	18	2.3	18	76	11	50	45	19	4	30	1.71
46578442--46578484	20	2.2	20	87	4	61	25	37	23	13	1.92
46586894--46587051	43	3.7	43	77	12	146	31	25	17	24	1.97
46588404--46588430	4	6.8	4	100	0	54	22	0	0	77	0.76
46588441--46588478	19	2.0	19	100	0	76	42	5	5	47	1.48
46589800--46589835	18	2.1	18	89	5	56	27	13	13	44	1.82
46590946--46591053	28	3.9	28	76	3	83	28	30	14	25	1.95
46591129--46591165	19	2.0	19	89	5	58	16	40	16	27	1.89
46593526--46593697	93	1.8	93	91	0	281	24	21	26	27	1.99
46596812--46596871	27	2.2	28	80	14	72	31	26	15	26	1.95
46598689--46598751	25	2.5	25	80	14	76	30	23	20	25	1.99
46599605--46599635	15	2.1	15	100	0	62	32	0	16	51	1.44
46606403--46606477	25	3.1	25	71	17	68	29	20	18	32	1.96
46606460--46606538	25	3.2	25	78	10	90	31	16	25	26	1.96
46611575--46611747	46	3.7	46	73	15	167	23	20	27	28	1.99
46611572--46611742	93	1.8	93	92	0	288	23	21	28	27	1.99
46619003--46619175	46	3.7	46	75	10	181	23	21	27	28	1.99
46619000--46619170	93	1.8	93	91	0	279	22	21	28	27	1.99
46622019--46622127	37	2.9	37	94	0	182	26	30	19	23	1.98
46622274--46623159	150	6.0	145	89	3	1249	31	25	6	36	1.81
46622277--46623159	248	3.6	246	95	1	1583	31	25	6	36	1.81
46622277--46623159	98	8.9	98	89	4	1296	31	25	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46627845--46627935	27	3.4	27	84	1	112	34	17	21	26	1.96
46634447--46634538	27	3.4	27	87	3	132	33	19	20	26	1.96
46635279--46635338	27	2.3	27	85	2	77	23	25	16	35	1.95
46663479--46663702	40	5.7	40	86	6	271	24	22	28	25	2.00
46663532--46663702	78	2.2	78	86	6	238	23	22	28	25	1.99
46663532--46663735	79	2.6	79	82	5	209	25	21	27	25	1.99
46667140--46667280	42	3.2	41	75	16	113	26	15	26	30	1.96
46667157--46667254	48	2.1	47	86	5	135	27	16	28	27	1.97
46667209--46667311	42	2.5	42	77	6	118	23	15	28	33	1.95
46667487--46667569	41	2.0	41	95	0	148	38	7	19	34	1.79
46672332--46672424	37	2.6	36	79	3	123	25	18	29	26	1.98
46672413--46672657	42	5.7	42	75	11	194	26	14	27	31	1.95
46672410--46672575	90	1.8	90	84	2	226	25	15	28	30	1.95
46672769--46672851	41	2.0	41	92	0	139	38	8	19	33	1.82
46674603--46674685	28	3.0	28	80	7	96	31	12	26	30	1.92
46692891--46692943	27	2.0	27	85	7	72	16	26	37	18	1.93
46693046--46693200	27	5.8	27	80	4	161	32	16	15	36	1.90
46693047--46693200	53	2.9	53	82	7	168	31	16	15	36	1.90
46693194--46693260	26	2.6	26	88	4	100	40	19	19	20	1.92
46693335--46693380	23	2.0	23	84	16	60	26	10	21	41	1.86
46694585--46694799	93	2.3	93	81	10	244	26	17	30	25	1.97
46720523--46720575	27	2.0	27	85	7	72	16	26	37	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46720679--46720834	27	5.8	27	82	3	170	32	16	15	35	1.90
46720828--46720895	26	2.6	26	90	2	109	41	19	19	20	1.91
46720971--46721016	23	2.0	23	84	16	60	26	10	21	41	1.86
46722234--46722499	94	2.8	94	78	12	251	26	18	30	24	1.98
46729862--46730181	49	6.8	46	72	13	235	26	19	30	23	1.98
46735030--46735125	42	2.3	42	96	0	174	33	6	30	30	1.82
46739499--46739531	14	2.3	15	89	5	50	39	0	39	21	1.53
46742504--46742741	39	6.1	38	81	5	244	19	33	16	30	1.94
46747485--46747659	46	3.8	46	76	13	144	26	16	30	25	1.97
46767553--46768063	47	10.7	47	94	2	826	32	8	29	29	1.87
46770637--46770685	25	2.0	25	91	0	80	34	24	14	26	1.94
46770727--46770754	10	2.8	10	100	0	56	32	17	17	32	1.94
46771792--46771825	17	1.9	17	88	5	50	14	44	29	11	1.81
46803496--46803530	17	2.0	18	88	5	54	60	20	8	11	1.57
46839337--46839508	40	4.3	40	88	2	222	25	27	21	25	1.99
46839339--46839561	40	5.6	39	83	5	216	25	27	21	25	1.99
46839337--46839561	80	2.8	79	80	7	240	25	27	21	25	1.99
46839493--46839570	40	1.9	41	82	10	97	26	28	20	24	1.99
46843348--46843455	56	1.9	56	85	10	150	26	15	27	29	1.96
46848097--46848462	47	7.7	47	94	0	606	32	8	29	29	1.87
46850616--46850653	19	2.0	20	85	15	53	39	23	0	36	1.55
46850881--46851002	46	2.7	46	92	0	199	31	27	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46859026--46859183	42	3.7	42	79	8	160	29	24	15	31	1.95
46869613--46869656	23	1.9	23	85	0	61	25	22	18	34	1.96
46871659--46871977	49	6.7	46	75	8	221	27	21	29	21	1.99
46872716--46872840	54	2.3	55	87	1	180	22	19	30	28	1.98
46882182--46882224	16	2.7	15	78	7	50	44	6	0	48	1.29
46885114--46885188	38	2.0	38	89	0	114	22	21	26	29	1.99
46885186--46885353	43	3.9	43	83	3	212	15	22	30	30	1.95
46887952--46888123	93	1.8	93	92	0	290	27	29	22	20	1.98
46887944--46888119	46	3.8	46	80	10	196	29	28	21	19	1.98
46887988--46888138	46	3.2	46	72	15	130	30	28	19	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316